RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.54□□□□□ -0.24
SYNE1-221ENST00000472563 NME8Q8N427 588 aa13.54□□□□□ -0.24
SYNE1-221ENST00000472563 NECAB1Q8N987 351 aa13.54□□□□□ -0.24
SYNE1-221ENST00000472563 TRAPPC12Q8WVT3 735 aa13.54□□□□□ -0.24
SYNE1-221ENST00000472563 ZBTB10Q96DT7 871 aa13.54□□□□□ -0.24
SYNE1-221ENST00000472563 IFIH1Q9BYX4 1025 aaKnown RBP13.54□□□□□ -0.24
SYNE1-221ENST00000472563 FAM49AQ9H0Q0 323 aaPredicted RBP13.54□□□□□ -0.24
SYNE1-221ENST00000472563 SMIM35A0A1B0GVV1 85 aa13.53□□□□□ -0.24
SYNE1-221ENST00000472563 WDR64B1ANS9 1081 aa13.53□□□□□ -0.24
SYNE1-221ENST00000472563 LARGE1O95461 756 aa13.53□□□□□ -0.24
SYNE1-221ENST00000472563 TDP2O95551 362 aa13.53□□□□□ -0.24
SYNE1-221ENST00000472563 GHRP10912 638 aa13.53□□□□□ -0.24
SYNE1-221ENST00000472563 KLRC1P26715 233 aa13.53□□□□□ -0.24
SYNE1-221ENST00000472563 MRPS6P82932 125 aaKnown RBP13.53□□□□□ -0.24
SYNE1-221ENST00000472563 LPIN1Q14693 890 aa13.53□□□□□ -0.24
SYNE1-221ENST00000472563 LRCH2Q5VUJ6 765 aa13.53□□□□□ -0.24
SYNE1-221ENST00000472563 TMCO2Q7Z6W1 182 aaPredicted RBP13.53□□□□□ -0.24
SYNE1-221ENST00000472563 CKAP2LQ8IYA6 745 aa13.53□□□□□ -0.24
SYNE1-221ENST00000472563 BBXQ8WY36 941 aaPredicted RBP13.53□□□□□ -0.24
SYNE1-221ENST00000472563 DISC1Q9NRI5 854 aa13.53□□□□□ -0.24
SYNE1-221ENST00000472563 SAMM50Q9Y512 469 aa13.53□□□□□ -0.24
SYNE1-221ENST00000472563 CDY2AQ9Y6F7 541 aa13.53□□□□□ -0.24
SYNE1-221ENST00000472563 SQORQ9Y6N5 450 aa13.53□□□□□ -0.24
SYNE1-221ENST00000472563 COL1A2P08123 1366 aa13.53□□□□□ -0.24
SYNE1-221ENST00000472563 CHD7Q9P2D1 2997 aa13.52□□□□□ -0.24
SYNE1-221ENST00000472563 CCDC194A0A1B0GVG4 234 aa13.52□□□□□ -0.25
SYNE1-221ENST00000472563 GAS7O60861 476 aa13.52□□□□□ -0.25
SYNE1-221ENST00000472563 PSMD10O75832 226 aa13.52□□□□□ -0.25
SYNE1-221ENST00000472563 ARHGEF15O94989 841 aa13.52□□□□□ -0.25
SYNE1-221ENST00000472563 SFNP31947 248 aa13.52□□□□□ -0.25
SYNE1-221ENST00000472563 JAK3P52333 1124 aa13.52□□□□□ -0.25
SYNE1-221ENST00000472563 INF2Q27J81 1249 aa13.52□□□□□ -0.25
SYNE1-221ENST00000472563 C8orf34Q49A92 452 aa13.52□□□□□ -0.25
SYNE1-221ENST00000472563 FBXO47Q5MNV8 452 aa13.52□□□□□ -0.25
SYNE1-221ENST00000472563 TSHZ1Q6ZSZ6 1077 aa13.52□□□□□ -0.25
SYNE1-221ENST00000472563 MYOCDQ8IZQ8 938 aa13.52□□□□□ -0.25
SYNE1-221ENST00000472563 USP38Q8NB14 1042 aa13.52□□□□□ -0.25
SYNE1-221ENST00000472563 NSUN7Q8NE18 718 aaKnown RBP13.52□□□□□ -0.25
SYNE1-221ENST00000472563 RDM1Q8NG50 284 aa13.52□□□□□ -0.25
SYNE1-221ENST00000472563 TOP1MTQ969P6 601 aa13.52□□□□□ -0.25
SYNE1-221ENST00000472563 FAM167AQ96KS9 214 aa13.52□□□□□ -0.25
SYNE1-221ENST00000472563 TEKT3Q9BXF9 490 aa13.52□□□□□ -0.25
SYNE1-221ENST00000472563 GJB4Q9NTQ9 266 aa13.52□□□□□ -0.25
SYNE1-221ENST00000472563 GABBR1Q9UBS5 961 aa13.52□□□□□ -0.25
SYNE1-221ENST00000472563 INSL6Q9Y581 213 aa13.52□□□□□ -0.25
SYNE1-221ENST00000472563 IGSF9BQ9UPX0 1349 aa13.51□□□□□ -0.25
SYNE1-221ENST00000472563 KDM3AQ9Y4C1 1321 aa13.51□□□□□ -0.25
SYNE1-221ENST00000472563 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.51□□□□□ -0.25
SYNE1-221ENST00000472563 LCHNA4D1U4 455 aa13.51□□□□□ -0.25
SYNE1-221ENST00000472563 ZBTB42B2RXF5 422 aa13.51□□□□□ -0.25
SYNE1-221ENST00000472563 RBAK-RBAKDNI3L0D1 243 aa13.51□□□□□ -0.25
SYNE1-221ENST00000472563 M0QZ92 97 aa13.51□□□□□ -0.25
SYNE1-221ENST00000472563 DTNBO60941 627 aa13.51□□□□□ -0.25
SYNE1-221ENST00000472563 GCFC2P16383 781 aaKnown RBP13.51□□□□□ -0.25
SYNE1-221ENST00000472563 POU3F3P20264 500 aaPredicted RBP13.51□□□□□ -0.25
SYNE1-221ENST00000472563 HTRA4P83105 476 aaPredicted RBP13.51□□□□□ -0.25
SYNE1-221ENST00000472563 PPP4R3AQ6IN85 833 aa13.51□□□□□ -0.25
SYNE1-221ENST00000472563 B3GNT9Q6UX72 402 aa13.51□□□□□ -0.25
SYNE1-221ENST00000472563 FAM43BQ6ZT52 329 aaPredicted RBP13.51□□□□□ -0.25
SYNE1-221ENST00000472563 NEK8Q86SG6 692 aa13.51□□□□□ -0.25
SYNE1-221ENST00000472563 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.51□□□□□ -0.25
SYNE1-221ENST00000472563 KIAA0319LQ8IZA0 1049 aa13.51□□□□□ -0.25
SYNE1-221ENST00000472563 ETNPPLQ8TBG4 499 aa13.51□□□□□ -0.25
SYNE1-221ENST00000472563 OXER1Q8TDS5 423 aa13.51□□□□□ -0.25
SYNE1-221ENST00000472563 NAP1L4Q99733 375 aaKnown RBP13.51□□□□□ -0.25
SYNE1-221ENST00000472563 CELF4Q9BZC1 486 aaKnown RBP13.51□□□□□ -0.25
SYNE1-221ENST00000472563 UNC45AQ9H3U1 944 aa13.51□□□□□ -0.25
SYNE1-221ENST00000472563 DDX25Q9UHL0 483 aaKnown RBP13.51□□□□□ -0.25
SYNE1-221ENST00000472563 CEP131Q9UPN4 1083 aa13.51□□□□□ -0.25
SYNE1-221ENST00000472563 LIMCH1Q9UPQ0 1083 aa13.51□□□□□ -0.25
SYNE1-221ENST00000472563 TRPV2Q9Y5S1 764 aa13.51□□□□□ -0.25
SYNE1-221ENST00000472563 CDH23Q9H251 3354 aa13.51□□□□□ -0.25
SYNE1-221ENST00000472563 ZNF862O60290 1169 aa13.5□□□□□ -0.25
SYNE1-221ENST00000472563 C22orf31O95567 290 aa13.5□□□□□ -0.25
SYNE1-221ENST00000472563 IGFBP4P22692 258 aa13.5□□□□□ -0.25
SYNE1-221ENST00000472563 LETM2Q2VYF4 491 aa13.5□□□□□ -0.25
SYNE1-221ENST00000472563 FAM117BQ6P1L5 589 aa13.5□□□□□ -0.25
SYNE1-221ENST00000472563 GJA10Q969M2 543 aa13.5□□□□□ -0.25
SYNE1-221ENST00000472563 FAM20AQ96MK3 541 aa13.5□□□□□ -0.25
SYNE1-221ENST00000472563 AGO3Q9H9G7 860 aaKnown RBP13.5□□□□□ -0.25
SYNE1-221ENST00000472563 CERS4Q9HA82 394 aa13.5□□□□□ -0.25
SYNE1-221ENST00000472563 BRMS1Q9HCU9 246 aa13.5□□□□□ -0.25
SYNE1-221ENST00000472563 NRBP2Q9NSY0 501 aa13.5□□□□□ -0.25
SYNE1-221ENST00000472563 TANC1Q9C0D5 1861 aa13.49□□□□□ -0.25
SYNE1-221ENST00000472563 LINC01553A4QN01 128 aa13.49□□□□□ -0.25
SYNE1-221ENST00000472563 EPOPA6NHQ4 379 aa13.49□□□□□ -0.25
SYNE1-221ENST00000472563 ENPP3O14638 875 aa13.49□□□□□ -0.25
SYNE1-221ENST00000472563 MAGEB2O15479 319 aa13.49□□□□□ -0.25
SYNE1-221ENST00000472563 CHMP2AO43633 222 aa13.49□□□□□ -0.25
SYNE1-221ENST00000472563 JAK2O60674 1132 aa13.49□□□□□ -0.25
SYNE1-221ENST00000472563 OATP04181 439 aa13.49□□□□□ -0.25
SYNE1-221ENST00000472563 CD52P31358 61 aa13.49□□□□□ -0.25
SYNE1-221ENST00000472563 KRT2P35908 639 aa13.49□□□□□ -0.25
SYNE1-221ENST00000472563 ERVK-21P61565 698 aa13.49□□□□□ -0.25
SYNE1-221ENST00000472563 TMEM62Q0P6H9 643 aa13.49□□□□□ -0.25
SYNE1-221ENST00000472563 PIK3AP1Q6ZUJ8 805 aa13.49□□□□□ -0.25
SYNE1-221ENST00000472563 MIER3Q7Z3K6 550 aa13.49□□□□□ -0.25
SYNE1-221ENST00000472563 SP7Q8TDD2 431 aaPredicted RBP13.49□□□□□ -0.25
SYNE1-221ENST00000472563 ARNTL2Q8WYA1 636 aa13.49□□□□□ -0.25
SYNE1-221ENST00000472563 TNFRSF25Q93038 417 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms