RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 TDP2O95551 362 aa8.69□□□□□ -1.02
USP4-207ENST00000462673 CAVIN2O95810 425 aa8.69□□□□□ -1.02
USP4-207ENST00000462673 F2P00734 622 aa8.69□□□□□ -1.02
USP4-207ENST00000462673 LGALS2P05162 132 aa8.69□□□□□ -1.02
USP4-207ENST00000462673 P4HBP07237 508 aaKnown RBP8.69□□□□□ -1.02
USP4-207ENST00000462673 OR52Z1P0C646 297 aa8.69□□□□□ -1.02
USP4-207ENST00000462673 MUTP22033 750 aa8.69□□□□□ -1.02
USP4-207ENST00000462673 TMOD1P28289 359 aa8.69□□□□□ -1.02
USP4-207ENST00000462673 PSEN2P49810 448 aa8.69□□□□□ -1.02
USP4-207ENST00000462673 ATN1P54259 1190 aaPredicted RBP8.69□□□□□ -1.02
USP4-207ENST00000462673 PSMC5P62195 406 aa8.69□□□□□ -1.02
USP4-207ENST00000462673 PLCB2Q00722 1185 aa8.69□□□□□ -1.02
USP4-207ENST00000462673 SEMA3FQ13275 785 aa8.69□□□□□ -1.02
USP4-207ENST00000462673 PPP2R5CQ13362 524 aa8.69□□□□□ -1.02
USP4-207ENST00000462673 BFSP2Q13515 415 aa8.69□□□□□ -1.02
USP4-207ENST00000462673 MFSD10Q14728 455 aa8.69□□□□□ -1.02
USP4-207ENST00000462673 EPHA7Q15375 998 aa8.69□□□□□ -1.02
USP4-207ENST00000462673 KIAA0753Q2KHM9 967 aa8.69□□□□□ -1.02
USP4-207ENST00000462673 FOXD4L6Q3SYB3 417 aaPredicted RBP8.69□□□□□ -1.02
USP4-207ENST00000462673 HAUS3Q68CZ6 603 aa8.69□□□□□ -1.02
USP4-207ENST00000462673 SWSAP1Q6NVH7 229 aa8.69□□□□□ -1.02
USP4-207ENST00000462673 PDXDC2PQ6P474 469 aa8.69□□□□□ -1.02
USP4-207ENST00000462673 ABHD15Q6UXT9 468 aa8.69□□□□□ -1.02
USP4-207ENST00000462673 FOXD4L3Q6VB84 417 aaPredicted RBP8.69□□□□□ -1.02
USP4-207ENST00000462673 ZNF771Q7L3S4 317 aaPredicted RBP8.69□□□□□ -1.02
USP4-207ENST00000462673 UBE2Q1Q7Z7E8 422 aa8.69□□□□□ -1.02
USP4-207ENST00000462673 SESTD1Q86VW0 696 aa8.69□□□□□ -1.02
USP4-207ENST00000462673 RETREG2Q8NC44 543 aa8.69□□□□□ -1.02
USP4-207ENST00000462673 ETNPPLQ8TBG4 499 aa8.69□□□□□ -1.02
USP4-207ENST00000462673 AFAP1L1Q8TED9 768 aa8.69□□□□□ -1.02
USP4-207ENST00000462673 BBXQ8WY36 941 aaPredicted RBP8.69□□□□□ -1.02
USP4-207ENST00000462673 SHISA4Q96DD7 197 aa8.69□□□□□ -1.02
USP4-207ENST00000462673 JPH2Q9BR39 696 aaPredicted RBP8.69□□□□□ -1.02
USP4-207ENST00000462673 C16orf70Q9BSU1 422 aa8.69□□□□□ -1.02
USP4-207ENST00000462673 KCNMB3Q9NPA1 279 aa8.69□□□□□ -1.02
USP4-207ENST00000462673 ATP11BQ9Y2G3 1177 aa8.69□□□□□ -1.02
USP4-207ENST00000462673 PPME1Q9Y570 386 aa8.69□□□□□ -1.02
USP4-207ENST00000462673 PAXBP1Q9Y5B6 917 aa8.69□□□□□ -1.02
USP4-207ENST00000462673 KIAA1217Q5T5P2 1943 aa8.69□□□□□ -1.02
USP4-207ENST00000462673 EMSYQ7Z589 1322 aa8.69□□□□□ -1.02
USP4-207ENST00000462673 IGKV6D-21A0A0A0MT36 114 aa8.68□□□□□ -1.02
USP4-207ENST00000462673 GSTTP1A0A1W2PQM5 241 aa8.68□□□□□ -1.02
USP4-207ENST00000462673 POTEB3A0JP26 581 aa8.68□□□□□ -1.02
USP4-207ENST00000462673 C17orf102A2RUQ5 167 aa8.68□□□□□ -1.02
USP4-207ENST00000462673 MAGEB2O15479 319 aa8.68□□□□□ -1.02
USP4-207ENST00000462673 SLC26A4O43511 780 aa8.68□□□□□ -1.02
USP4-207ENST00000462673 SORBS3O60504 671 aa8.68□□□□□ -1.02
USP4-207ENST00000462673 DTNBO60941 627 aa8.68□□□□□ -1.02
USP4-207ENST00000462673 LGR5O75473 907 aa8.68□□□□□ -1.02
USP4-207ENST00000462673 PTGS1P23219 599 aa8.68□□□□□ -1.02
USP4-207ENST00000462673 TECP42680 631 aa8.68□□□□□ -1.02
USP4-207ENST00000462673 QARSP47897 775 aaKnown RBP8.68□□□□□ -1.02
USP4-207ENST00000462673 DNM2P50570 870 aa8.68□□□□□ -1.02
USP4-207ENST00000462673 CDK7P50613 346 aa8.68□□□□□ -1.02
USP4-207ENST00000462673 TYRO3Q06418 890 aa8.68□□□□□ -1.02
USP4-207ENST00000462673 PTGDRQ13258 359 aa8.68□□□□□ -1.02
USP4-207ENST00000462673 ITGB3BPQ13352 177 aaPredicted RBP8.68□□□□□ -1.02
USP4-207ENST00000462673 SNX17Q15036 470 aa8.68□□□□□ -1.02
USP4-207ENST00000462673 SF3A1Q15459 793 aaKnown RBP8.68□□□□□ -1.02
USP4-207ENST00000462673 PTGISQ16647 500 aa8.68□□□□□ -1.02
USP4-207ENST00000462673 NBPF20Q3BBV1 942 aa8.68□□□□□ -1.02
USP4-207ENST00000462673 ZNF484Q5JVG2 852 aa8.68□□□□□ -1.02
USP4-207ENST00000462673 KRT79Q5XKE5 535 aa8.68□□□□□ -1.02
USP4-207ENST00000462673 POTEBQ6S5H4 581 aa8.68□□□□□ -1.02
USP4-207ENST00000462673 SLC43A3Q8NBI5 491 aa8.68□□□□□ -1.02
USP4-207ENST00000462673 CCDC112Q8NEF3 446 aa8.68□□□□□ -1.02
USP4-207ENST00000462673 ZNF397Q8NF99 534 aaPredicted RBP8.68□□□□□ -1.02
USP4-207ENST00000462673 TSC1Q92574 1164 aa8.68□□□□□ -1.02
USP4-207ENST00000462673 LENG9Q96B70 501 aa8.68□□□□□ -1.02
USP4-207ENST00000462673 LENG1Q96BZ8 264 aaPredicted RBP8.68□□□□□ -1.02
USP4-207ENST00000462673 AK8Q96MA6 479 aa8.68□□□□□ -1.02
USP4-207ENST00000462673 CCDC43Q96MW1 224 aaKnown RBP8.68□□□□□ -1.02
USP4-207ENST00000462673 MTMR9Q96QG7 549 aa8.68□□□□□ -1.02
USP4-207ENST00000462673 LBHD1Q9BQE6 289 aaPredicted RBP8.68□□□□□ -1.02
USP4-207ENST00000462673 ZSWIM4Q9H7M6 989 aa8.68□□□□□ -1.02
USP4-207ENST00000462673 TMEM39AQ9NV64 488 aa8.68□□□□□ -1.02
USP4-207ENST00000462673 KCNG1Q9UIX4 513 aa8.68□□□□□ -1.02
USP4-207ENST00000462673 TRPC6Q9Y210 931 aa8.68□□□□□ -1.02
USP4-207ENST00000462673 MTMR6Q9Y217 621 aa8.68□□□□□ -1.02
USP4-207ENST00000462673 MAFBQ9Y5Q3 323 aaPredicted RBP8.68□□□□□ -1.02
USP4-207ENST00000462673 MYADML2A6NDP7 307 aa8.67□□□□□ -1.02
USP4-207ENST00000462673 M0QZ92 97 aa8.67□□□□□ -1.02
USP4-207ENST00000462673 KIF2AO00139 706 aaPredicted RBP8.67□□□□□ -1.02
USP4-207ENST00000462673 HAS3O00219 553 aa8.67□□□□□ -1.02
USP4-207ENST00000462673 ADAMTS3O15072 1205 aa8.67□□□□□ -1.02
USP4-207ENST00000462673 CHMP2AO43633 222 aa8.67□□□□□ -1.02
USP4-207ENST00000462673 SLC37A4O43826 429 aa8.67□□□□□ -1.02
USP4-207ENST00000462673 PQBP1O60828 265 aaKnown RBP8.67□□□□□ -1.02
USP4-207ENST00000462673 CAND2O75155 1236 aa8.67□□□□□ -1.02
USP4-207ENST00000462673 CLTBP09497 229 aa8.67□□□□□ -1.02
USP4-207ENST00000462673 RAG1P15918 1043 aa8.67□□□□□ -1.02
USP4-207ENST00000462673 TXLNAP40222 546 aa8.67□□□□□ -1.02
USP4-207ENST00000462673 MNX1P50219 401 aaPredicted RBP8.67□□□□□ -1.02
USP4-207ENST00000462673 FXR2P51116 673 aaKnown RBP eCLIP8.67□□□□□ -1.02
USP4-207ENST00000462673 RTP1P59025 263 aa8.67□□□□□ -1.02
USP4-207ENST00000462673 TLE2Q04725 743 aa8.67□□□□□ -1.02
USP4-207ENST00000462673 XKR3Q5GH77 459 aa8.67□□□□□ -1.02
USP4-207ENST00000462673 EARS2Q5JPH6 523 aaKnown RBP8.67□□□□□ -1.02
USP4-207ENST00000462673 TMEM63BQ5T3F8 832 aa8.67□□□□□ -1.02
USP4-207ENST00000462673 NCAPH2Q6IBW4 605 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms