RNA–Protein interactions for RNA: ENST00000462700.5

COL9A3-203, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 1,237 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-203ENST00000462700 MCM2P49736 904 aa21.27■■□□□ 1
COL9A3-203ENST00000462700 SAFBQ15424 915 aaKnown RBP eCLIP21.27■■□□□ 1
COL9A3-203ENST00000462700 CNKSR3Q6P9H4 555 aa21.27■■□□□ 1
COL9A3-203ENST00000462700 Q7L0L9 218 aa21.27■■□□□ 1
COL9A3-203ENST00000462700 CKAP2LQ8IYA6 745 aa21.27■■□□□ 1
COL9A3-203ENST00000462700 TRAPPC12Q8WVT3 735 aa21.27■■□□□ 1
COL9A3-203ENST00000462700 ZBTB10Q96DT7 871 aa21.27■■□□□ 1
COL9A3-203ENST00000462700 SLC4A7Q9Y6M7 1214 aa21.27■■□□□ 1
COL9A3-203ENST00000462700 GRXCR1A8MXD5 290 aa21.26■□□□□ 0.99
COL9A3-203ENST00000462700 BAIAP3O94812 1187 aa21.26■□□□□ 0.99
COL9A3-203ENST00000462700 FAM26DQ5JW98 314 aa21.26■□□□□ 0.99
COL9A3-203ENST00000462700 DEFB123Q8N688 67 aa21.26■□□□□ 0.99
COL9A3-203ENST00000462700 FBXO18Q8NFZ0 1043 aa21.26■□□□□ 0.99
COL9A3-203ENST00000462700 RDM1Q8NG50 284 aa21.26■□□□□ 0.99
COL9A3-203ENST00000462700 FAM20AQ96MK3 541 aa21.26■□□□□ 0.99
COL9A3-203ENST00000462700 TRIP12Q14669 1992 aaPredicted RBP21.26■□□□□ 0.99
COL9A3-203ENST00000462700 COL1A2P08123 1366 aa21.25■□□□□ 0.99
COL9A3-203ENST00000462700 RBAK-RBAKDNI3L0D1 243 aa21.25■□□□□ 0.99
COL9A3-203ENST00000462700 TBX3O15119 743 aa21.25■□□□□ 0.99
COL9A3-203ENST00000462700 TCTN1Q2MV58 587 aa21.25■□□□□ 0.99
COL9A3-203ENST00000462700 MIER3Q7Z3K6 550 aa21.25■□□□□ 0.99
COL9A3-203ENST00000462700 RSPH3Q86UC2 560 aa21.25■□□□□ 0.99
COL9A3-203ENST00000462700 DNAJB3Q8WWF6 145 aa21.25■□□□□ 0.99
COL9A3-203ENST00000462700 BBXQ8WY36 941 aaPredicted RBP21.25■□□□□ 0.99
COL9A3-203ENST00000462700 PCDHA2Q9Y5H9 948 aa21.25■□□□□ 0.99
COL9A3-203ENST00000462700 RPLP2P05387 115 aaKnown RBP21.24■□□□□ 0.99
COL9A3-203ENST00000462700 DNAJB2P25686 324 aa21.24■□□□□ 0.99
COL9A3-203ENST00000462700 MGAT3Q09327 533 aa21.24■□□□□ 0.99
COL9A3-203ENST00000462700 UGCGQ16739 394 aa21.24■□□□□ 0.99
COL9A3-203ENST00000462700 ZNF484Q5JVG2 852 aa21.24■□□□□ 0.99
COL9A3-203ENST00000462700 ZNF697Q5TEC3 545 aa21.24■□□□□ 0.99
COL9A3-203ENST00000462700 MTHFD1LQ6UB35 978 aa21.24■□□□□ 0.99
COL9A3-203ENST00000462700 HAS1Q92839 578 aa21.24■□□□□ 0.99
COL9A3-203ENST00000462700 FAM167AQ96KS9 214 aa21.24■□□□□ 0.99
COL9A3-203ENST00000462700 PBX4Q9BYU1 374 aa21.24■□□□□ 0.99
COL9A3-203ENST00000462700 VAV3Q9UKW4 847 aa21.24■□□□□ 0.99
COL9A3-203ENST00000462700 ZBTB42B2RXF5 422 aa21.23■□□□□ 0.99
COL9A3-203ENST00000462700 WNT7AO00755 349 aa21.23■□□□□ 0.99
COL9A3-203ENST00000462700 ZNF862O60290 1169 aa21.23■□□□□ 0.99
COL9A3-203ENST00000462700 CHRNA1P02708 482 aa21.23■□□□□ 0.99
COL9A3-203ENST00000462700 OATP04181 439 aa21.23■□□□□ 0.99
COL9A3-203ENST00000462700 ATP2A2P16615 1042 aaKnown RBP21.23■□□□□ 0.99
COL9A3-203ENST00000462700 KLRC1P26715 233 aa21.23■□□□□ 0.99
COL9A3-203ENST00000462700 PBX2P40425 430 aa21.23■□□□□ 0.99
COL9A3-203ENST00000462700 PPP2R5CQ13362 524 aa21.23■□□□□ 0.99
COL9A3-203ENST00000462700 PLEKHG4Q58EX7 1191 aa21.23■□□□□ 0.99
COL9A3-203ENST00000462700 TRMT1LQ7Z2T5 733 aaKnown RBP21.23■□□□□ 0.99
COL9A3-203ENST00000462700 SLC9A7Q96T83 725 aa21.23■□□□□ 0.99
COL9A3-203ENST00000462700 OSBPL7Q9BZF2 842 aa21.23■□□□□ 0.99
COL9A3-203ENST00000462700 FAM49AQ9H0Q0 323 aaPredicted RBP21.23■□□□□ 0.99
COL9A3-203ENST00000462700 FOXP1Q9H334 677 aaPredicted RBP21.23■□□□□ 0.99
COL9A3-203ENST00000462700 TMEM265A0A087WTH1 108 aa21.22■□□□□ 0.99
COL9A3-203ENST00000462700 SMIM35A0A1B0GVV1 85 aa21.22■□□□□ 0.99
COL9A3-203ENST00000462700 ABHD14A-ACY1A0A1B0GW23 586 aa21.22■□□□□ 0.99
COL9A3-203ENST00000462700 MARCH6O60337 910 aa21.22■□□□□ 0.99
COL9A3-203ENST00000462700 WDR5P61964 334 aaKnown RBP21.22■□□□□ 0.99
COL9A3-203ENST00000462700 PRKCEQ02156 737 aa21.22■□□□□ 0.99
COL9A3-203ENST00000462700 DBF4BQ8NFT6 615 aa21.22■□□□□ 0.99
COL9A3-203ENST00000462700 MTMR10Q9NXD2 777 aa21.22■□□□□ 0.99
COL9A3-203ENST00000462700 CEP131Q9UPN4 1083 aa21.22■□□□□ 0.99
COL9A3-203ENST00000462700 BAG4O95429 457 aaKnown RBP21.21■□□□□ 0.99
COL9A3-203ENST00000462700 KCNJ6P48051 423 aa21.21■□□□□ 0.99
COL9A3-203ENST00000462700 MRPS6P82932 125 aaKnown RBP21.21■□□□□ 0.99
COL9A3-203ENST00000462700 IKBKEQ14164 716 aa21.21■□□□□ 0.99
COL9A3-203ENST00000462700 RAB30Q15771 203 aa21.21■□□□□ 0.99
COL9A3-203ENST00000462700 SLFN12Q8IYM2 578 aa21.21■□□□□ 0.99
COL9A3-203ENST00000462700 PHOSPHO2Q8TCD6 241 aa21.21■□□□□ 0.99
COL9A3-203ENST00000462700 TIFAQ96CG3 184 aa21.21■□□□□ 0.99
COL9A3-203ENST00000462700 TTYH1Q9H313 450 aaPredicted RBP21.21■□□□□ 0.99
COL9A3-203ENST00000462700 NRBP2Q9NSY0 501 aa21.21■□□□□ 0.99
COL9A3-203ENST00000462700 KIF3AQ9Y496 699 aa21.21■□□□□ 0.99
COL9A3-203ENST00000462700 CDY2AQ9Y6F7 541 aa21.21■□□□□ 0.99
COL9A3-203ENST00000462700 EML1O00423 815 aa21.2■□□□□ 0.98
COL9A3-203ENST00000462700 NEMFO60524 1076 aa21.2■□□□□ 0.98
COL9A3-203ENST00000462700 EFCAB14O75071 495 aa21.2■□□□□ 0.98
COL9A3-203ENST00000462700 C22orf31O95567 290 aa21.2■□□□□ 0.98
COL9A3-203ENST00000462700 RABGGTBP53611 331 aa21.2■□□□□ 0.98
COL9A3-203ENST00000462700 CALCRLQ16602 461 aa21.2■□□□□ 0.98
COL9A3-203ENST00000462700 IER5Q5VY09 327 aa21.2■□□□□ 0.98
COL9A3-203ENST00000462700 SEPT8Q92599 483 aa21.2■□□□□ 0.98
COL9A3-203ENST00000462700 FAM161BQ96MY7 647 aa21.2■□□□□ 0.98
COL9A3-203ENST00000462700 SEMA6BQ9H3T3 888 aa21.2■□□□□ 0.98
COL9A3-203ENST00000462700 MSRAQ9UJ68 235 aa21.2■□□□□ 0.98
COL9A3-203ENST00000462700 TET1Q8NFU7 2136 aa21.19■□□□□ 0.98
COL9A3-203ENST00000462700 KIF28PB7ZC32 967 aa21.19■□□□□ 0.98
COL9A3-203ENST00000462700 GHRP10912 638 aa21.19■□□□□ 0.98
COL9A3-203ENST00000462700 GJB2P29033 226 aa21.19■□□□□ 0.98
COL9A3-203ENST00000462700 SPIRE1Q08AE8 756 aa21.19■□□□□ 0.98
COL9A3-203ENST00000462700 MKRN4PQ13434 485 aaPredicted RBP21.19■□□□□ 0.98
COL9A3-203ENST00000462700 GNL2Q13823 731 aaKnown RBP21.19■□□□□ 0.98
COL9A3-203ENST00000462700 NOSTRINQ8IVI9 506 aa21.19■□□□□ 0.98
COL9A3-203ENST00000462700 NME8Q8N427 588 aa21.19■□□□□ 0.98
COL9A3-203ENST00000462700 BANK1Q8NDB2 785 aa21.19■□□□□ 0.98
COL9A3-203ENST00000462700 IFIH1Q9BYX4 1025 aaKnown RBP21.19■□□□□ 0.98
COL9A3-203ENST00000462700 YBX2Q9Y2T7 364 aaKnown RBP21.19■□□□□ 0.98
COL9A3-203ENST00000462700 TRPV2Q9Y5S1 764 aa21.19■□□□□ 0.98
COL9A3-203ENST00000462700 M0QZ92 97 aa21.18■□□□□ 0.98
COL9A3-203ENST00000462700 ATP2B1P20020 1258 aa21.18■□□□□ 0.98
COL9A3-203ENST00000462700 PSMC5P62195 406 aa21.18■□□□□ 0.98
COL9A3-203ENST00000462700 DEFB103AP81534 67 aa21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms