RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 ZNF215Q9UL58 517 aaPredicted RBP12.16□□□□□ -0.46
COL6A3-214ENST00000493608 NID2Q14112 1375 aa12.16□□□□□ -0.46
COL6A3-214ENST00000493608 TMEM265A0A087WTH1 108 aa12.15□□□□□ -0.46
COL6A3-214ENST00000493608 DDX39AO00148 427 aaKnown RBP12.15□□□□□ -0.46
COL6A3-214ENST00000493608 MAFGO15525 162 aa12.15□□□□□ -0.46
COL6A3-214ENST00000493608 CTSHP09668 335 aa12.15□□□□□ -0.46
COL6A3-214ENST00000493608 FOSL2P15408 326 aa12.15□□□□□ -0.46
COL6A3-214ENST00000493608 SREBF1P36956 1147 aa12.15□□□□□ -0.46
COL6A3-214ENST00000493608 EVCP57679 992 aa12.15□□□□□ -0.46
COL6A3-214ENST00000493608 SSRP1Q08945 709 aaKnown RBP12.15□□□□□ -0.46
COL6A3-214ENST00000493608 RBL2Q08999 1139 aa12.15□□□□□ -0.46
COL6A3-214ENST00000493608 ITGB3BPQ13352 177 aaPredicted RBP12.15□□□□□ -0.46
COL6A3-214ENST00000493608 MBTPS1Q14703 1052 aa12.15□□□□□ -0.46
COL6A3-214ENST00000493608 RAB30Q15771 203 aa12.15□□□□□ -0.46
COL6A3-214ENST00000493608 PLA2G4DQ86XP0 818 aa12.15□□□□□ -0.46
COL6A3-214ENST00000493608 GLG1Q92896 1179 aa12.15□□□□□ -0.46
COL6A3-214ENST00000493608 ZBTB10Q96DT7 871 aa12.15□□□□□ -0.46
COL6A3-214ENST00000493608 RNF26Q9BY78 433 aaPredicted RBP12.15□□□□□ -0.46
COL6A3-214ENST00000493608 ZMYND12Q9H0C1 365 aa12.15□□□□□ -0.46
COL6A3-214ENST00000493608 GLT8D2Q9H1C3 349 aa12.15□□□□□ -0.46
COL6A3-214ENST00000493608 SLC28A3Q9HAS3 691 aa12.15□□□□□ -0.46
COL6A3-214ENST00000493608 AGO4Q9HCK5 861 aaKnown RBP12.15□□□□□ -0.46
COL6A3-214ENST00000493608 JPH1Q9HDC5 661 aaPredicted RBP12.15□□□□□ -0.46
COL6A3-214ENST00000493608 SLC9A2Q9UBY0 812 aa12.15□□□□□ -0.46
COL6A3-214ENST00000493608 ESYT2A0FGR8 921 aa12.14□□□□□ -0.47
COL6A3-214ENST00000493608 RSPH10B2B2RC85 870 aa12.14□□□□□ -0.47
COL6A3-214ENST00000493608 FAM86B1E9PN63 330 aa12.14□□□□□ -0.47
COL6A3-214ENST00000493608 MEIS1O00470 390 aa12.14□□□□□ -0.47
COL6A3-214ENST00000493608 CXCL10P02778 98 aa12.14□□□□□ -0.47
COL6A3-214ENST00000493608 FAM86B2P0C5J1 330 aa12.14□□□□□ -0.47
COL6A3-214ENST00000493608 RSPH10BP0C881 870 aa12.14□□□□□ -0.47
COL6A3-214ENST00000493608 HOXC8P31273 242 aa12.14□□□□□ -0.47
COL6A3-214ENST00000493608 IGBP1P78318 339 aa12.14□□□□□ -0.47
COL6A3-214ENST00000493608 DEFB103AP81534 67 aa12.14□□□□□ -0.47
COL6A3-214ENST00000493608 AP3B2Q13367 1082 aa12.14□□□□□ -0.47
COL6A3-214ENST00000493608 CNKSR3Q6P9H4 555 aa12.14□□□□□ -0.47
COL6A3-214ENST00000493608 RUFY4Q6ZNE9 571 aa12.14□□□□□ -0.47
COL6A3-214ENST00000493608 REXO1Q8N1G1 1221 aaKnown RBP12.14□□□□□ -0.47
COL6A3-214ENST00000493608 MAFAQ8NHW3 353 aaPredicted RBP12.14□□□□□ -0.47
COL6A3-214ENST00000493608 LMBR1Q8WVP7 490 aa12.14□□□□□ -0.47
COL6A3-214ENST00000493608 PPM1EQ8WY54 764 aa12.14□□□□□ -0.47
COL6A3-214ENST00000493608 ZNF274Q96GC6 653 aaPredicted RBP12.14□□□□□ -0.47
COL6A3-214ENST00000493608 AIFM3Q96NN9 605 aa12.14□□□□□ -0.47
COL6A3-214ENST00000493608 PCYT2Q99447 389 aa12.14□□□□□ -0.47
COL6A3-214ENST00000493608 SDF4Q9BRK5 362 aa12.14□□□□□ -0.47
COL6A3-214ENST00000493608 CERS4Q9HA82 394 aa12.14□□□□□ -0.47
COL6A3-214ENST00000493608 PCDHA11Q9Y5I1 949 aa12.14□□□□□ -0.47
COL6A3-214ENST00000493608 MYH9P35579 1960 aaKnown RBP12.13□□□□□ -0.47
COL6A3-214ENST00000493608 CPLX1O14810 134 aa12.13□□□□□ -0.47
COL6A3-214ENST00000493608 CA3P07451 260 aa12.13□□□□□ -0.47
COL6A3-214ENST00000493608 GNAT1P11488 350 aa12.13□□□□□ -0.47
COL6A3-214ENST00000493608 GNA11P29992 359 aa12.13□□□□□ -0.47
COL6A3-214ENST00000493608 KCNJ6P48051 423 aa12.13□□□□□ -0.47
COL6A3-214ENST00000493608 NLRP5P59047 1200 aa12.13□□□□□ -0.47
COL6A3-214ENST00000493608 ACTR2P61160 394 aa12.13□□□□□ -0.47
COL6A3-214ENST00000493608 WDR5P61964 334 aaKnown RBP12.13□□□□□ -0.47
COL6A3-214ENST00000493608 ADAM17P78536 824 aa12.13□□□□□ -0.47
COL6A3-214ENST00000493608 PPFIA1Q13136 1202 aa12.13□□□□□ -0.47
COL6A3-214ENST00000493608 PPP2R2DQ66LE6 453 aa12.13□□□□□ -0.47
COL6A3-214ENST00000493608 FAM117BQ6P1L5 589 aa12.13□□□□□ -0.47
COL6A3-214ENST00000493608 HERC6Q8IVU3 1022 aa12.13□□□□□ -0.47
COL6A3-214ENST00000493608 DBF4BQ8NFT6 615 aa12.13□□□□□ -0.47
COL6A3-214ENST00000493608 CCDC12Q8WUD4 166 aaPredicted RBP12.13□□□□□ -0.47
COL6A3-214ENST00000493608 SLC9A7Q96T83 725 aa12.13□□□□□ -0.47
COL6A3-214ENST00000493608 SMARCAD1Q9H4L7 1026 aa12.13□□□□□ -0.47
COL6A3-214ENST00000493608 ERAP1Q9NZ08 941 aa12.13□□□□□ -0.47
COL6A3-214ENST00000493608 ADGRG1Q9Y653 693 aa12.13□□□□□ -0.47
COL6A3-214ENST00000493608 EYSQ5T1H1 3165 aa12.13□□□□□ -0.47
COL6A3-214ENST00000493608 LOXHD1Q8IVV2 1947 aa12.13□□□□□ -0.47
COL6A3-214ENST00000493608 EVPLQ92817 2033 aa12.13□□□□□ -0.47
COL6A3-214ENST00000493608 CHD9Q3L8U1 2897 aa12.12□□□□□ -0.47
COL6A3-214ENST00000493608 NFASCO94856 1347 aa12.12□□□□□ -0.47
COL6A3-214ENST00000493608 NRCAMQ92823 1304 aa12.12□□□□□ -0.47
COL6A3-214ENST00000493608 MICAL3Q7RTP6 2002 aa12.12□□□□□ -0.47
COL6A3-214ENST00000493608 IGLV3-22A0A075B6J6 115 aa12.12□□□□□ -0.47
COL6A3-214ENST00000493608 RFXAPO00287 272 aa12.12□□□□□ -0.47
COL6A3-214ENST00000493608 LGR5O75473 907 aa12.12□□□□□ -0.47
COL6A3-214ENST00000493608 BAIAP3O94812 1187 aa12.12□□□□□ -0.47
COL6A3-214ENST00000493608 ARHGEF15O94989 841 aa12.12□□□□□ -0.47
COL6A3-214ENST00000493608 PARNO95453 639 aaKnown RBP12.12□□□□□ -0.47
COL6A3-214ENST00000493608 CCNE2O96020 404 aa12.12□□□□□ -0.47
COL6A3-214ENST00000493608 CYP3A4P08684 503 aa12.12□□□□□ -0.47
COL6A3-214ENST00000493608 IGFBP4P22692 258 aa12.12□□□□□ -0.47
COL6A3-214ENST00000493608 IKBKEQ14164 716 aa12.12□□□□□ -0.47
COL6A3-214ENST00000493608 GRIK4Q16099 956 aa12.12□□□□□ -0.47
COL6A3-214ENST00000493608 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.12□□□□□ -0.47
COL6A3-214ENST00000493608 SPRED2Q7Z698 418 aa12.12□□□□□ -0.47
COL6A3-214ENST00000493608 TRIM22Q8IYM9 498 aa12.12□□□□□ -0.47
COL6A3-214ENST00000493608 PHOSPHO2Q8TCD6 241 aa12.12□□□□□ -0.47
COL6A3-214ENST00000493608 TRAPPC12Q8WVT3 735 aa12.12□□□□□ -0.47
COL6A3-214ENST00000493608 CRYGNQ8WXF5 182 aa12.12□□□□□ -0.47
COL6A3-214ENST00000493608 GAS2L1Q99501 681 aaPredicted RBP12.12□□□□□ -0.47
COL6A3-214ENST00000493608 MTRQ99707 1265 aa12.12□□□□□ -0.47
COL6A3-214ENST00000493608 AZI2Q9H6S1 392 aa12.12□□□□□ -0.47
COL6A3-214ENST00000493608 WDR81Q562E7 1941 aa12.11□□□□□ -0.47
COL6A3-214ENST00000493608 LCHNA4D1U4 455 aa12.11□□□□□ -0.47
COL6A3-214ENST00000493608 KIF28PB7ZC32 967 aa12.11□□□□□ -0.47
COL6A3-214ENST00000493608 IPO5O00410 1097 aaKnown RBP12.11□□□□□ -0.47
COL6A3-214ENST00000493608 DHX15O43143 795 aaKnown RBP12.11□□□□□ -0.47
COL6A3-214ENST00000493608 EDIL3O43854 480 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms