RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 DIRC2Q96SL1 478 aa5.22□□□□□ -1.57
PTCD3-216ENST00000487043 G6PC3Q9BUM1 346 aa5.22□□□□□ -1.57
PTCD3-216ENST00000487043 SLC13A1Q9BZW2 595 aa5.22□□□□□ -1.57
PTCD3-216ENST00000487043 CD244Q9BZW8 370 aa5.22□□□□□ -1.57
PTCD3-216ENST00000487043 SP110Q9HB58 689 aa5.22□□□□□ -1.57
PTCD3-216ENST00000487043 TOPORSQ9NS56 1045 aaPredicted RBP5.22□□□□□ -1.57
PTCD3-216ENST00000487043 MKS1Q9NXB0 559 aa5.22□□□□□ -1.57
PTCD3-216ENST00000487043 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.22□□□□□ -1.57
PTCD3-216ENST00000487043 EBF1Q9UH73 591 aa5.22□□□□□ -1.57
PTCD3-216ENST00000487043 DSEQ9UL01 958 aa5.22□□□□□ -1.57
PTCD3-216ENST00000487043 EFCAB5A4FU69 1503 aa5.22□□□□□ -1.57
PTCD3-216ENST00000487043 VPS8Q8N3P4 1428 aa5.22□□□□□ -1.57
PTCD3-216ENST00000487043 CEP170Q5SW79 1584 aa5.21□□□□□ -1.57
PTCD3-216ENST00000487043 ARAP1Q96P48 1450 aa5.21□□□□□ -1.58
PTCD3-216ENST00000487043 A0A1W2PQ45 241 aaPredicted RBP5.21□□□□□ -1.58
PTCD3-216ENST00000487043 A0A1W2PQY0 241 aa5.21□□□□□ -1.58
PTCD3-216ENST00000487043 FZD9O00144 591 aa5.21□□□□□ -1.58
PTCD3-216ENST00000487043 XPOTO43592 962 aaKnown RBP5.21□□□□□ -1.58
PTCD3-216ENST00000487043 C1QTNF9P0C862 333 aa5.21□□□□□ -1.58
PTCD3-216ENST00000487043 PF4V1P10720 104 aa5.21□□□□□ -1.58
PTCD3-216ENST00000487043 TACR1P25103 407 aa5.21□□□□□ -1.58
PTCD3-216ENST00000487043 PTX3P26022 381 aaPredicted RBP5.21□□□□□ -1.58
PTCD3-216ENST00000487043 RECQLP46063 649 aaPredicted RBP5.21□□□□□ -1.58
PTCD3-216ENST00000487043 RHBDL3P58872 404 aa5.21□□□□□ -1.58
PTCD3-216ENST00000487043 RTP1P59025 263 aa5.21□□□□□ -1.58
PTCD3-216ENST00000487043 SMAD3P84022 425 aaKnown RBP5.21□□□□□ -1.58
PTCD3-216ENST00000487043 DUSP4Q13115 394 aa5.21□□□□□ -1.58
PTCD3-216ENST00000487043 LRRC32Q14392 662 aa5.21□□□□□ -1.58
PTCD3-216ENST00000487043 TMEM132BQ14DG7 1078 aa5.21□□□□□ -1.58
PTCD3-216ENST00000487043 SMAD2Q15796 467 aaKnown RBP5.21□□□□□ -1.58
PTCD3-216ENST00000487043 CLUL1Q15846 466 aa5.21□□□□□ -1.58
PTCD3-216ENST00000487043 GFOD2Q3B7J2 385 aa5.21□□□□□ -1.58
PTCD3-216ENST00000487043 HABP4Q5JVS0 413 aaKnown RBP5.21□□□□□ -1.58
PTCD3-216ENST00000487043 PPP4R4Q6NUP7 873 aa5.21□□□□□ -1.58
PTCD3-216ENST00000487043 LILRA6Q6PI73 481 aa5.21□□□□□ -1.58
PTCD3-216ENST00000487043 LCNL1Q6ZST4 164 aa5.21□□□□□ -1.58
PTCD3-216ENST00000487043 CEP128Q6ZU80 1094 aa5.21□□□□□ -1.58
PTCD3-216ENST00000487043 SLCO6A1Q86UG4 719 aa5.21□□□□□ -1.58
PTCD3-216ENST00000487043 FBXO15Q8NCQ5 510 aaPredicted RBP5.21□□□□□ -1.58
PTCD3-216ENST00000487043 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.21□□□□□ -1.58
PTCD3-216ENST00000487043 PMM1Q92871 262 aa5.21□□□□□ -1.58
PTCD3-216ENST00000487043 MTA3Q9BTC8 594 aa5.21□□□□□ -1.58
PTCD3-216ENST00000487043 ADAMTS10Q9H324 1103 aa5.21□□□□□ -1.58
PTCD3-216ENST00000487043 NSUN3Q9H649 340 aaKnown RBP5.21□□□□□ -1.58
PTCD3-216ENST00000487043 SLC6A20Q9NP91 592 aa5.21□□□□□ -1.58
PTCD3-216ENST00000487043 SLAMF8Q9P0V8 285 aa5.21□□□□□ -1.58
PTCD3-216ENST00000487043 IMPACTQ9P2X3 320 aa5.21□□□□□ -1.58
PTCD3-216ENST00000487043 SRPK3Q9UPE1 567 aa5.21□□□□□ -1.58
PTCD3-216ENST00000487043 ANKRD6Q9Y2G4 727 aa5.21□□□□□ -1.58
PTCD3-216ENST00000487043 RIPOR2Q9Y4F9 1068 aa5.21□□□□□ -1.58
PTCD3-216ENST00000487043 MRFAP1Q9Y605 127 aa5.21□□□□□ -1.58
PTCD3-216ENST00000487043 UGGT2Q9NYU1 1516 aa5.21□□□□□ -1.58
PTCD3-216ENST00000487043 CHD1O14646 1710 aa5.2□□□□□ -1.58
PTCD3-216ENST00000487043 KRIT1O00522 736 aa5.2□□□□□ -1.58
PTCD3-216ENST00000487043 PLIN1O60240 522 aa5.2□□□□□ -1.58
PTCD3-216ENST00000487043 H2AFYO75367 372 aaKnown RBP5.2□□□□□ -1.58
PTCD3-216ENST00000487043 MYL1P05976 194 aa5.2□□□□□ -1.58
PTCD3-216ENST00000487043 RBP3P10745 1247 aa5.2□□□□□ -1.58
PTCD3-216ENST00000487043 KIR2DL1P43626 348 aaPredicted RBP5.2□□□□□ -1.58
PTCD3-216ENST00000487043 KIR2DL2P43627 348 aaPredicted RBP5.2□□□□□ -1.58
PTCD3-216ENST00000487043 PHC1P78364 1004 aa5.2□□□□□ -1.58
PTCD3-216ENST00000487043 ODF1Q14990 250 aa5.2□□□□□ -1.58
PTCD3-216ENST00000487043 ACAP2Q15057 778 aa5.2□□□□□ -1.58
PTCD3-216ENST00000487043 SLC14A2Q15849 920 aa5.2□□□□□ -1.58
PTCD3-216ENST00000487043 HSF5Q4G112 596 aaPredicted RBP5.2□□□□□ -1.58
PTCD3-216ENST00000487043 FIGNQ5HY92 759 aa5.2□□□□□ -1.58
PTCD3-216ENST00000487043 RALGPS1Q5JS13 557 aa5.2□□□□□ -1.58
PTCD3-216ENST00000487043 MROH9Q5TGP6 573 aa5.2□□□□□ -1.58
PTCD3-216ENST00000487043 CXorf57Q6NSI4 855 aaKnown RBP5.2□□□□□ -1.58
PTCD3-216ENST00000487043 KSR2Q6VAB6 950 aa5.2□□□□□ -1.58
PTCD3-216ENST00000487043 C1QL4Q86Z23 238 aa5.2□□□□□ -1.58
PTCD3-216ENST00000487043 SIAH1Q8IUQ4 282 aa5.2□□□□□ -1.58
PTCD3-216ENST00000487043 RBM12BQ8IXT5 1001 aaKnown RBP5.2□□□□□ -1.58
PTCD3-216ENST00000487043 AMOTL1Q8IY63 956 aa5.2□□□□□ -1.58
PTCD3-216ENST00000487043 NLGN4XQ8N0W4 816 aa5.2□□□□□ -1.58
PTCD3-216ENST00000487043 CPA6Q8N4T0 437 aa5.2□□□□□ -1.58
PTCD3-216ENST00000487043 ZNF610Q8N9Z0 462 aa5.2□□□□□ -1.58
PTCD3-216ENST00000487043 NLGN2Q8NFZ4 835 aa5.2□□□□□ -1.58
PTCD3-216ENST00000487043 UHMK1Q8TAS1 419 aaKnown RBP5.2□□□□□ -1.58
PTCD3-216ENST00000487043 LINC01599Q8WXQ3 324 aa5.2□□□□□ -1.58
PTCD3-216ENST00000487043 PCGF6Q9BYE7 350 aa5.2□□□□□ -1.58
PTCD3-216ENST00000487043 ZDHHC5Q9C0B5 715 aa5.2□□□□□ -1.58
PTCD3-216ENST00000487043 ACSS2Q9NR19 701 aa5.2□□□□□ -1.58
PTCD3-216ENST00000487043 FBLN5Q9UBX5 448 aa5.2□□□□□ -1.58
PTCD3-216ENST00000487043 GIT1Q9Y2X7 761 aa5.2□□□□□ -1.58
PTCD3-216ENST00000487043 B3GALT1Q9Y5Z6 326 aa5.2□□□□□ -1.58
PTCD3-216ENST00000487043 ATP23Q9Y6H3 246 aa5.2□□□□□ -1.58
PTCD3-216ENST00000487043 SAMD9Q5K651 1589 aa5.2□□□□□ -1.58
PTCD3-216ENST00000487043 A0A1W2PQJ5 194 aa5.19□□□□□ -1.58
PTCD3-216ENST00000487043 PLEKHD1A6NEE1 506 aa5.19□□□□□ -1.58
PTCD3-216ENST00000487043 KRTAP9-7A8MTY7 169 aa5.19□□□□□ -1.58
PTCD3-216ENST00000487043 VSTM5A8MXK1 200 aa5.19□□□□□ -1.58
PTCD3-216ENST00000487043 NPIPB6E9PJ23 425 aa5.19□□□□□ -1.58
PTCD3-216ENST00000487043 SLC27A2O14975 620 aa5.19□□□□□ -1.58
PTCD3-216ENST00000487043 PCDHGA12O60330 932 aa5.19□□□□□ -1.58
PTCD3-216ENST00000487043 KDM1AO60341 852 aa5.19□□□□□ -1.58
PTCD3-216ENST00000487043 CLASP2O75122 1294 aaKnown RBP5.19□□□□□ -1.58
PTCD3-216ENST00000487043 IL33O95760 270 aa5.19□□□□□ -1.58
PTCD3-216ENST00000487043 NTRK1P04629 796 aa5.19□□□□□ -1.58
PTCD3-216ENST00000487043 ZGLP1P0C6A0 271 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms