RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 NELFCDQ8IXH7 590 aa6.65□□□□□ -1.34
VPS50-205ENST00000441602 EDEM3Q9BZQ6 932 aa6.65□□□□□ -1.34
VPS50-205ENST00000441602 NUCKS1Q9H1E3 243 aaKnown RBP6.65□□□□□ -1.34
VPS50-205ENST00000441602 ASCC2Q9H1I8 757 aaPredicted RBP6.65□□□□□ -1.34
VPS50-205ENST00000441602 ZNF408Q9H9D4 720 aa6.65□□□□□ -1.34
VPS50-205ENST00000441602 KCND1Q9NSA2 647 aa6.65□□□□□ -1.34
VPS50-205ENST00000441602 TBC1D7Q9P0N9 293 aa6.65□□□□□ -1.34
VPS50-205ENST00000441602 FZD1Q9UP38 647 aa6.65□□□□□ -1.34
VPS50-205ENST00000441602 RBBP6Q7Z6E9 1792 aaKnown RBP6.65□□□□□ -1.34
VPS50-205ENST00000441602 BACH1O14867 736 aa6.65□□□□□ -1.35
VPS50-205ENST00000441602 MFAP3LO75121 409 aa6.65□□□□□ -1.35
VPS50-205ENST00000441602 TRIM21P19474 475 aaKnown RBP6.65□□□□□ -1.35
VPS50-205ENST00000441602 SCP2P22307 547 aa6.65□□□□□ -1.35
VPS50-205ENST00000441602 SMTNP53814 917 aa6.65□□□□□ -1.35
VPS50-205ENST00000441602 MRPS9P82933 396 aaKnown RBP6.65□□□□□ -1.35
VPS50-205ENST00000441602 RAD51AP2Q09MP3 1159 aa6.65□□□□□ -1.35
VPS50-205ENST00000441602 NEDD9Q14511 834 aa6.65□□□□□ -1.35
VPS50-205ENST00000441602 VWA3BQ502W6 1294 aa6.65□□□□□ -1.35
VPS50-205ENST00000441602 XKR9Q5GH70 373 aa6.65□□□□□ -1.35
VPS50-205ENST00000441602 WDR78Q5VTH9 848 aa6.65□□□□□ -1.35
VPS50-205ENST00000441602 FAM160B1Q5W0V3 765 aa6.65□□□□□ -1.35
VPS50-205ENST00000441602 B3GNT9Q6UX72 402 aa6.65□□□□□ -1.35
VPS50-205ENST00000441602 CYP26C1Q6V0L0 522 aa6.65□□□□□ -1.35
VPS50-205ENST00000441602 SYCP3Q8IZU3 236 aa6.65□□□□□ -1.35
VPS50-205ENST00000441602 BANK1Q8NDB2 785 aa6.65□□□□□ -1.35
VPS50-205ENST00000441602 PIGOQ8TEQ8 1089 aa6.65□□□□□ -1.35
VPS50-205ENST00000441602 HVCN1Q96D96 273 aa6.65□□□□□ -1.35
VPS50-205ENST00000441602 SEMA6BQ9H3T3 888 aa6.65□□□□□ -1.35
VPS50-205ENST00000441602 TMEM206Q9H813 350 aa6.65□□□□□ -1.35
VPS50-205ENST00000441602 JPH1Q9HDC5 661 aaPredicted RBP6.65□□□□□ -1.35
VPS50-205ENST00000441602 SLC9A2Q9UBY0 812 aa6.65□□□□□ -1.35
VPS50-205ENST00000441602 SLC45A1Q9Y2W3 748 aa6.65□□□□□ -1.35
VPS50-205ENST00000441602 SLC16A3O15427 465 aaKnown RBP6.64□□□□□ -1.35
VPS50-205ENST00000441602 TEX33O43247 280 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 TNNT1P13805 278 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 ICAM3P32942 547 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 GCLCP48506 637 aaPredicted RBP6.64□□□□□ -1.35
VPS50-205ENST00000441602 SNRPFP62306 86 aaKnown RBP6.64□□□□□ -1.35
VPS50-205ENST00000441602 BMT2Q1RMZ1 405 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 ODR4Q5SWX8 454 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 LDLRAD1Q5T700 205 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.64□□□□□ -1.35
VPS50-205ENST00000441602 CCAR2Q8N163 923 aaKnown RBP6.64□□□□□ -1.35
VPS50-205ENST00000441602 MCPH1Q8NEM0 835 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 NEK11Q8NG66 645 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 OR8K1Q8NGG5 319 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 SMCR8Q8TEV9 937 aaPredicted RBP6.64□□□□□ -1.35
VPS50-205ENST00000441602 CPLX3Q8WVH0 158 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 ACCSQ96QU6 501 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 MMP19Q99542 508 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 RUSC1Q9BVN2 902 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 GBA2Q9HCG7 927 aaPredicted RBP6.64□□□□□ -1.35
VPS50-205ENST00000441602 INTS13Q9NVM9 706 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 RIPK3Q9Y572 518 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 PAXBP1Q9Y5B6 917 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.64□□□□□ -1.35
VPS50-205ENST00000441602 SCN4AP35499 1836 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 ASB14A6NK59 587 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 KRT9P35527 623 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 CYLC1P35663 651 aaPredicted RBP6.64□□□□□ -1.35
VPS50-205ENST00000441602 PBX1P40424 430 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 ALDH5A1P51649 535 aaPredicted RBP6.64□□□□□ -1.35
VPS50-205ENST00000441602 PSMC6P62333 389 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 CACNB1Q02641 598 aaPredicted RBP6.64□□□□□ -1.35
VPS50-205ENST00000441602 ADAM9Q13443 819 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 MYBPC2Q14324 1141 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 FIGNQ5HY92 759 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 TREML2Q5T2D2 321 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 C1orf186Q6ZWK4 172 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 EXOC8Q8IYI6 725 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 ZFP91Q96JP5 570 aaPredicted RBP6.64□□□□□ -1.35
VPS50-205ENST00000441602 CLMNQ96JQ2 1002 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 ERGIC2Q96RQ1 377 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 NDST4Q9H3R1 872 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 TRAF3IP3Q9Y228 551 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 R3HCC1Q9Y3T6 440 aaKnown RBP6.64□□□□□ -1.35
VPS50-205ENST00000441602 PPME1Q9Y570 386 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 IVNS1ABPQ9Y6Y0 642 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 NPHP3-ACAD11A0A0J9YXS1 232 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 SPATA31C2B4DYI2 1134 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 COBLO75128 1261 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 CCDC175P0C221 793 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 NR2F2P24468 414 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 PMS1P54277 932 aaKnown RBP6.64□□□□□ -1.35
VPS50-205ENST00000441602 RBL2Q08999 1139 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 ITGB3BPQ13352 177 aaPredicted RBP6.64□□□□□ -1.35
VPS50-205ENST00000441602 ARSHQ5FYA8 562 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 APTXQ7Z2E3 356 aaKnown RBP6.64□□□□□ -1.35
VPS50-205ENST00000441602 FRMD5Q7Z6J6 570 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 FMNL3Q8IVF7 1028 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 KIF18AQ8NI77 898 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 ZNF507Q8TCN5 953 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 KIFAP3Q92845 792 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 HPS3Q969F9 1004 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 FAM167AQ96KS9 214 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 IFT74Q96LB3 600 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 LUC7LQ9NQ29 371 aaKnown RBP6.64□□□□□ -1.35
VPS50-205ENST00000441602 NRBP2Q9NSY0 501 aa6.64□□□□□ -1.35
VPS50-205ENST00000441602 ARMCX3Q9UH62 379 aaPredicted RBP6.64□□□□□ -1.35
VPS50-205ENST00000441602 FRMD4BQ9Y2L6 1034 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms