RNA–Protein interactions for RNA: ENST00000477537.1

HLA-DMB-260, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

Gene HLA-DMB, Length 1,919 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-260ENST00000477537 EPHA7Q15375 998 aa12.13□□□□□ -0.47
HLA-DMB-260ENST00000477537 SFMBT2Q5VUG0 894 aa12.13□□□□□ -0.47
HLA-DMB-260ENST00000477537 FRMD5Q7Z6J6 570 aa12.13□□□□□ -0.47
HLA-DMB-260ENST00000477537 CTAGE6Q86UF2 777 aa12.13□□□□□ -0.47
HLA-DMB-260ENST00000477537 CTAGE4Q8IX94 777 aa12.13□□□□□ -0.47
HLA-DMB-260ENST00000477537 CPXCR1Q8N123 301 aa12.13□□□□□ -0.47
HLA-DMB-260ENST00000477537 KRT222Q8N1A0 295 aa12.13□□□□□ -0.47
HLA-DMB-260ENST00000477537 MYCT1Q8N699 235 aa12.13□□□□□ -0.47
HLA-DMB-260ENST00000477537 PRPF38AQ8NAV1 312 aaKnown RBP12.13□□□□□ -0.47
HLA-DMB-260ENST00000477537 CLEC4DQ8WXI8 215 aa12.13□□□□□ -0.47
HLA-DMB-260ENST00000477537 LPAR1Q92633 364 aa12.13□□□□□ -0.47
HLA-DMB-260ENST00000477537 SECISBP2LQ93073 1101 aaKnown RBP12.13□□□□□ -0.47
HLA-DMB-260ENST00000477537 PURBQ96QR8 312 aaKnown RBP12.13□□□□□ -0.47
HLA-DMB-260ENST00000477537 NACC1Q96RE7 527 aa12.13□□□□□ -0.47
HLA-DMB-260ENST00000477537 DEFB129Q9H1M3 183 aa12.13□□□□□ -0.47
HLA-DMB-260ENST00000477537 FAM53CQ9NYF3 392 aa12.13□□□□□ -0.47
HLA-DMB-260ENST00000477537 COL20A1Q9P218 1284 aa12.13□□□□□ -0.47
HLA-DMB-260ENST00000477537 ARMCX3Q9UH62 379 aaPredicted RBP12.13□□□□□ -0.47
HLA-DMB-260ENST00000477537 ASTN1O14525 1302 aa12.13□□□□□ -0.47
HLA-DMB-260ENST00000477537 RPTORQ8N122 1335 aa12.13□□□□□ -0.47
HLA-DMB-260ENST00000477537 DDX39AO00148 427 aaKnown RBP12.13□□□□□ -0.47
HLA-DMB-260ENST00000477537 IPO5O00410 1097 aaKnown RBP12.13□□□□□ -0.47
HLA-DMB-260ENST00000477537 ZRANB2O95218 330 aaKnown RBP eCLIP12.13□□□□□ -0.47
HLA-DMB-260ENST00000477537 LCA5LO95447 670 aa12.13□□□□□ -0.47
HLA-DMB-260ENST00000477537 NR3C1P04150 777 aa12.13□□□□□ -0.47
HLA-DMB-260ENST00000477537 ALAS1P13196 640 aa12.13□□□□□ -0.47
HLA-DMB-260ENST00000477537 MUTP22033 750 aa12.13□□□□□ -0.47
HLA-DMB-260ENST00000477537 MCF2L2Q86YR7 1114 aa12.13□□□□□ -0.47
HLA-DMB-260ENST00000477537 KIAA1683Q9H0B3 1180 aa12.13□□□□□ -0.47
HLA-DMB-260ENST00000477537 NUCKS1Q9H1E3 243 aaKnown RBP12.13□□□□□ -0.47
HLA-DMB-260ENST00000477537 RAVER2Q9HCJ3 691 aaKnown RBP12.13□□□□□ -0.47
HLA-DMB-260ENST00000477537 OLFML3Q9NRN5 406 aa12.13□□□□□ -0.47
HLA-DMB-260ENST00000477537 PKD2L1Q9P0L9 805 aa12.13□□□□□ -0.47
HLA-DMB-260ENST00000477537 WRAP73Q9P2S5 460 aaPredicted RBP12.13□□□□□ -0.47
HLA-DMB-260ENST00000477537 FHOD1Q9Y613 1164 aa12.13□□□□□ -0.47
HLA-DMB-260ENST00000477537 ASTN2O75129 1339 aaPredicted RBP12.12□□□□□ -0.47
HLA-DMB-260ENST00000477537 FRMPD4Q14CM0 1322 aa12.12□□□□□ -0.47
HLA-DMB-260ENST00000477537 POTEB2H3BUK9 544 aa12.12□□□□□ -0.47
HLA-DMB-260ENST00000477537 CLIC2O15247 247 aa12.12□□□□□ -0.47
HLA-DMB-260ENST00000477537 CTNND1O60716 968 aaKnown RBP12.12□□□□□ -0.47
HLA-DMB-260ENST00000477537 PNMA6AP0CW24 399 aaPredicted RBP12.12□□□□□ -0.47
HLA-DMB-260ENST00000477537 ITGB5P18084 799 aa12.12□□□□□ -0.47
HLA-DMB-260ENST00000477537 RPS12P25398 132 aaKnown RBP12.12□□□□□ -0.47
HLA-DMB-260ENST00000477537 RPL13P26373 211 aaKnown RBP12.12□□□□□ -0.47
HLA-DMB-260ENST00000477537 NMT1P30419 496 aaKnown RBP12.12□□□□□ -0.47
HLA-DMB-260ENST00000477537 MAGEA1P43355 309 aa12.12□□□□□ -0.47
HLA-DMB-260ENST00000477537 GMPSP49915 693 aaPredicted RBP12.12□□□□□ -0.47
HLA-DMB-260ENST00000477537 GFPT1Q06210 699 aaPredicted RBP12.12□□□□□ -0.47
HLA-DMB-260ENST00000477537 KCNA1Q09470 495 aa12.12□□□□□ -0.47
HLA-DMB-260ENST00000477537 TDRD12Q587J7 1177 aaKnown RBP12.12□□□□□ -0.47
HLA-DMB-260ENST00000477537 PAPD7Q5XG87 772 aaKnown RBP12.12□□□□□ -0.47
HLA-DMB-260ENST00000477537 HGSNATQ68CP4 663 aa12.12□□□□□ -0.47
HLA-DMB-260ENST00000477537 CC2D1AQ6P1N0 951 aaPredicted RBP12.12□□□□□ -0.47
HLA-DMB-260ENST00000477537 SAMD7Q7Z3H4 446 aa12.12□□□□□ -0.47
HLA-DMB-260ENST00000477537 MICALL2Q8IY33 904 aa12.12□□□□□ -0.47
HLA-DMB-260ENST00000477537 BANK1Q8NDB2 785 aa12.12□□□□□ -0.47
HLA-DMB-260ENST00000477537 IL31RAQ8NI17 732 aa12.12□□□□□ -0.47
HLA-DMB-260ENST00000477537 SYN2Q92777 582 aaPredicted RBP12.12□□□□□ -0.47
HLA-DMB-260ENST00000477537 LXNQ9BS40 222 aa12.12□□□□□ -0.47
HLA-DMB-260ENST00000477537 GANQ9H2C0 597 aa12.12□□□□□ -0.47
HLA-DMB-260ENST00000477537 ANKZF1Q9H8Y5 726 aa12.12□□□□□ -0.47
HLA-DMB-260ENST00000477537 PRDM10Q9NQV6 1147 aa12.12□□□□□ -0.47
HLA-DMB-260ENST00000477537 HOMER2Q9NSB8 354 aa12.12□□□□□ -0.47
HLA-DMB-260ENST00000477537 SAR1BQ9Y6B6 198 aa12.12□□□□□ -0.47
HLA-DMB-260ENST00000477537 MYH11P35749 1972 aa12.12□□□□□ -0.47
HLA-DMB-260ENST00000477537 LOXHD1Q8IVV2 1947 aa12.12□□□□□ -0.47
HLA-DMB-260ENST00000477537 SSU72P8A0A1W2PR75 194 aa12.11□□□□□ -0.47
HLA-DMB-260ENST00000477537 EIF3DO15371 548 aaKnown RBP eCLIP12.11□□□□□ -0.47
HLA-DMB-260ENST00000477537 SLC16A3O15427 465 aaKnown RBP12.11□□□□□ -0.47
HLA-DMB-260ENST00000477537 SRGAP2O75044 1071 aa12.11□□□□□ -0.47
HLA-DMB-260ENST00000477537 FLOT1O75955 427 aa12.11□□□□□ -0.47
HLA-DMB-260ENST00000477537 AKAP3O75969 853 aa12.11□□□□□ -0.47
HLA-DMB-260ENST00000477537 AFPP02771 609 aaKnown RBP12.11□□□□□ -0.47
HLA-DMB-260ENST00000477537 SERPING1P05155 500 aa12.11□□□□□ -0.47
HLA-DMB-260ENST00000477537 EPB41P11171 864 aaKnown RBP12.11□□□□□ -0.47
HLA-DMB-260ENST00000477537 LMNB1P20700 586 aa12.11□□□□□ -0.47
HLA-DMB-260ENST00000477537 TUBB4BP68371 445 aa12.11□□□□□ -0.47
HLA-DMB-260ENST00000477537 ASTE1Q2TB18 679 aaPredicted RBP12.11□□□□□ -0.47
HLA-DMB-260ENST00000477537 SLC9C1Q4G0N8 1177 aa12.11□□□□□ -0.47
HLA-DMB-260ENST00000477537 TBC1D10BQ4KMP7 808 aaPredicted RBP12.11□□□□□ -0.47
HLA-DMB-260ENST00000477537 MUM1L1Q5H9M0 696 aa12.11□□□□□ -0.47
HLA-DMB-260ENST00000477537 B3GNT9Q6UX72 402 aa12.11□□□□□ -0.47
HLA-DMB-260ENST00000477537 MIER3Q7Z3K6 550 aa12.11□□□□□ -0.47
HLA-DMB-260ENST00000477537 SMAP1Q8IYB5 467 aaPredicted RBP12.11□□□□□ -0.47
HLA-DMB-260ENST00000477537 RIT2Q99578 217 aa12.11□□□□□ -0.47
HLA-DMB-260ENST00000477537 MLXIPQ9HAP2 919 aa12.11□□□□□ -0.47
HLA-DMB-260ENST00000477537 PARVGQ9HBI0 331 aa12.11□□□□□ -0.47
HLA-DMB-260ENST00000477537 GINM1Q9NU53 330 aa12.11□□□□□ -0.47
HLA-DMB-260ENST00000477537 RNF181Q9P0P0 153 aa12.11□□□□□ -0.47
HLA-DMB-260ENST00000477537 GJA3Q9Y6H8 435 aa12.11□□□□□ -0.47
HLA-DMB-260ENST00000477537 ZNF541Q9H0D2 1346 aa12.11□□□□□ -0.47
HLA-DMB-260ENST00000477537 ANO9A1A5B4 782 aa12.11□□□□□ -0.47
HLA-DMB-260ENST00000477537 TLR2O60603 784 aa12.11□□□□□ -0.47
HLA-DMB-260ENST00000477537 TACC1O75410 805 aa12.11□□□□□ -0.47
HLA-DMB-260ENST00000477537 MOCS3O95396 460 aa12.11□□□□□ -0.47
HLA-DMB-260ENST00000477537 RHOXF2BP0C7M4 288 aa12.11□□□□□ -0.47
HLA-DMB-260ENST00000477537 XRCC5P13010 732 aaKnown RBP12.11□□□□□ -0.47
HLA-DMB-260ENST00000477537 CASP4P49662 377 aa12.11□□□□□ -0.47
HLA-DMB-260ENST00000477537 MTMR2Q13614 643 aa12.11□□□□□ -0.47
HLA-DMB-260ENST00000477537 RAPGEF1Q13905 1077 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms