RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 C16orf59Q7L2K0 433 aa18.44■□□□□ 0.54
SF3A1-204ENST00000447376 TNFRSF25Q93038 417 aa18.44■□□□□ 0.54
SF3A1-204ENST00000447376 UNC45AQ9H3U1 944 aa18.44■□□□□ 0.54
SF3A1-204ENST00000447376 MAFBQ9Y5Q3 323 aaPredicted RBP18.44■□□□□ 0.54
SF3A1-204ENST00000447376 RANBP2P49792 3224 aaKnown RBP18.44■□□□□ 0.54
SF3A1-204ENST00000447376 MBLAC1A4D2B0 266 aaPredicted RBP18.43■□□□□ 0.54
SF3A1-204ENST00000447376 EDIL3O43854 480 aa18.43■□□□□ 0.54
SF3A1-204ENST00000447376 NEMFO60524 1076 aa18.43■□□□□ 0.54
SF3A1-204ENST00000447376 EFCAB14O75071 495 aa18.43■□□□□ 0.54
SF3A1-204ENST00000447376 BAIAP3O94812 1187 aa18.43■□□□□ 0.54
SF3A1-204ENST00000447376 CTSHP09668 335 aa18.43■□□□□ 0.54
SF3A1-204ENST00000447376 PDCP20941 246 aa18.43■□□□□ 0.54
SF3A1-204ENST00000447376 ADAM17P78536 824 aa18.43■□□□□ 0.54
SF3A1-204ENST00000447376 CALCRLQ16602 461 aa18.43■□□□□ 0.54
SF3A1-204ENST00000447376 TRIM71Q2Q1W2 868 aaKnown RBP18.43■□□□□ 0.54
SF3A1-204ENST00000447376 CNKSR3Q6P9H4 555 aa18.43■□□□□ 0.54
SF3A1-204ENST00000447376 TRMT1LQ7Z2T5 733 aaKnown RBP18.43■□□□□ 0.54
SF3A1-204ENST00000447376 LRCH3Q96II8 777 aa18.43■□□□□ 0.54
SF3A1-204ENST00000447376 KCNMB3Q9NPA1 279 aa18.43■□□□□ 0.54
SF3A1-204ENST00000447376 IGSF9BQ9UPX0 1349 aa18.43■□□□□ 0.54
SF3A1-204ENST00000447376 FAM205CA6NFA0 338 aa18.42■□□□□ 0.54
SF3A1-204ENST00000447376 SOX1O00570 391 aaPredicted RBP18.42■□□□□ 0.54
SF3A1-204ENST00000447376 ATP2B1P20020 1258 aa18.42■□□□□ 0.54
SF3A1-204ENST00000447376 ORC2Q13416 577 aaPredicted RBP18.42■□□□□ 0.54
SF3A1-204ENST00000447376 IKBKEQ14164 716 aa18.42■□□□□ 0.54
SF3A1-204ENST00000447376 EARS2Q5JPH6 523 aaKnown RBP18.42■□□□□ 0.54
SF3A1-204ENST00000447376 IER5Q5VY09 327 aa18.42■□□□□ 0.54
SF3A1-204ENST00000447376 LARP1BQ659C4 914 aaKnown RBP18.42■□□□□ 0.54
SF3A1-204ENST00000447376 POTEDQ86YR6 584 aa18.42■□□□□ 0.54
SF3A1-204ENST00000447376 NOSTRINQ8IVI9 506 aa18.42■□□□□ 0.54
SF3A1-204ENST00000447376 GJA10Q969M2 543 aa18.42■□□□□ 0.54
SF3A1-204ENST00000447376 FAM49AQ9H0Q0 323 aaPredicted RBP18.42■□□□□ 0.54
SF3A1-204ENST00000447376 PCDHA2Q9Y5H9 948 aa18.42■□□□□ 0.54
SF3A1-204ENST00000447376 TRIP12Q14669 1992 aaPredicted RBP18.42■□□□□ 0.54
SF3A1-204ENST00000447376 OATP04181 439 aa18.41■□□□□ 0.54
SF3A1-204ENST00000447376 TMOD1P28289 359 aa18.41■□□□□ 0.54
SF3A1-204ENST00000447376 PRKCEQ02156 737 aa18.41■□□□□ 0.54
SF3A1-204ENST00000447376 PPP2R5CQ13362 524 aa18.41■□□□□ 0.54
SF3A1-204ENST00000447376 ZNF697Q5TEC3 545 aa18.41■□□□□ 0.54
SF3A1-204ENST00000447376 MCTP1Q6DN14 999 aa18.41■□□□□ 0.54
SF3A1-204ENST00000447376 RPAINQ86UA6 219 aa18.41■□□□□ 0.54
SF3A1-204ENST00000447376 SEPT8Q92599 483 aa18.41■□□□□ 0.54
SF3A1-204ENST00000447376 WNT8BQ93098 351 aa18.41■□□□□ 0.54
SF3A1-204ENST00000447376 MSRAQ9UJ68 235 aa18.41■□□□□ 0.54
SF3A1-204ENST00000447376 MYH9P35579 1960 aaKnown RBP18.41■□□□□ 0.54
SF3A1-204ENST00000447376 SMIM35A0A1B0GVV1 85 aa18.4■□□□□ 0.54
SF3A1-204ENST00000447376 MAGEB2O15479 319 aa18.4■□□□□ 0.54
SF3A1-204ENST00000447376 CXCL10P02778 98 aa18.4■□□□□ 0.54
SF3A1-204ENST00000447376 KLRC1P26715 233 aa18.4■□□□□ 0.54
SF3A1-204ENST00000447376 TRAPPC10P48553 1259 aa18.4■□□□□ 0.54
SF3A1-204ENST00000447376 RAB30Q15771 203 aa18.4■□□□□ 0.54
SF3A1-204ENST00000447376 MARCH8Q5T0T0 291 aa18.4■□□□□ 0.54
SF3A1-204ENST00000447376 RASIP1Q5U651 963 aa18.4■□□□□ 0.54
SF3A1-204ENST00000447376 NCAPH2Q6IBW4 605 aa18.4■□□□□ 0.54
SF3A1-204ENST00000447376 MTHFD1LQ6UB35 978 aa18.4■□□□□ 0.54
SF3A1-204ENST00000447376 RUFY4Q6ZNE9 571 aa18.4■□□□□ 0.54
SF3A1-204ENST00000447376 NME8Q8N427 588 aa18.4■□□□□ 0.54
SF3A1-204ENST00000447376 TRAPPC12Q8WVT3 735 aa18.4■□□□□ 0.54
SF3A1-204ENST00000447376 DNAJB3Q8WWF6 145 aa18.4■□□□□ 0.54
SF3A1-204ENST00000447376 SLC9A7Q96T83 725 aa18.4■□□□□ 0.54
SF3A1-204ENST00000447376 PCDHA12Q9UN75 941 aa18.4■□□□□ 0.54
SF3A1-204ENST00000447376 SCN5AQ14524 2016 aa18.39■□□□□ 0.53
SF3A1-204ENST00000447376 ABHD14A-ACY1A0A1B0GW23 586 aa18.39■□□□□ 0.53
SF3A1-204ENST00000447376 KIF28PB7ZC32 967 aa18.39■□□□□ 0.53
SF3A1-204ENST00000447376 NBNO60934 754 aa18.39■□□□□ 0.53
SF3A1-204ENST00000447376 ATP2A2P16615 1042 aaKnown RBP18.39■□□□□ 0.53
SF3A1-204ENST00000447376 MCM7P33993 719 aa18.39■□□□□ 0.53
SF3A1-204ENST00000447376 PSMC5P62195 406 aa18.39■□□□□ 0.53
SF3A1-204ENST00000447376 BECN1Q14457 450 aa18.39■□□□□ 0.53
SF3A1-204ENST00000447376 XKR3Q5GH77 459 aa18.39■□□□□ 0.53
SF3A1-204ENST00000447376 METTL13Q8N6R0 699 aa18.39■□□□□ 0.53
SF3A1-204ENST00000447376 APBB2Q92870 758 aa18.39■□□□□ 0.53
SF3A1-204ENST00000447376 SEPT9Q9UHD8 586 aaPredicted RBP18.39■□□□□ 0.53
SF3A1-204ENST00000447376 P4HBP07237 508 aaKnown RBP18.38■□□□□ 0.53
SF3A1-204ENST00000447376 TXKP42681 527 aa18.38■□□□□ 0.53
SF3A1-204ENST00000447376 QARSP47897 775 aaKnown RBP18.38■□□□□ 0.53
SF3A1-204ENST00000447376 MRPS6P82932 125 aaKnown RBP18.38■□□□□ 0.53
SF3A1-204ENST00000447376 TBC1D8BQ0IIM8 1120 aa18.38■□□□□ 0.53
SF3A1-204ENST00000447376 EPHA7Q15375 998 aa18.38■□□□□ 0.53
SF3A1-204ENST00000447376 TMEM266Q2M3C6 531 aa18.38■□□□□ 0.53
SF3A1-204ENST00000447376 FAM26DQ5JW98 314 aa18.38■□□□□ 0.53
SF3A1-204ENST00000447376 TTC38Q5R3I4 469 aa18.38■□□□□ 0.53
SF3A1-204ENST00000447376 DEFB123Q8N688 67 aa18.38■□□□□ 0.53
SF3A1-204ENST00000447376 PHOSPHO2Q8TCD6 241 aa18.38■□□□□ 0.53
SF3A1-204ENST00000447376 HAS1Q92839 578 aa18.38■□□□□ 0.53
SF3A1-204ENST00000447376 CCDC43Q96MW1 224 aaKnown RBP18.38■□□□□ 0.53
SF3A1-204ENST00000447376 MAP7D2Q96T17 732 aa18.38■□□□□ 0.53
SF3A1-204ENST00000447376 TTC12Q9H892 705 aaPredicted RBP18.38■□□□□ 0.53
SF3A1-204ENST00000447376 CXXC1Q9P0U4 656 aaPredicted RBP18.38■□□□□ 0.53
SF3A1-204ENST00000447376 TMEM265A0A087WTH1 108 aa18.37■□□□□ 0.53
SF3A1-204ENST00000447376 DDX11L8A8MPP1 907 aa18.37■□□□□ 0.53
SF3A1-204ENST00000447376 PDIA4P13667 645 aaKnown RBP18.37■□□□□ 0.53
SF3A1-204ENST00000447376 ATP4AP20648 1035 aa18.37■□□□□ 0.53
SF3A1-204ENST00000447376 U2AF2P26368 475 aaKnown RBP eCLIP18.37■□□□□ 0.534e-7■■□□□ 12
SF3A1-204ENST00000447376 ODR4Q5SWX8 454 aa18.37■□□□□ 0.53
SF3A1-204ENST00000447376 FAM109BQ6ICB4 259 aaPredicted RBP18.37■□□□□ 0.53
SF3A1-204ENST00000447376 TRAF7Q6Q0C0 670 aa18.37■□□□□ 0.53
SF3A1-204ENST00000447376 B3GNT9Q6UX72 402 aa18.37■□□□□ 0.53
SF3A1-204ENST00000447376 EXOC8Q8IYI6 725 aa18.37■□□□□ 0.53
SF3A1-204ENST00000447376 ZNF710Q8N1W2 664 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms