RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 PRAMEF25A6NGN4 478 aa4.99□□□□□ -1.61
VPS50-216ENST00000484954 LAMTOR5O43504 91 aa4.99□□□□□ -1.61
VPS50-216ENST00000484954 B4GALT4O60513 344 aa4.99□□□□□ -1.61
VPS50-216ENST00000484954 FBXO21O94952 628 aa4.99□□□□□ -1.61
VPS50-216ENST00000484954 RAPGEF3O95398 923 aa4.99□□□□□ -1.61
VPS50-216ENST00000484954 FAM47CQ5HY64 1035 aa4.99□□□□□ -1.61
VPS50-216ENST00000484954 ZC3H12BQ5HYM0 836 aaKnown RBP4.99□□□□□ -1.61
VPS50-216ENST00000484954 SOGA3Q5TF21 947 aa4.99□□□□□ -1.61
VPS50-216ENST00000484954 Q6ZUG5 572 aa4.99□□□□□ -1.61
VPS50-216ENST00000484954 OVCH1Q7RTY7 1134 aa4.99□□□□□ -1.61
VPS50-216ENST00000484954 NLGN4XQ8N0W4 816 aa4.99□□□□□ -1.61
VPS50-216ENST00000484954 MAGEB10Q96LZ2 347 aaPredicted RBP4.99□□□□□ -1.61
VPS50-216ENST00000484954 CLUHP3Q96NS8 147 aa4.99□□□□□ -1.61
VPS50-216ENST00000484954 VPS11Q9H270 941 aa4.99□□□□□ -1.61
VPS50-216ENST00000484954 NCOA5Q9HCD5 579 aaKnown RBP4.99□□□□□ -1.61
VPS50-216ENST00000484954 BTBD7Q9P203 1132 aa4.99□□□□□ -1.61
VPS50-216ENST00000484954 RASSF10A6NK89 507 aa4.98□□□□□ -1.61
VPS50-216ENST00000484954 SCDO00767 359 aa4.98□□□□□ -1.61
VPS50-216ENST00000484954 GPR42O15529 346 aa4.98□□□□□ -1.61
VPS50-216ENST00000484954 EFCAB14O75071 495 aa4.98□□□□□ -1.61
VPS50-216ENST00000484954 FZD7O75084 574 aa4.98□□□□□ -1.61
VPS50-216ENST00000484954 CNOT4O95628 575 aaKnown RBP4.98□□□□□ -1.61
VPS50-216ENST00000484954 MPIG6BO95866 241 aa4.98□□□□□ -1.61
VPS50-216ENST00000484954 MMEP08473 750 aa4.98□□□□□ -1.61
VPS50-216ENST00000484954 ZNF888P0CJ79 500 aaPredicted RBP4.98□□□□□ -1.61
VPS50-216ENST00000484954 CSF2RBP32927 897 aa4.98□□□□□ -1.61
VPS50-216ENST00000484954 LRSAM1Q6UWE0 723 aa4.98□□□□□ -1.61
VPS50-216ENST00000484954 USP51Q70EK9 711 aa4.98□□□□□ -1.61
VPS50-216ENST00000484954 ZNF747Q9BV97 191 aa4.98□□□□□ -1.61
VPS50-216ENST00000484954 MRPL4Q9BYD3 311 aaKnown RBP4.98□□□□□ -1.61
VPS50-216ENST00000484954 CELF4Q9BZC1 486 aaKnown RBP4.98□□□□□ -1.61
VPS50-216ENST00000484954 PCED1AQ9H1Q7 454 aa4.98□□□□□ -1.61
VPS50-216ENST00000484954 MEGF9Q9H1U4 602 aa4.98□□□□□ -1.61
VPS50-216ENST00000484954 BARX1Q9HBU1 254 aaPredicted RBP4.98□□□□□ -1.61
VPS50-216ENST00000484954 ARHGAP28Q9P2N2 729 aa4.98□□□□□ -1.61
VPS50-216ENST00000484954 ING1Q9UK53 422 aaPredicted RBP4.98□□□□□ -1.61
VPS50-216ENST00000484954 HS3ST3A1Q9Y663 406 aa4.98□□□□□ -1.61
VPS50-216ENST00000484954 ESYT3A0FGR9 886 aa4.97□□□□□ -1.61
VPS50-216ENST00000484954 H0Y858 1186 aa4.97□□□□□ -1.61
VPS50-216ENST00000484954 KCNQ2O43526 872 aa4.97□□□□□ -1.61
VPS50-216ENST00000484954 CLASP2O75122 1294 aaKnown RBP4.97□□□□□ -1.61
VPS50-216ENST00000484954 AMHP03971 560 aa4.97□□□□□ -1.61
VPS50-216ENST00000484954 CHGBP05060 677 aa4.97□□□□□ -1.61
VPS50-216ENST00000484954 NAT1P18440 290 aa4.97□□□□□ -1.61
VPS50-216ENST00000484954 AOAHP28039 575 aa4.97□□□□□ -1.61
VPS50-216ENST00000484954 EPHB4P54760 987 aa4.97□□□□□ -1.61
VPS50-216ENST00000484954 IL13RA1P78552 427 aa4.97□□□□□ -1.61
VPS50-216ENST00000484954 KLF10Q13118 480 aa4.97□□□□□ -1.61
VPS50-216ENST00000484954 ICAM4Q14773 271 aa4.97□□□□□ -1.61
VPS50-216ENST00000484954 IGSF22Q8N9C0 903 aa4.97□□□□□ -1.61
VPS50-216ENST00000484954 AJUBAQ96IF1 538 aa4.97□□□□□ -1.61
VPS50-216ENST00000484954 AMNQ9BXJ7 453 aa4.97□□□□□ -1.61
VPS50-216ENST00000484954 KATNBL1Q9H079 304 aa4.97□□□□□ -1.61
VPS50-216ENST00000484954 PPP1R12AO14974 1030 aaPredicted RBP4.96□□□□□ -1.62
VPS50-216ENST00000484954 GSTA4O15217 222 aa4.96□□□□□ -1.62
VPS50-216ENST00000484954 PTGS1P23219 599 aa4.96□□□□□ -1.62
VPS50-216ENST00000484954 GJA4P35212 333 aa4.96□□□□□ -1.62
VPS50-216ENST00000484954 ADCY8P40145 1251 aa4.96□□□□□ -1.62
VPS50-216ENST00000484954 PPP2CBP62714 309 aa4.96□□□□□ -1.62
VPS50-216ENST00000484954 PPP2CAP67775 309 aa4.96□□□□□ -1.62
VPS50-216ENST00000484954 ZNF460Q14592 562 aa4.96□□□□□ -1.62
VPS50-216ENST00000484954 CDSNQ15517 529 aa4.96□□□□□ -1.62
VPS50-216ENST00000484954 CCDC144BQ3MJ40 725 aa4.96□□□□□ -1.62
VPS50-216ENST00000484954 GLB1LQ6UWU2 654 aa4.96□□□□□ -1.62
VPS50-216ENST00000484954 ARHGEF18Q6ZSZ5 1173 aa4.96□□□□□ -1.62
VPS50-216ENST00000484954 PLEKHH3Q7Z736 793 aa4.96□□□□□ -1.62
VPS50-216ENST00000484954 RALYLQ86SE5 291 aaKnown RBP4.96□□□□□ -1.62
VPS50-216ENST00000484954 PIF1Q9H611 641 aa4.96□□□□□ -1.62
VPS50-216ENST00000484954 ZSWIM4Q9H7M6 989 aa4.96□□□□□ -1.62
VPS50-216ENST00000484954 INCENPQ9NQS7 918 aa4.96□□□□□ -1.62
VPS50-216ENST00000484954 UCKL1Q9NWZ5 548 aa4.96□□□□□ -1.62
VPS50-216ENST00000484954 DNAJC8O75937 253 aaPredicted RBP4.95□□□□□ -1.62
VPS50-216ENST00000484954 TOP3AQ13472 1001 aaPredicted RBP4.95□□□□□ -1.62
VPS50-216ENST00000484954 NOLC1Q14978 699 aaKnown RBP eCLIP4.95□□□□□ -1.62
VPS50-216ENST00000484954 TMEM177Q53S58 311 aa4.95□□□□□ -1.62
VPS50-216ENST00000484954 EP400NLQ6ZTU2 488 aa4.95□□□□□ -1.62
VPS50-216ENST00000484954 SH3TC2Q8TF17 1288 aa4.95□□□□□ -1.62
VPS50-216ENST00000484954 ASB15Q8WXK1 588 aa4.95□□□□□ -1.62
VPS50-216ENST00000484954 DLG3Q92796 817 aa4.95□□□□□ -1.62
VPS50-216ENST00000484954 WWC2-AS2Q96NR7 200 aa4.95□□□□□ -1.62
VPS50-216ENST00000484954 GNRHR2Q96P88 292 aa4.95□□□□□ -1.62
VPS50-216ENST00000484954 CD248Q9HCU0 757 aa4.95□□□□□ -1.62
VPS50-216ENST00000484954 JADE2Q9NQC1 790 aa4.95□□□□□ -1.62
VPS50-216ENST00000484954 GALNT8Q9NY28 637 aa4.95□□□□□ -1.62
VPS50-216ENST00000484954 TSC22D4Q9Y3Q8 395 aa4.95□□□□□ -1.62
VPS50-216ENST00000484954 B3GALT1Q9Y5Z6 326 aa4.95□□□□□ -1.62
VPS50-216ENST00000484954 CCDC163A0A0D9SF12 145 aa4.94□□□□□ -1.62
VPS50-216ENST00000484954 NPEPPSL1A6NEC2 478 aa4.94□□□□□ -1.62
VPS50-216ENST00000484954 PLD2O14939 933 aa4.94□□□□□ -1.62
VPS50-216ENST00000484954 GLRX3O76003 335 aaKnown RBP4.94□□□□□ -1.62
VPS50-216ENST00000484954 ZBTB48P10074 688 aaPredicted RBP4.94□□□□□ -1.62
VPS50-216ENST00000484954 SDSP20132 328 aa4.94□□□□□ -1.62
VPS50-216ENST00000484954 POLD1P28340 1107 aa4.94□□□□□ -1.62
VPS50-216ENST00000484954 MECP2P51608 486 aaKnown RBP4.94□□□□□ -1.62
VPS50-216ENST00000484954 RRADP55042 308 aa4.94□□□□□ -1.62
VPS50-216ENST00000484954 HERVK_113P62684 666 aa4.94□□□□□ -1.62
VPS50-216ENST00000484954 WDR72Q3MJ13 1102 aa4.94□□□□□ -1.62
VPS50-216ENST00000484954 CATSPEREQ5SY80 951 aa4.94□□□□□ -1.62
VPS50-216ENST00000484954 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.94□□□□□ -1.62
VPS50-216ENST00000484954 LARP4Q71RC2 724 aaKnown RBP eCLIP4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms