RNA–Protein interactions for RNA: ENST00000450867.1

COL3A1-203, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL3A1, Length 268 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-203ENST00000450867 PARNO95453 639 aaKnown RBP16.16■□□□□ 0.18
COL3A1-203ENST00000450867 RPLP2P05387 115 aaKnown RBP16.16■□□□□ 0.18
COL3A1-203ENST00000450867 RFC2P35250 354 aa16.16■□□□□ 0.18
COL3A1-203ENST00000450867 PPIGQ13427 754 aaKnown RBP eCLIP16.16■□□□□ 0.18
COL3A1-203ENST00000450867 EPHA7Q15375 998 aa16.16■□□□□ 0.18
COL3A1-203ENST00000450867 ZNF484Q5JVG2 852 aa16.16■□□□□ 0.18
COL3A1-203ENST00000450867 MCTP1Q6DN14 999 aa16.16■□□□□ 0.18
COL3A1-203ENST00000450867 TAF2Q6P1X5 1199 aa16.16■□□□□ 0.18
COL3A1-203ENST00000450867 TTC12Q9H892 705 aaPredicted RBP16.16■□□□□ 0.18
COL3A1-203ENST00000450867 TUBE1Q9UJT0 475 aa16.16■□□□□ 0.18
COL3A1-203ENST00000450867 PCDHA12Q9UN75 941 aa16.16■□□□□ 0.18
COL3A1-203ENST00000450867 TRPC6Q9Y210 931 aa16.16■□□□□ 0.18
COL3A1-203ENST00000450867 LAD1O00515 517 aa16.15■□□□□ 0.18
COL3A1-203ENST00000450867 OATP04181 439 aa16.15■□□□□ 0.18
COL3A1-203ENST00000450867 OR52Z1P0C646 297 aa16.15■□□□□ 0.18
COL3A1-203ENST00000450867 IQCF3P0C7M6 154 aa16.15■□□□□ 0.18
COL3A1-203ENST00000450867 CKBP12277 381 aa16.15■□□□□ 0.18
COL3A1-203ENST00000450867 PDIA4P13667 645 aaKnown RBP16.15■□□□□ 0.18
COL3A1-203ENST00000450867 CSF2RAP15509 400 aa16.15■□□□□ 0.18
COL3A1-203ENST00000450867 SELPP16109 830 aa16.15■□□□□ 0.18
COL3A1-203ENST00000450867 EPHB4P54760 987 aa16.15■□□□□ 0.18
COL3A1-203ENST00000450867 PRKCEQ02156 737 aa16.15■□□□□ 0.18
COL3A1-203ENST00000450867 ZNF174Q15697 407 aa16.15■□□□□ 0.18
COL3A1-203ENST00000450867 MICAL3Q7RTP6 2002 aa16.15■□□□□ 0.18
COL3A1-203ENST00000450867 UBE2OQ9C0C9 1292 aaKnown RBP16.15■□□□□ 0.18
COL3A1-203ENST00000450867 IL23AQ9NPF7 189 aa16.15■□□□□ 0.18
COL3A1-203ENST00000450867 PCDHB6Q9Y5E3 794 aa16.15■□□□□ 0.18
COL3A1-203ENST00000450867 LAMA3Q16787 3333 aa16.15■□□□□ 0.18
COL3A1-203ENST00000450867 MARCH6O60337 910 aa16.14■□□□□ 0.17
COL3A1-203ENST00000450867 P4HBP07237 508 aaKnown RBP16.14■□□□□ 0.17
COL3A1-203ENST00000450867 PFKMP08237 780 aa16.14■□□□□ 0.17
COL3A1-203ENST00000450867 ATP2B1P20020 1258 aa16.14■□□□□ 0.17
COL3A1-203ENST00000450867 PRPHP41219 470 aa16.14■□□□□ 0.17
COL3A1-203ENST00000450867 QARSP47897 775 aaKnown RBP16.14■□□□□ 0.17
COL3A1-203ENST00000450867 PSMC5P62195 406 aa16.14■□□□□ 0.17
COL3A1-203ENST00000450867 NBR1Q14596 966 aa16.14■□□□□ 0.17
COL3A1-203ENST00000450867 TARBP2Q15633 366 aaKnown RBP16.14■□□□□ 0.17
COL3A1-203ENST00000450867 XKR3Q5GH77 459 aa16.14■□□□□ 0.17
COL3A1-203ENST00000450867 FAM26DQ5JW98 314 aa16.14■□□□□ 0.17
COL3A1-203ENST00000450867 LRRC8DQ7L1W4 858 aa16.14■□□□□ 0.17
COL3A1-203ENST00000450867 C16orf59Q7L2K0 433 aa16.14■□□□□ 0.17
COL3A1-203ENST00000450867 TDHQ8IZJ6 230 aa16.14■□□□□ 0.17
COL3A1-203ENST00000450867 RETREG2Q8NC44 543 aa16.14■□□□□ 0.17
COL3A1-203ENST00000450867 NEK9Q8TD19 979 aa16.14■□□□□ 0.17
COL3A1-203ENST00000450867 HSD17B14Q9BPX1 270 aa16.14■□□□□ 0.17
COL3A1-203ENST00000450867 NIFKQ9BYG3 293 aaKnown RBP16.14■□□□□ 0.17
COL3A1-203ENST00000450867 CEP131Q9UPN4 1083 aa16.14■□□□□ 0.17
COL3A1-203ENST00000450867 MTMR6Q9Y217 621 aa16.14■□□□□ 0.17
COL3A1-203ENST00000450867 PCDHA2Q9Y5H9 948 aa16.14■□□□□ 0.17
COL3A1-203ENST00000450867 LAMA2P24043 3122 aaKnown RBP16.14■□□□□ 0.17
COL3A1-203ENST00000450867 PTPRSQ13332 1948 aa16.13■□□□□ 0.17
COL3A1-203ENST00000450867 SMIM35A0A1B0GVV1 85 aa16.13■□□□□ 0.17
COL3A1-203ENST00000450867 VPS37CA5D8V6 355 aaPredicted RBP16.13■□□□□ 0.17
COL3A1-203ENST00000450867 DKC1O60832 514 aaKnown RBP eCLIP16.13■□□□□ 0.17
COL3A1-203ENST00000450867 LYPLA2O95372 231 aa16.13■□□□□ 0.17
COL3A1-203ENST00000450867 C22orf31O95567 290 aa16.13■□□□□ 0.17
COL3A1-203ENST00000450867 CXCL10P02778 98 aa16.13■□□□□ 0.17
COL3A1-203ENST00000450867 TXKP42681 527 aa16.13■□□□□ 0.17
COL3A1-203ENST00000450867 FXR2P51116 673 aaKnown RBP eCLIP16.13■□□□□ 0.17
COL3A1-203ENST00000450867 CCL23P55773 120 aa16.13■□□□□ 0.17
COL3A1-203ENST00000450867 PTGDRQ13258 359 aa16.13■□□□□ 0.17
COL3A1-203ENST00000450867 GPNMBQ14956 572 aa16.13■□□□□ 0.17
COL3A1-203ENST00000450867 ZNF618Q5T7W0 954 aa16.13■□□□□ 0.17
COL3A1-203ENST00000450867 RASIP1Q5U651 963 aa16.13■□□□□ 0.17
COL3A1-203ENST00000450867 PSRC1Q6PGN9 363 aaPredicted RBP16.13■□□□□ 0.17
COL3A1-203ENST00000450867 MTHFD1LQ6UB35 978 aa16.13■□□□□ 0.17
COL3A1-203ENST00000450867 RUFY4Q6ZNE9 571 aa16.13■□□□□ 0.17
COL3A1-203ENST00000450867 C4orf19Q8IY42 314 aa16.13■□□□□ 0.17
COL3A1-203ENST00000450867 TRAPPC12Q8WVT3 735 aa16.13■□□□□ 0.17
COL3A1-203ENST00000450867 SCLYQ96I15 445 aa16.13■□□□□ 0.17
COL3A1-203ENST00000450867 CEP89Q96ST8 783 aa16.13■□□□□ 0.17
COL3A1-203ENST00000450867 NRBP2Q9NSY0 501 aa16.13■□□□□ 0.17
COL3A1-203ENST00000450867 STX6O43752 255 aa16.12■□□□□ 0.17
COL3A1-203ENST00000450867 ATP2C1P98194 919 aaPredicted RBP16.12■□□□□ 0.17
COL3A1-203ENST00000450867 RESTQ13127 1097 aa16.12■□□□□ 0.17
COL3A1-203ENST00000450867 MBTPS1Q14703 1052 aa16.12■□□□□ 0.17
COL3A1-203ENST00000450867 TMEM240Q5SV17 173 aa16.12■□□□□ 0.17
COL3A1-203ENST00000450867 NCAPH2Q6IBW4 605 aa16.12■□□□□ 0.17
COL3A1-203ENST00000450867 CKAP2LQ8IYA6 745 aa16.12■□□□□ 0.17
COL3A1-203ENST00000450867 RPUSD2Q8IZ73 545 aaKnown RBP16.12■□□□□ 0.17
COL3A1-203ENST00000450867 LINC01465Q8N7H1 131 aa16.12■□□□□ 0.17
COL3A1-203ENST00000450867 IGSF22Q8N9C0 903 aa16.12■□□□□ 0.17
COL3A1-203ENST00000450867 BANK1Q8NDB2 785 aa16.12■□□□□ 0.17
COL3A1-203ENST00000450867 LXNQ9BS40 222 aa16.12■□□□□ 0.17
COL3A1-203ENST00000450867 WRAP73Q9P2S5 460 aaPredicted RBP16.12■□□□□ 0.17
COL3A1-203ENST00000450867 PPME1Q9Y570 386 aa16.12■□□□□ 0.17
COL3A1-203ENST00000450867 GBF1Q92538 1859 aa16.12■□□□□ 0.17
COL3A1-203ENST00000450867 POTEMA6NI47 508 aa16.11■□□□□ 0.17
COL3A1-203ENST00000450867 MAGEB2O15479 319 aa16.11■□□□□ 0.17
COL3A1-203ENST00000450867 SLITRK3O94933 977 aa16.11■□□□□ 0.17
COL3A1-203ENST00000450867 KLRC1P26715 233 aa16.11■□□□□ 0.17
COL3A1-203ENST00000450867 THPOP40225 353 aa16.11■□□□□ 0.17
COL3A1-203ENST00000450867 IGBP1P78318 339 aa16.11■□□□□ 0.17
COL3A1-203ENST00000450867 MGAT3Q09327 533 aa16.11■□□□□ 0.17
COL3A1-203ENST00000450867 PDIA5Q14554 519 aa16.11■□□□□ 0.17
COL3A1-203ENST00000450867 HABP4Q5JVS0 413 aaKnown RBP16.11■□□□□ 0.17
COL3A1-203ENST00000450867 C9orf50Q5SZB4 431 aa16.11■□□□□ 0.17
COL3A1-203ENST00000450867 ARL6IP4Q66PJ3 421 aaKnown RBP16.11■□□□□ 0.17
COL3A1-203ENST00000450867 ANO5Q75V66 913 aa16.11■□□□□ 0.17
COL3A1-203ENST00000450867 EIF2AK1Q9BQI3 630 aaKnown RBP16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms