RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 SETDB2Q96T68 719 aa20.89■□□□□ 0.93
HMGA1-205ENST00000447654 SYT15Q9BQS2 421 aa20.89■□□□□ 0.93
HMGA1-205ENST00000447654 TRIM7Q9C029 511 aa20.89■□□□□ 0.93
HMGA1-205ENST00000447654 RNPEPL1Q9HAU8 725 aa20.89■□□□□ 0.93
HMGA1-205ENST00000447654 ARHGAP20Q9P2F6 1191 aa20.89■□□□□ 0.93
HMGA1-205ENST00000447654 TMCO1Q9UM00 188 aa20.89■□□□□ 0.93
HMGA1-205ENST00000447654 GMEB1Q9Y692 573 aa20.89■□□□□ 0.93
HMGA1-205ENST00000447654 SSU72P8A0A1W2PR75 194 aa20.88■□□□□ 0.93
HMGA1-205ENST00000447654 RBAK-RBAKDNI3L0D1 243 aa20.88■□□□□ 0.93
HMGA1-205ENST00000447654 AKR1B10O60218 316 aa20.88■□□□□ 0.93
HMGA1-205ENST00000447654 MYL1P05976 194 aa20.88■□□□□ 0.93
HMGA1-205ENST00000447654 CHN1P15882 459 aa20.88■□□□□ 0.93
HMGA1-205ENST00000447654 RCAN1P53805 252 aa20.88■□□□□ 0.93
HMGA1-205ENST00000447654 UBE4AQ14139 1066 aa20.88■□□□□ 0.93
HMGA1-205ENST00000447654 LRRC34Q8IZ02 419 aa20.88■□□□□ 0.93
HMGA1-205ENST00000447654 ZKSCAN3Q9BRR0 538 aa20.88■□□□□ 0.93
HMGA1-205ENST00000447654 ABCF3Q9NUQ8 709 aa20.88■□□□□ 0.93
HMGA1-205ENST00000447654 CTTNBP2NLQ9P2B4 639 aa20.88■□□□□ 0.93
HMGA1-205ENST00000447654 ATXN10Q9UBB4 475 aa20.88■□□□□ 0.93
HMGA1-205ENST00000447654 USP15Q9Y4E8 981 aaPredicted RBP20.88■□□□□ 0.93
HMGA1-205ENST00000447654 CACNA1SQ13698 1873 aa20.88■□□□□ 0.93
HMGA1-205ENST00000447654 F8VZ95 297 aa20.87■□□□□ 0.93
HMGA1-205ENST00000447654 PSMA7O14818 248 aa20.87■□□□□ 0.93
HMGA1-205ENST00000447654 CCNB1P14635 433 aa20.87■□□□□ 0.93
HMGA1-205ENST00000447654 CD151P48509 253 aa20.87■□□□□ 0.93
HMGA1-205ENST00000447654 PARP6Q2NL67 630 aa20.87■□□□□ 0.93
HMGA1-205ENST00000447654 AKNAD1Q5T1N1 836 aa20.87■□□□□ 0.93
HMGA1-205ENST00000447654 ACBD5Q5T8D3 534 aaPredicted RBP20.87■□□□□ 0.93
HMGA1-205ENST00000447654 TMC3Q7Z5M5 1100 aa20.87■□□□□ 0.93
HMGA1-205ENST00000447654 LCA5Q86VQ0 697 aa20.87■□□□□ 0.93
HMGA1-205ENST00000447654 PRCCQ92733 491 aaPredicted RBP20.87■□□□□ 0.93
HMGA1-205ENST00000447654 ELAC2Q9BQ52 826 aaKnown RBP20.87■□□□□ 0.93
HMGA1-205ENST00000447654 PCMTD2Q9NV79 361 aa20.87■□□□□ 0.93
HMGA1-205ENST00000447654 RPL26L1Q9UNX3 145 aaKnown RBP20.87■□□□□ 0.93
HMGA1-205ENST00000447654 SUN1O94901 812 aa20.87■□□□□ 0.93
HMGA1-205ENST00000447654 RXRBP28702 533 aa20.87■□□□□ 0.93
HMGA1-205ENST00000447654 TM4SF1P30408 202 aa20.87■□□□□ 0.93
HMGA1-205ENST00000447654 PDE6BP35913 854 aa20.87■□□□□ 0.93
HMGA1-205ENST00000447654 PLS1Q14651 629 aa20.87■□□□□ 0.93
HMGA1-205ENST00000447654 PABPC1LQ4VXU2 614 aaKnown RBP20.87■□□□□ 0.93
HMGA1-205ENST00000447654 TMEM67Q5HYA8 995 aa20.87■□□□□ 0.93
HMGA1-205ENST00000447654 MEI1Q5TIA1 1274 aa20.87■□□□□ 0.93
HMGA1-205ENST00000447654 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP20.87■□□□□ 0.93
HMGA1-205ENST00000447654 OPTNQ96CV9 577 aa20.87■□□□□ 0.93
HMGA1-205ENST00000447654 FGD4Q96M96 766 aa20.87■□□□□ 0.93
HMGA1-205ENST00000447654 UBAC1Q9BSL1 405 aa20.87■□□□□ 0.93
HMGA1-205ENST00000447654 EDEM3Q9BZQ6 932 aa20.87■□□□□ 0.93
HMGA1-205ENST00000447654 SLC4A7Q9Y6M7 1214 aa20.87■□□□□ 0.93
HMGA1-205ENST00000447654 NHSQ6T4R5 1651 aa20.87■□□□□ 0.93
HMGA1-205ENST00000447654 TPP2P29144 1249 aaPredicted RBP20.86■□□□□ 0.93
HMGA1-205ENST00000447654 EIF4A3P38919 411 aaKnown RBP20.86■□□□□ 0.93
HMGA1-205ENST00000447654 PPP1R2P41236 205 aa20.86■□□□□ 0.93
HMGA1-205ENST00000447654 NLRP5P59047 1200 aa20.86■□□□□ 0.93
HMGA1-205ENST00000447654 RPS8P62241 208 aaKnown RBP20.86■□□□□ 0.93
HMGA1-205ENST00000447654 TMEM154Q6P9G4 183 aa20.86■□□□□ 0.93
HMGA1-205ENST00000447654 ENDOVQ8N8Q3 282 aaKnown RBP20.86■□□□□ 0.93
HMGA1-205ENST00000447654 SEC14L1Q92503 715 aa20.86■□□□□ 0.93
HMGA1-205ENST00000447654 DHTKD1Q96HY7 919 aaPredicted RBP20.86■□□□□ 0.93
HMGA1-205ENST00000447654 VCX3BQ9H321 246 aa20.86■□□□□ 0.93
HMGA1-205ENST00000447654 PIDD1Q9HB75 910 aa20.86■□□□□ 0.93
HMGA1-205ENST00000447654 VCX3AQ9NNX9 186 aa20.86■□□□□ 0.93
HMGA1-205ENST00000447654 CABP5Q9NP86 173 aa20.86■□□□□ 0.93
HMGA1-205ENST00000447654 COL24A1Q17RW2 1714 aa20.86■□□□□ 0.93
HMGA1-205ENST00000447654 COBLO75128 1261 aa20.86■□□□□ 0.93
HMGA1-205ENST00000447654 ZPR1O75312 459 aa20.86■□□□□ 0.93
HMGA1-205ENST00000447654 PEX5P50542 639 aa20.86■□□□□ 0.93
HMGA1-205ENST00000447654 DYNLL1P63167 89 aaKnown RBP20.86■□□□□ 0.93
HMGA1-205ENST00000447654 DBN1Q16643 649 aa20.86■□□□□ 0.93
HMGA1-205ENST00000447654 OR52E8Q6IFG1 317 aa20.86■□□□□ 0.93
HMGA1-205ENST00000447654 TYW1BQ6NUM6 668 aa20.86■□□□□ 0.93
HMGA1-205ENST00000447654 TXNRD3Q86VQ6 643 aa20.86■□□□□ 0.93
HMGA1-205ENST00000447654 SCFD2Q8WU76 684 aa20.86■□□□□ 0.93
HMGA1-205ENST00000447654 MTMR8Q96EF0 704 aa20.86■□□□□ 0.93
HMGA1-205ENST00000447654 TRIM47Q96LD4 638 aa20.86■□□□□ 0.93
HMGA1-205ENST00000447654 RIOK1Q9BRS2 568 aaKnown RBP20.86■□□□□ 0.93
HMGA1-205ENST00000447654 TFCP2L1Q9NZI6 479 aa20.86■□□□□ 0.93
HMGA1-205ENST00000447654 KCNJ14Q9UNX9 436 aa20.86■□□□□ 0.93
HMGA1-205ENST00000447654 SLC12A7Q9Y666 1083 aa20.86■□□□□ 0.93
HMGA1-205ENST00000447654 TIAM2Q8IVF5 1701 aa20.85■□□□□ 0.93
HMGA1-205ENST00000447654 CCDC188H7C350 402 aa20.85■□□□□ 0.93
HMGA1-205ENST00000447654 NUDT17P0C025 328 aa20.85■□□□□ 0.93
HMGA1-205ENST00000447654 EVX2Q03828 476 aa20.85■□□□□ 0.93
HMGA1-205ENST00000447654 DIXDC1Q155Q3 683 aa20.85■□□□□ 0.93
HMGA1-205ENST00000447654 ZNF772Q68DY9 489 aaPredicted RBP20.85■□□□□ 0.93
HMGA1-205ENST00000447654 TRIM68Q6AZZ1 485 aa20.85■□□□□ 0.93
HMGA1-205ENST00000447654 CCDC28BQ9BUN5 200 aa20.85■□□□□ 0.93
HMGA1-205ENST00000447654 RXFP1Q9HBX9 757 aa20.85■□□□□ 0.93
HMGA1-205ENST00000447654 ARHGEF10LQ9HCE6 1279 aa20.85■□□□□ 0.93
HMGA1-205ENST00000447654 FAM114A2Q9NRY5 505 aa20.85■□□□□ 0.93
HMGA1-205ENST00000447654 DNAAF2Q9NVR5 837 aaKnown RBP20.85■□□□□ 0.93
HMGA1-205ENST00000447654 RTCBQ9Y3I0 505 aaKnown RBP20.85■□□□□ 0.93
HMGA1-205ENST00000447654 DCDC2CA8MYV0 355 aa20.85■□□□□ 0.93
HMGA1-205ENST00000447654 PRPF3O43395 683 aaKnown RBP20.85■□□□□ 0.93
HMGA1-205ENST00000447654 ATP5HO75947 161 aa20.85■□□□□ 0.93
HMGA1-205ENST00000447654 CCDC15Q0P6D6 951 aa20.85■□□□□ 0.93
HMGA1-205ENST00000447654 NR5A1Q13285 461 aa20.85■□□□□ 0.93
HMGA1-205ENST00000447654 TTI2Q6NXR4 508 aa20.85■□□□□ 0.93
HMGA1-205ENST00000447654 MFSD6Q6ZSS7 791 aa20.85■□□□□ 0.93
HMGA1-205ENST00000447654 FBXO33Q7Z6M2 555 aa20.85■□□□□ 0.93
HMGA1-205ENST00000447654 STK32AQ8WU08 396 aa20.85■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms