RNA–Protein interactions for RNA: ENST00000469585.5

PTCD3-208, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-208ENST00000469585 IL16Q14005 1332 aa7.86□□□□□ -1.15
PTCD3-208ENST00000469585 USP42Q9H9J4 1324 aaKnown RBP7.86□□□□□ -1.15
PTCD3-208ENST00000469585 SCO2A0A1W2PP80 73 aa7.86□□□□□ -1.15
PTCD3-208ENST00000469585 RNASE1P07998 156 aaKnown RBP7.86□□□□□ -1.15
PTCD3-208ENST00000469585 MMP10P09238 476 aa7.86□□□□□ -1.15
PTCD3-208ENST00000469585 PLS3P13797 630 aa7.86□□□□□ -1.15
PTCD3-208ENST00000469585 MYL6BP14649 208 aa7.86□□□□□ -1.15
PTCD3-208ENST00000469585 DUSP4Q13115 394 aa7.86□□□□□ -1.15
PTCD3-208ENST00000469585 TESK1Q15569 626 aa7.86□□□□□ -1.15
PTCD3-208ENST00000469585 NTRK3Q16288 839 aa7.86□□□□□ -1.15
PTCD3-208ENST00000469585 GPR162Q16538 588 aa7.86□□□□□ -1.15
PTCD3-208ENST00000469585 HSP90AB3PQ58FF7 597 aa7.86□□□□□ -1.15
PTCD3-208ENST00000469585 ACBD5Q5T8D3 534 aaPredicted RBP7.86□□□□□ -1.15
PTCD3-208ENST00000469585 CCDC30Q5VVM6 783 aa7.86□□□□□ -1.15
PTCD3-208ENST00000469585 CYP2R1Q6VVX0 501 aa7.86□□□□□ -1.15
PTCD3-208ENST00000469585 HOMER1Q86YM7 354 aa7.86□□□□□ -1.15
PTCD3-208ENST00000469585 HHIPL1Q96JK4 782 aa7.86□□□□□ -1.15
PTCD3-208ENST00000469585 NYXQ9GZU5 481 aa7.86□□□□□ -1.15
PTCD3-208ENST00000469585 CLEC1BQ9P126 229 aa7.86□□□□□ -1.15
PTCD3-208ENST00000469585 DBF4Q9UBU7 674 aaPredicted RBP7.86□□□□□ -1.15
PTCD3-208ENST00000469585 NARFQ9UHQ1 456 aa7.86□□□□□ -1.15
PTCD3-208ENST00000469585 TMEFF2Q9UIK5 374 aaPredicted RBP7.86□□□□□ -1.15
PTCD3-208ENST00000469585 ZBTB1Q9Y2K1 713 aa7.86□□□□□ -1.15
PTCD3-208ENST00000469585 KCPQ6ZWJ8 1503 aa7.86□□□□□ -1.15
PTCD3-208ENST00000469585 FADS2P1A8MWK0 482 aa7.85□□□□□ -1.15
PTCD3-208ENST00000469585 CHL1O00533 1208 aa7.85□□□□□ -1.15
PTCD3-208ENST00000469585 A1BGP04217 495 aa7.85□□□□□ -1.15
PTCD3-208ENST00000469585 C6orf222P0C671 652 aaPredicted RBP7.85□□□□□ -1.15
PTCD3-208ENST00000469585 PAMP19021 973 aa7.85□□□□□ -1.15
PTCD3-208ENST00000469585 SUMO1P63165 101 aaKnown RBP7.85□□□□□ -1.15
PTCD3-208ENST00000469585 CLEC4GQ6UXB4 293 aa7.85□□□□□ -1.15
PTCD3-208ENST00000469585 CCDC103Q8IW40 242 aa7.85□□□□□ -1.15
PTCD3-208ENST00000469585 NAT16Q8N8M0 369 aa7.85□□□□□ -1.15
PTCD3-208ENST00000469585 IPO9Q96P70 1041 aaKnown RBP7.85□□□□□ -1.15
PTCD3-208ENST00000469585 MMP19Q99542 508 aa7.85□□□□□ -1.15
PTCD3-208ENST00000469585 ZFP64Q9NPA5 681 aa7.85□□□□□ -1.15
PTCD3-208ENST00000469585 HYPKQ9NX55 129 aa7.85□□□□□ -1.15
PTCD3-208ENST00000469585 TNFRSF10DQ9UBN6 386 aa7.85□□□□□ -1.15
PTCD3-208ENST00000469585 CD2APQ9Y5K6 639 aa7.85□□□□□ -1.15
PTCD3-208ENST00000469585 CICQ96RK0 1608 aaPredicted RBP7.85□□□□□ -1.15
PTCD3-208ENST00000469585 CARMIL3Q8ND23 1372 aa7.84□□□□□ -1.15
PTCD3-208ENST00000469585 SIPA1L3O60292 1781 aaPredicted RBP7.84□□□□□ -1.15
PTCD3-208ENST00000469585 UBR2Q8IWV8 1755 aa7.84□□□□□ -1.15
PTCD3-208ENST00000469585 COL5A3P25940 1745 aaPredicted RBP7.84□□□□□ -1.15
PTCD3-208ENST00000469585 UBR3Q6ZT12 1888 aa7.84□□□□□ -1.15
PTCD3-208ENST00000469585 KCNQ3O43525 872 aa7.84□□□□□ -1.15
PTCD3-208ENST00000469585 CDC45O75419 566 aa7.84□□□□□ -1.15
PTCD3-208ENST00000469585 HSD3B2P26439 372 aa7.84□□□□□ -1.15
PTCD3-208ENST00000469585 KIR2DL1P43626 348 aaPredicted RBP7.84□□□□□ -1.15
PTCD3-208ENST00000469585 KIR2DL2P43627 348 aaPredicted RBP7.84□□□□□ -1.15
PTCD3-208ENST00000469585 HK2P52789 917 aa7.84□□□□□ -1.15
PTCD3-208ENST00000469585 GP2P55259 537 aaKnown RBP7.84□□□□□ -1.15
PTCD3-208ENST00000469585 NEXNQ0ZGT2 675 aa7.84□□□□□ -1.15
PTCD3-208ENST00000469585 ZNF792Q3KQV3 632 aa7.84□□□□□ -1.15
PTCD3-208ENST00000469585 PLEKHG4Q58EX7 1191 aa7.84□□□□□ -1.15
PTCD3-208ENST00000469585 E4F1Q66K89 784 aaPredicted RBP7.84□□□□□ -1.15
PTCD3-208ENST00000469585 C16orf86Q6ZW13 317 aa7.84□□□□□ -1.15
PTCD3-208ENST00000469585 PPP1R42Q7Z4L9 355 aa7.84□□□□□ -1.15
PTCD3-208ENST00000469585 NBPF5PQ86XG9 351 aaPredicted RBP7.84□□□□□ -1.15
PTCD3-208ENST00000469585 PPIL6Q8IXY8 311 aa7.84□□□□□ -1.15
PTCD3-208ENST00000469585 ABI1Q8IZP0 508 aa7.84□□□□□ -1.15
PTCD3-208ENST00000469585 CNBD1Q8NA66 436 aa7.84□□□□□ -1.15
PTCD3-208ENST00000469585 CCDC120Q96HB5 630 aa7.84□□□□□ -1.15
PTCD3-208ENST00000469585 SP110Q9HB58 689 aa7.84□□□□□ -1.15
PTCD3-208ENST00000469585 USP16Q9Y5T5 823 aa7.84□□□□□ -1.15
PTCD3-208ENST00000469585 NPFFR2Q9Y5X5 522 aa7.84□□□□□ -1.15
PTCD3-208ENST00000469585 CASZ1Q86V15 1759 aa7.84□□□□□ -1.15
PTCD3-208ENST00000469585 TRBV23OR9-2A0A075B6M9 112 aa7.83□□□□□ -1.16
PTCD3-208ENST00000469585 NPHP3-ACAD11A0A0J9YXS1 232 aa7.83□□□□□ -1.16
PTCD3-208ENST00000469585 BLACEA4D250 179 aa7.83□□□□□ -1.16
PTCD3-208ENST00000469585 ERVV-1B6SEH8 477 aa7.83□□□□□ -1.16
PTCD3-208ENST00000469585 TBC1D8O95759 1140 aa7.83□□□□□ -1.16
PTCD3-208ENST00000469585 GYS1P13807 737 aa7.83□□□□□ -1.16
PTCD3-208ENST00000469585 PDE6BP35913 854 aa7.83□□□□□ -1.16
PTCD3-208ENST00000469585 GDNFP39905 211 aa7.83□□□□□ -1.16
PTCD3-208ENST00000469585 EIF5P55010 431 aaKnown RBP7.83□□□□□ -1.16
PTCD3-208ENST00000469585 AIMP1Q12904 312 aaKnown RBP7.83□□□□□ -1.16
PTCD3-208ENST00000469585 HLA-DQA1Q5Y7H0 255 aa7.83□□□□□ -1.16
PTCD3-208ENST00000469585 MBLAC2Q68D91 279 aa7.83□□□□□ -1.16
PTCD3-208ENST00000469585 KIAA0907Q7Z7F0 614 aaPredicted RBP7.83□□□□□ -1.16
PTCD3-208ENST00000469585 SLCO6A1Q86UG4 719 aa7.83□□□□□ -1.16
PTCD3-208ENST00000469585 CPNE8Q86YQ8 564 aa7.83□□□□□ -1.16
PTCD3-208ENST00000469585 SYNPOQ8N3V7 929 aa7.83□□□□□ -1.16
PTCD3-208ENST00000469585 ANKS4BQ8N8V4 417 aa7.83□□□□□ -1.16
PTCD3-208ENST00000469585 PDZD8Q8NEN9 1154 aa7.83□□□□□ -1.16
PTCD3-208ENST00000469585 NCOA5Q9HCD5 579 aaKnown RBP7.83□□□□□ -1.16
PTCD3-208ENST00000469585 DDX21Q9NR30 783 aaKnown RBP eCLIP7.83□□□□□ -1.16
PTCD3-208ENST00000469585 NIP7Q9Y221 180 aaKnown RBP eCLIP7.83□□□□□ -1.16
PTCD3-208ENST00000469585 TJP1Q07157 1748 aa7.83□□□□□ -1.16
PTCD3-208ENST00000469585 LAMB4A4D0S4 1761 aa7.82□□□□□ -1.16
PTCD3-208ENST00000469585 NOTOA8MTQ0 251 aa7.82□□□□□ -1.16
PTCD3-208ENST00000469585 H0YIN7 160 aa7.82□□□□□ -1.16
PTCD3-208ENST00000469585 ELL2O00472 640 aaPredicted RBP7.82□□□□□ -1.16
PTCD3-208ENST00000469585 PPP1R12AO14974 1030 aaPredicted RBP7.82□□□□□ -1.16
PTCD3-208ENST00000469585 MEFVO15553 781 aaPredicted RBP7.82□□□□□ -1.16
PTCD3-208ENST00000469585 USP2O75604 605 aaPredicted RBP7.82□□□□□ -1.16
PTCD3-208ENST00000469585 ASMTLO95671 621 aa7.82□□□□□ -1.16
PTCD3-208ENST00000469585 TGFB2P61812 414 aa7.82□□□□□ -1.16
PTCD3-208ENST00000469585 INF2Q27J81 1249 aa7.82□□□□□ -1.16
PTCD3-208ENST00000469585 TWISTNBQ3B726 338 aaPredicted RBP7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms