RNA–Protein interactions for RNA: ENST00000474038.1

LIMS1-212, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 679 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-212ENST00000474038 SERINC5Q86VE9 423 aa17.08■□□□□ 0.32
LIMS1-212ENST00000474038 MAFAQ8NHW3 353 aaPredicted RBP17.08■□□□□ 0.32
LIMS1-212ENST00000474038 LMBR1Q8WVP7 490 aa17.08■□□□□ 0.32
LIMS1-212ENST00000474038 UNC45AQ9H3U1 944 aa17.08■□□□□ 0.32
LIMS1-212ENST00000474038 ZNF302Q9NR11 478 aa17.08■□□□□ 0.32
LIMS1-212ENST00000474038 SMC3Q9UQE7 1217 aa17.08■□□□□ 0.32
LIMS1-212ENST00000474038 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.08■□□□□ 0.32
LIMS1-212ENST00000474038 PCDHA10Q9Y5I2 948 aa17.08■□□□□ 0.32
LIMS1-212ENST00000474038 UNC80Q8N2C7 3258 aa17.08■□□□□ 0.32
LIMS1-212ENST00000474038 CHD9Q3L8U1 2897 aa17.08■□□□□ 0.32
LIMS1-212ENST00000474038 SIP14410 1827 aa17.07■□□□□ 0.32
LIMS1-212ENST00000474038 A0A0C4DFX4 3053 aa17.07■□□□□ 0.32
LIMS1-212ENST00000474038 WDR64B1ANS9 1081 aa17.07■□□□□ 0.32
LIMS1-212ENST00000474038 KIF28PB7ZC32 967 aa17.07■□□□□ 0.32
LIMS1-212ENST00000474038 CHMP2AO43633 222 aa17.07■□□□□ 0.32
LIMS1-212ENST00000474038 PSAPP07602 524 aa17.07■□□□□ 0.32
LIMS1-212ENST00000474038 GNAT1P11488 350 aa17.07■□□□□ 0.32
LIMS1-212ENST00000474038 ATP2A2P16615 1042 aaKnown RBP17.07■□□□□ 0.32
LIMS1-212ENST00000474038 SLC26A2P50443 739 aa17.07■□□□□ 0.32
LIMS1-212ENST00000474038 PPFIA1Q13136 1202 aa17.07■□□□□ 0.32
LIMS1-212ENST00000474038 B3GNT9Q6UX72 402 aa17.07■□□□□ 0.32
LIMS1-212ENST00000474038 POTEDQ86YR6 584 aa17.07■□□□□ 0.32
LIMS1-212ENST00000474038 HAS1Q92839 578 aa17.07■□□□□ 0.32
LIMS1-212ENST00000474038 FAM20AQ96MK3 541 aa17.07■□□□□ 0.32
LIMS1-212ENST00000474038 DISC1Q9NRI5 854 aa17.07■□□□□ 0.32
LIMS1-212ENST00000474038 SAMM50Q9Y512 469 aa17.07■□□□□ 0.32
LIMS1-212ENST00000474038 PRUNE2Q8WUY3 3088 aa17.07■□□□□ 0.32
LIMS1-212ENST00000474038 TBX3O15119 743 aa17.06■□□□□ 0.32
LIMS1-212ENST00000474038 NBNO60934 754 aa17.06■□□□□ 0.32
LIMS1-212ENST00000474038 INSRRP14616 1297 aa17.06■□□□□ 0.32
LIMS1-212ENST00000474038 ATP4AP20648 1035 aa17.06■□□□□ 0.32
LIMS1-212ENST00000474038 SFNP31947 248 aa17.06■□□□□ 0.32
LIMS1-212ENST00000474038 JAK3P52333 1124 aa17.06■□□□□ 0.32
LIMS1-212ENST00000474038 GNL2Q13823 731 aaKnown RBP17.06■□□□□ 0.32
LIMS1-212ENST00000474038 GRIK4Q16099 956 aa17.06■□□□□ 0.32
LIMS1-212ENST00000474038 ZNF618Q5T7W0 954 aa17.06■□□□□ 0.32
LIMS1-212ENST00000474038 PDXDC2PQ6P474 469 aa17.06■□□□□ 0.32
LIMS1-212ENST00000474038 TRAF7Q6Q0C0 670 aa17.06■□□□□ 0.32
LIMS1-212ENST00000474038 NOSTRINQ8IVI9 506 aa17.06■□□□□ 0.32
LIMS1-212ENST00000474038 PRDM12Q9H4Q4 367 aa17.06■□□□□ 0.32
LIMS1-212ENST00000474038 GABBR1Q9UBS5 961 aa17.06■□□□□ 0.32
LIMS1-212ENST00000474038 TRPC6Q9Y210 931 aa17.06■□□□□ 0.32
LIMS1-212ENST00000474038 MAFBQ9Y5Q3 323 aaPredicted RBP17.06■□□□□ 0.32
LIMS1-212ENST00000474038 POTEB3A0JP26 581 aa17.05■□□□□ 0.32
LIMS1-212ENST00000474038 ATP2B1P20020 1258 aa17.05■□□□□ 0.32
LIMS1-212ENST00000474038 U2AF2P26368 475 aaKnown RBP eCLIP17.05■□□□□ 0.32
LIMS1-212ENST00000474038 MBTPS1Q14703 1052 aa17.05■□□□□ 0.32
LIMS1-212ENST00000474038 TCTN1Q2MV58 587 aa17.05■□□□□ 0.32
LIMS1-212ENST00000474038 MARCH8Q5T0T0 291 aa17.05■□□□□ 0.32
LIMS1-212ENST00000474038 POTEBQ6S5H4 581 aa17.05■□□□□ 0.32
LIMS1-212ENST00000474038 MIER3Q7Z3K6 550 aa17.05■□□□□ 0.32
LIMS1-212ENST00000474038 RDM1Q8NG50 284 aa17.05■□□□□ 0.32
LIMS1-212ENST00000474038 ATP8B4Q8TF62 1192 aa17.05■□□□□ 0.32
LIMS1-212ENST00000474038 SLC28A3Q9HAS3 691 aa17.05■□□□□ 0.32
LIMS1-212ENST00000474038 VAV3Q9UKW4 847 aa17.05■□□□□ 0.32
LIMS1-212ENST00000474038 CHD7Q9P2D1 2997 aa17.05■□□□□ 0.32
LIMS1-212ENST00000474038 PTPRSQ13332 1948 aa17.04■□□□□ 0.32
LIMS1-212ENST00000474038 IGSF9BQ9UPX0 1349 aa17.04■□□□□ 0.32
LIMS1-212ENST00000474038 RRN3P2A6NIE6 340 aa17.04■□□□□ 0.32
LIMS1-212ENST00000474038 K7ELQ4 463 aaPredicted RBP17.04■□□□□ 0.32
LIMS1-212ENST00000474038 CXCL10P02778 98 aa17.04■□□□□ 0.32
LIMS1-212ENST00000474038 THPOP40225 353 aa17.04■□□□□ 0.32
LIMS1-212ENST00000474038 IGBP1P78318 339 aa17.04■□□□□ 0.32
LIMS1-212ENST00000474038 PPP2R5CQ13362 524 aa17.04■□□□□ 0.32
LIMS1-212ENST00000474038 UGCGQ16739 394 aa17.04■□□□□ 0.32
LIMS1-212ENST00000474038 TNPO1Q92973 898 aaKnown RBP17.04■□□□□ 0.32
LIMS1-212ENST00000474038 SNX21Q969T3 373 aa17.04■□□□□ 0.32
LIMS1-212ENST00000474038 SLC9A7Q96T83 725 aa17.04■□□□□ 0.32
LIMS1-212ENST00000474038 TUBE1Q9UJT0 475 aa17.04■□□□□ 0.32
LIMS1-212ENST00000474038 PCDHA11Q9Y5I1 949 aa17.04■□□□□ 0.32
LIMS1-212ENST00000474038 MICAL3Q7RTP6 2002 aa17.03■□□□□ 0.32
LIMS1-212ENST00000474038 MBLAC1A4D2B0 266 aaPredicted RBP17.03■□□□□ 0.32
LIMS1-212ENST00000474038 EML1O00423 815 aa17.03■□□□□ 0.32
LIMS1-212ENST00000474038 MARCH6O60337 910 aa17.03■□□□□ 0.32
LIMS1-212ENST00000474038 HBP1O60381 514 aa17.03■□□□□ 0.32
LIMS1-212ENST00000474038 NEMFO60524 1076 aa17.03■□□□□ 0.32
LIMS1-212ENST00000474038 BAIAP3O94812 1187 aa17.03■□□□□ 0.32
LIMS1-212ENST00000474038 BAG4O95429 457 aaKnown RBP17.03■□□□□ 0.32
LIMS1-212ENST00000474038 CALCRLQ16602 461 aa17.03■□□□□ 0.32
LIMS1-212ENST00000474038 LARP1BQ659C4 914 aaKnown RBP17.03■□□□□ 0.32
LIMS1-212ENST00000474038 PPP2R2DQ66LE6 453 aa17.03■□□□□ 0.32
LIMS1-212ENST00000474038 CNKSR3Q6P9H4 555 aa17.03■□□□□ 0.32
LIMS1-212ENST00000474038 RUFY4Q6ZNE9 571 aa17.03■□□□□ 0.32
LIMS1-212ENST00000474038 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.03■□□□□ 0.32
LIMS1-212ENST00000474038 CKAP2LQ8IYA6 745 aa17.03■□□□□ 0.32
LIMS1-212ENST00000474038 SLFN12Q8IYM2 578 aa17.03■□□□□ 0.32
LIMS1-212ENST00000474038 TRAPPC12Q8WVT3 735 aa17.03■□□□□ 0.32
LIMS1-212ENST00000474038 ZBTB10Q96DT7 871 aa17.03■□□□□ 0.32
LIMS1-212ENST00000474038 ARID2Q68CP9 1835 aa17.03■□□□□ 0.32
LIMS1-212ENST00000474038 H3BQV1 296 aa17.02■□□□□ 0.32
LIMS1-212ENST00000474038 ZNF862O60290 1169 aa17.02■□□□□ 0.32
LIMS1-212ENST00000474038 PARNO95453 639 aaKnown RBP17.02■□□□□ 0.32
LIMS1-212ENST00000474038 CA3P07451 260 aa17.02■□□□□ 0.32
LIMS1-212ENST00000474038 MCM7P33993 719 aa17.02■□□□□ 0.32
LIMS1-212ENST00000474038 TRAPPC10P48553 1259 aa17.02■□□□□ 0.32
LIMS1-212ENST00000474038 WDR5P61964 334 aaKnown RBP17.02■□□□□ 0.32
LIMS1-212ENST00000474038 DEFB103AP81534 67 aa17.02■□□□□ 0.32
LIMS1-212ENST00000474038 SPIRE1Q08AE8 756 aa17.02■□□□□ 0.32
LIMS1-212ENST00000474038 ADGRE1Q14246 886 aa17.02■□□□□ 0.32
LIMS1-212ENST00000474038 TTC38Q5R3I4 469 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms