RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 HIDE1A8MVS5 230 aa9.43□□□□□ -0.9
USP54-211ENST00000474929 GOLIM4O00461 696 aa9.43□□□□□ -0.9
USP54-211ENST00000474929 NOP56O00567 594 aaKnown RBP9.43□□□□□ -0.9
USP54-211ENST00000474929 NCAM2O15394 837 aa9.43□□□□□ -0.9
USP54-211ENST00000474929 LGALS2P05162 132 aa9.43□□□□□ -0.9
USP54-211ENST00000474929 CT47B1P0C2W7 299 aaPredicted RBP9.43□□□□□ -0.9
USP54-211ENST00000474929 TGFB3P10600 412 aa9.43□□□□□ -0.9
USP54-211ENST00000474929 SARSP49591 514 aaKnown RBP9.43□□□□□ -0.9
USP54-211ENST00000474929 STARD6P59095 220 aa9.43□□□□□ -0.9
USP54-211ENST00000474929 ARHGAP4P98171 946 aa9.43□□□□□ -0.9
USP54-211ENST00000474929 MGAT3Q09327 533 aa9.43□□□□□ -0.9
USP54-211ENST00000474929 DDX10Q13206 875 aaKnown RBP9.43□□□□□ -0.9
USP54-211ENST00000474929 POLA2Q14181 598 aa9.43□□□□□ -0.9
USP54-211ENST00000474929 UBE3CQ15386 1083 aa9.43□□□□□ -0.9
USP54-211ENST00000474929 FBXO47Q5MNV8 452 aa9.43□□□□□ -0.9
USP54-211ENST00000474929 ODR4Q5SWX8 454 aa9.43□□□□□ -0.9
USP54-211ENST00000474929 CELF3Q5SZQ8 465 aaKnown RBP9.43□□□□□ -0.9
USP54-211ENST00000474929 MYSM1Q5VVJ2 828 aa9.43□□□□□ -0.9
USP54-211ENST00000474929 POTEGQ6S5H5 508 aa9.43□□□□□ -0.9
USP54-211ENST00000474929 BTNL9Q6UXG8 535 aa9.43□□□□□ -0.9
USP54-211ENST00000474929 RSPO2Q6UXX9 243 aaPredicted RBP9.43□□□□□ -0.9
USP54-211ENST00000474929 CYP26C1Q6V0L0 522 aa9.43□□□□□ -0.9
USP54-211ENST00000474929 CABP7Q86V35 215 aa9.43□□□□□ -0.9
USP54-211ENST00000474929 MCF2L2Q86YR7 1114 aa9.43□□□□□ -0.9
USP54-211ENST00000474929 EAF2Q96CJ1 260 aaPredicted RBP9.43□□□□□ -0.9
USP54-211ENST00000474929 IER2Q9BTL4 223 aa9.43□□□□□ -0.9
USP54-211ENST00000474929 SLC2A4RGQ9NR83 387 aa9.43□□□□□ -0.9
USP54-211ENST00000474929 C1orf112Q9NSG2 853 aa9.43□□□□□ -0.9
USP54-211ENST00000474929 CDH22Q9UJ99 828 aa9.43□□□□□ -0.9
USP54-211ENST00000474929 NOP58Q9Y2X3 529 aaKnown RBP9.43□□□□□ -0.9
USP54-211ENST00000474929 PCDHB7Q9Y5E2 793 aa9.43□□□□□ -0.9
USP54-211ENST00000474929 KANSL1LA0AUZ9 987 aa9.42□□□□□ -0.9
USP54-211ENST00000474929 HOXA2O43364 376 aa9.42□□□□□ -0.9
USP54-211ENST00000474929 NARSO43776 548 aaKnown RBP9.42□□□□□ -0.9
USP54-211ENST00000474929 GGPS1O95749 300 aa9.42□□□□□ -0.9
USP54-211ENST00000474929 CHRNA1P02708 482 aa9.42□□□□□ -0.9
USP54-211ENST00000474929 SNAP25P60880 206 aa9.42□□□□□ -0.9
USP54-211ENST00000474929 PRKCQQ04759 706 aa9.42□□□□□ -0.9
USP54-211ENST00000474929 PAK2Q13177 524 aa9.42□□□□□ -0.9
USP54-211ENST00000474929 HSDL1Q3SXM5 330 aa9.42□□□□□ -0.9
USP54-211ENST00000474929 IER5Q5VY09 327 aa9.42□□□□□ -0.9
USP54-211ENST00000474929 GPR149Q86SP6 731 aa9.42□□□□□ -0.9
USP54-211ENST00000474929 MRPL43Q8N983 215 aaKnown RBP9.42□□□□□ -0.9
USP54-211ENST00000474929 GPR152Q8TDT2 470 aa9.42□□□□□ -0.9
USP54-211ENST00000474929 SSH3Q8TE77 659 aa9.42□□□□□ -0.9
USP54-211ENST00000474929 LMBR1Q8WVP7 490 aa9.42□□□□□ -0.9
USP54-211ENST00000474929 LINC01599Q8WXQ3 324 aa9.42□□□□□ -0.9
USP54-211ENST00000474929 ARHGAP45Q92619 1136 aa9.42□□□□□ -0.9
USP54-211ENST00000474929 ZNF558Q96NG5 402 aa9.42□□□□□ -0.9
USP54-211ENST00000474929 KLHL5Q96PQ7 755 aa9.42□□□□□ -0.9
USP54-211ENST00000474929 DNAJC2Q99543 621 aaKnown RBP9.42□□□□□ -0.9
USP54-211ENST00000474929 MYL10Q9BUA6 226 aa9.42□□□□□ -0.9
USP54-211ENST00000474929 OSBPL7Q9BZF2 842 aa9.42□□□□□ -0.9
USP54-211ENST00000474929 MLXIPQ9HAP2 919 aa9.42□□□□□ -0.9
USP54-211ENST00000474929 PRMT8Q9NR22 394 aaPredicted RBP9.42□□□□□ -0.9
USP54-211ENST00000474929 EPS15L1Q9UBC2 864 aa9.42□□□□□ -0.9
USP54-211ENST00000474929 DPP7Q9UHL4 492 aa9.42□□□□□ -0.9
USP54-211ENST00000474929 STX8Q9UNK0 236 aa9.42□□□□□ -0.9
USP54-211ENST00000474929 COL4A3Q01955 1670 aa9.42□□□□□ -0.9
USP54-211ENST00000474929 MYH7P12883 1935 aa9.41□□□□□ -0.9
USP54-211ENST00000474929 FNDC1Q4ZHG4 1894 aaPredicted RBP9.41□□□□□ -0.9
USP54-211ENST00000474929 C2orf71A6NGG8 1288 aa9.41□□□□□ -0.9
USP54-211ENST00000474929 TBKBP1A7MCY6 615 aa9.41□□□□□ -0.9
USP54-211ENST00000474929 MINDY4BA8MYZ0 360 aa9.41□□□□□ -0.9
USP54-211ENST00000474929 CLASP2O75122 1294 aaKnown RBP9.41□□□□□ -0.9
USP54-211ENST00000474929 APOBRQ0VD83 1088 aa9.41□□□□□ -0.9
USP54-211ENST00000474929 PTPN14Q15678 1187 aa9.41□□□□□ -0.9
USP54-211ENST00000474929 LETM2Q2VYF4 491 aa9.41□□□□□ -0.9
USP54-211ENST00000474929 AASDHQ4L235 1098 aaPredicted RBP9.41□□□□□ -0.9
USP54-211ENST00000474929 ARHGEF16Q5VV41 709 aa9.41□□□□□ -0.9
USP54-211ENST00000474929 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.41□□□□□ -0.9
USP54-211ENST00000474929 AACSQ86V21 672 aa9.41□□□□□ -0.9
USP54-211ENST00000474929 LRRC43Q8N309 656 aa9.41□□□□□ -0.9
USP54-211ENST00000474929 C12orf50Q8NA57 414 aaPredicted RBP9.41□□□□□ -0.9
USP54-211ENST00000474929 RMDN3Q96TC7 470 aa9.41□□□□□ -0.9
USP54-211ENST00000474929 RHOBTB2Q9BYZ6 727 aa9.41□□□□□ -0.9
USP54-211ENST00000474929 RXFP3Q9NSD7 469 aa9.41□□□□□ -0.9
USP54-211ENST00000474929 STK39Q9UEW8 545 aa9.41□□□□□ -0.9
USP54-211ENST00000474929 NOB1Q9ULX3 412 aaKnown RBP9.41□□□□□ -0.9
USP54-211ENST00000474929 ABCB11O95342 1321 aa9.4□□□□□ -0.9
USP54-211ENST00000474929 WEE2P0C1S8 567 aa9.4□□□□□ -0.9
USP54-211ENST00000474929 ARP10275 920 aa9.4□□□□□ -0.9
USP54-211ENST00000474929 GNAT2P19087 354 aa9.4□□□□□ -0.9
USP54-211ENST00000474929 CD52P31358 61 aa9.4□□□□□ -0.9
USP54-211ENST00000474929 CA8P35219 290 aa9.4□□□□□ -0.9
USP54-211ENST00000474929 RPS9P46781 194 aaKnown RBP9.4□□□□□ -0.9
USP54-211ENST00000474929 TDO2P48775 406 aa9.4□□□□□ -0.9
USP54-211ENST00000474929 ADAM17P78536 824 aa9.4□□□□□ -0.9
USP54-211ENST00000474929 MRPS6P82932 125 aaKnown RBP9.4□□□□□ -0.9
USP54-211ENST00000474929 SLC44A3Q8N4M1 653 aa9.4□□□□□ -0.9
USP54-211ENST00000474929 RSPH1Q8WYR4 309 aa9.4□□□□□ -0.9
USP54-211ENST00000474929 NELL2Q99435 816 aa9.4□□□□□ -0.9
USP54-211ENST00000474929 SETD4Q9NVD3 440 aa9.4□□□□□ -0.9
USP54-211ENST00000474929 PAG1Q9NWQ8 432 aa9.4□□□□□ -0.9
USP54-211ENST00000474929 SPG21Q9NZD8 308 aa9.4□□□□□ -0.9
USP54-211ENST00000474929 IRAK3Q9Y616 596 aa9.4□□□□□ -0.9
USP54-211ENST00000474929 CDY2AQ9Y6F7 541 aa9.4□□□□□ -0.9
USP54-211ENST00000474929 BPTFQ12830 3046 aa9.4□□□□□ -0.9
USP54-211ENST00000474929 KAT6AQ92794 2004 aa9.39□□□□□ -0.91
USP54-211ENST00000474929 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms