RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 POTEBQ6S5H4 581 aa9.25□□□□□ -0.93
USP54-212ENST00000480210 ANKRD33Q7Z3H0 272 aa9.25□□□□□ -0.93
USP54-212ENST00000480210 CKAP2LQ8IYA6 745 aa9.25□□□□□ -0.93
USP54-212ENST00000480210 ATP8B4Q8TF62 1192 aa9.25□□□□□ -0.93
USP54-212ENST00000480210 CALML4Q96GE6 196 aa9.25□□□□□ -0.93
USP54-212ENST00000480210 NACC1Q96RE7 527 aa9.25□□□□□ -0.93
USP54-212ENST00000480210 PCYT2Q99447 389 aa9.25□□□□□ -0.93
USP54-212ENST00000480210 EIF2AK1Q9BQI3 630 aaKnown RBP9.25□□□□□ -0.93
USP54-212ENST00000480210 PYM1Q9BRP8 204 aaKnown RBP9.25□□□□□ -0.93
USP54-212ENST00000480210 NIFKQ9BYG3 293 aaKnown RBP9.25□□□□□ -0.93
USP54-212ENST00000480210 CCSER1Q9C0I3 900 aa9.25□□□□□ -0.93
USP54-212ENST00000480210 PDCL3Q9H2J4 239 aa9.25□□□□□ -0.93
USP54-212ENST00000480210 ANKEF1Q9NU02 776 aa9.25□□□□□ -0.93
USP54-212ENST00000480210 CCDC39Q9UFE4 941 aa9.25□□□□□ -0.93
USP54-212ENST00000480210 GTF2IRD1Q9UHL9 959 aa9.25□□□□□ -0.93
USP54-212ENST00000480210 HTTP42858 3142 aa9.25□□□□□ -0.93
USP54-212ENST00000480210 C17orf102A2RUQ5 167 aa9.24□□□□□ -0.93
USP54-212ENST00000480210 VWA3AA6NCI4 1184 aa9.24□□□□□ -0.93
USP54-212ENST00000480210 EML1O00423 815 aa9.24□□□□□ -0.93
USP54-212ENST00000480210 GAS2O43903 313 aaKnown RBP9.24□□□□□ -0.93
USP54-212ENST00000480210 SORBS3O60504 671 aa9.24□□□□□ -0.93
USP54-212ENST00000480210 PARNO95453 639 aaKnown RBP9.24□□□□□ -0.93
USP54-212ENST00000480210 OATP04181 439 aa9.24□□□□□ -0.93
USP54-212ENST00000480210 UBA7P41226 1012 aa9.24□□□□□ -0.93
USP54-212ENST00000480210 SOX10P56693 466 aa9.24□□□□□ -0.93
USP54-212ENST00000480210 CDC42EP1Q00587 391 aa9.24□□□□□ -0.93
USP54-212ENST00000480210 DNM1Q05193 864 aaKnown RBP9.24□□□□□ -0.93
USP54-212ENST00000480210 PLCB4Q15147 1175 aa9.24□□□□□ -0.93
USP54-212ENST00000480210 HYIQ5T013 277 aa9.24□□□□□ -0.93
USP54-212ENST00000480210 FAM173BQ6P4H8 233 aa9.24□□□□□ -0.93
USP54-212ENST00000480210 CCDC60Q8IWA6 550 aaPredicted RBP9.24□□□□□ -0.93
USP54-212ENST00000480210 NME8Q8N427 588 aa9.24□□□□□ -0.93
USP54-212ENST00000480210 CCDC155Q8N6L0 562 aa9.24□□□□□ -0.93
USP54-212ENST00000480210 SPATA32Q96LK8 384 aa9.24□□□□□ -0.93
USP54-212ENST00000480210 TFIP11Q9UBB9 837 aaKnown RBP9.24□□□□□ -0.93
USP54-212ENST00000480210 CENPFP49454 3210 aa9.24□□□□□ -0.93
USP54-212ENST00000480210 ALPK3Q96L96 1907 aa9.23□□□□□ -0.93
USP54-212ENST00000480210 POTEMA6NI47 508 aa9.23□□□□□ -0.93
USP54-212ENST00000480210 CAND2O75155 1236 aa9.23□□□□□ -0.93
USP54-212ENST00000480210 ZNF286BP0CG31 522 aa9.23□□□□□ -0.93
USP54-212ENST00000480210 SMIM10L2AP0DMW4 78 aa9.23□□□□□ -0.93
USP54-212ENST00000480210 SMIM10L2BP0DMW5 78 aa9.23□□□□□ -0.93
USP54-212ENST00000480210 TMOD1P28289 359 aa9.23□□□□□ -0.93
USP54-212ENST00000480210 HOXC8P31273 242 aa9.23□□□□□ -0.93
USP54-212ENST00000480210 CCT6AP40227 531 aaKnown RBP9.23□□□□□ -0.93
USP54-212ENST00000480210 IRX5P78411 483 aaPredicted RBP9.23□□□□□ -0.93
USP54-212ENST00000480210 CEBPZQ03701 1054 aaKnown RBP9.23□□□□□ -0.93
USP54-212ENST00000480210 PPFIA1Q13136 1202 aa9.23□□□□□ -0.93
USP54-212ENST00000480210 PTK7Q13308 1070 aa9.23□□□□□ -0.93
USP54-212ENST00000480210 FOXD4L5Q5VV16 416 aaPredicted RBP9.23□□□□□ -0.93
USP54-212ENST00000480210 ADALQ6DHV7 355 aa9.23□□□□□ -0.93
USP54-212ENST00000480210 TAF2Q6P1X5 1199 aa9.23□□□□□ -0.93
USP54-212ENST00000480210 RPAINQ86UA6 219 aa9.23□□□□□ -0.93
USP54-212ENST00000480210 RSPH3Q86UC2 560 aa9.23□□□□□ -0.93
USP54-212ENST00000480210 CATSPER3Q86XQ3 398 aa9.23□□□□□ -0.93
USP54-212ENST00000480210 TPH2Q8IWU9 490 aa9.23□□□□□ -0.93
USP54-212ENST00000480210 RETREG2Q8NC44 543 aa9.23□□□□□ -0.93
USP54-212ENST00000480210 CAGE1Q8TC20 777 aa9.23□□□□□ -0.93
USP54-212ENST00000480210 SNX29Q8TEQ0 813 aa9.23□□□□□ -0.93
USP54-212ENST00000480210 DIS3LQ8TF46 1054 aaKnown RBP9.23□□□□□ -0.93
USP54-212ENST00000480210 FOXD4L4Q8WXT5 416 aaPredicted RBP9.23□□□□□ -0.93
USP54-212ENST00000480210 GJA10Q969M2 543 aa9.23□□□□□ -0.93
USP54-212ENST00000480210 DYDC2Q96IM9 177 aa9.23□□□□□ -0.93
USP54-212ENST00000480210 CDK5RAP3Q96JB5 506 aa9.23□□□□□ -0.93
USP54-212ENST00000480210 LXNQ9BS40 222 aa9.23□□□□□ -0.93
USP54-212ENST00000480210 RNPEPQ9H4A4 650 aa9.23□□□□□ -0.93
USP54-212ENST00000480210 FAM13BQ9NYF5 915 aa9.23□□□□□ -0.93
USP54-212ENST00000480210 HDAC6Q9UBN7 1215 aa9.23□□□□□ -0.93
USP54-212ENST00000480210 KCNG1Q9UIX4 513 aa9.23□□□□□ -0.93
USP54-212ENST00000480210 FBXO2Q9UK22 296 aaPredicted RBP9.23□□□□□ -0.93
USP54-212ENST00000480210 DBR1Q9UK59 544 aaKnown RBP9.23□□□□□ -0.93
USP54-212ENST00000480210 DNM3Q9UQ16 869 aa9.23□□□□□ -0.93
USP54-212ENST00000480210 TRPC6Q9Y210 931 aa9.23□□□□□ -0.93
USP54-212ENST00000480210 NOD1Q9Y239 953 aa9.23□□□□□ -0.93
USP54-212ENST00000480210 NR2E3Q9Y5X4 410 aa9.23□□□□□ -0.93
USP54-212ENST00000480210 ARID2Q68CP9 1835 aa9.22□□□□□ -0.93
USP54-212ENST00000480210 MBLAC1A4D2B0 266 aaPredicted RBP9.22□□□□□ -0.93
USP54-212ENST00000480210 DDX11L8A8MPP1 907 aa9.22□□□□□ -0.93
USP54-212ENST00000480210 CD4P01730 458 aa9.22□□□□□ -0.93
USP54-212ENST00000480210 SPATA31C1P0DKV0 1188 aa9.22□□□□□ -0.93
USP54-212ENST00000480210 INSRRP14616 1297 aa9.22□□□□□ -0.93
USP54-212ENST00000480210 ATP4AP20648 1035 aa9.22□□□□□ -0.93
USP54-212ENST00000480210 PTGS1P23219 599 aa9.22□□□□□ -0.93
USP54-212ENST00000480210 MARCKSP29966 332 aaPredicted RBP9.22□□□□□ -0.93
USP54-212ENST00000480210 YWHABP31946 246 aaKnown RBP9.22□□□□□ -0.93
USP54-212ENST00000480210 RFC5P40937 340 aa9.22□□□□□ -0.93
USP54-212ENST00000480210 DNM2P50570 870 aa9.22□□□□□ -0.93
USP54-212ENST00000480210 RTP1P59025 263 aa9.22□□□□□ -0.93
USP54-212ENST00000480210 PSMC6P62333 389 aa9.22□□□□□ -0.93
USP54-212ENST00000480210 ADAM17P78536 824 aa9.22□□□□□ -0.93
USP54-212ENST00000480210 PRKCEQ02156 737 aa9.22□□□□□ -0.93
USP54-212ENST00000480210 BFSP2Q13515 415 aa9.22□□□□□ -0.93
USP54-212ENST00000480210 CTTNQ14247 550 aaKnown RBP9.22□□□□□ -0.93
USP54-212ENST00000480210 GRIK4Q16099 956 aa9.22□□□□□ -0.93
USP54-212ENST00000480210 IL17AQ16552 155 aa9.22□□□□□ -0.93
USP54-212ENST00000480210 PTGISQ16647 500 aa9.22□□□□□ -0.93
USP54-212ENST00000480210 FAM47CQ5HY64 1035 aa9.22□□□□□ -0.93
USP54-212ENST00000480210 CCDC73Q6ZRK6 1079 aa9.22□□□□□ -0.93
USP54-212ENST00000480210 CABP7Q86V35 215 aa9.22□□□□□ -0.93
USP54-212ENST00000480210 FAM126BQ8IXS8 530 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms