RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 PNMA3Q9UL41 463 aa16.56■□□□□ 0.24
PTPRF-206ENST00000429895 PCDHA13Q9Y5I0 950 aa16.56■□□□□ 0.24
PTPRF-206ENST00000429895 PLXNC1O60486 1568 aa16.56■□□□□ 0.24
PTPRF-206ENST00000429895 DENND3A2RUS2 1198 aa16.56■□□□□ 0.24
PTPRF-206ENST00000429895 RPSAP08865 295 aaKnown RBP16.56■□□□□ 0.24
PTPRF-206ENST00000429895 SLC7A5Q01650 507 aa16.56■□□□□ 0.24
PTPRF-206ENST00000429895 SH3RF3Q8TEJ3 882 aaPredicted RBP16.56■□□□□ 0.24
PTPRF-206ENST00000429895 CTTNBP2Q8WZ74 1663 aa16.56■□□□□ 0.24
PTPRF-206ENST00000429895 hCG_1984214I3L0E3 225 aa16.56■□□□□ 0.24
PTPRF-206ENST00000429895 KLC3Q6P597 504 aa16.56■□□□□ 0.24
PTPRF-206ENST00000429895 ZNF713Q8N859 430 aaPredicted RBP16.56■□□□□ 0.24
PTPRF-206ENST00000429895 MAP2K2P36507 400 aa16.56■□□□□ 0.24
PTPRF-206ENST00000429895 GRAPQ13588 217 aa16.56■□□□□ 0.24
PTPRF-206ENST00000429895 SURF1Q15526 300 aa16.56■□□□□ 0.24
PTPRF-206ENST00000429895 GRAPLQ8TC17 118 aaPredicted RBP16.56■□□□□ 0.24
PTPRF-206ENST00000429895 BHMT2Q9H2M3 363 aa16.56■□□□□ 0.24
PTPRF-206ENST00000429895 NEMP1O14524 444 aa16.55■□□□□ 0.24
PTPRF-206ENST00000429895 DPYSL4O14531 572 aa16.55■□□□□ 0.24
PTPRF-206ENST00000429895 SERPING1P05155 500 aa16.55■□□□□ 0.24
PTPRF-206ENST00000429895 PDCD2Q16342 344 aaPredicted RBP16.55■□□□□ 0.24
PTPRF-206ENST00000429895 RC3H1Q5TC82 1133 aaKnown RBP16.55■□□□□ 0.24
PTPRF-206ENST00000429895 N4BP2L2Q92802 583 aaPredicted RBP16.55■□□□□ 0.24
PTPRF-206ENST00000429895 GPR108Q9NPR9 543 aa16.55■□□□□ 0.24
PTPRF-206ENST00000429895 RWDD2AQ9UIY3 292 aa16.55■□□□□ 0.24
PTPRF-206ENST00000429895 MMP10P09238 476 aa16.55■□□□□ 0.24
PTPRF-206ENST00000429895 KCNA4P22459 653 aa16.55■□□□□ 0.24
PTPRF-206ENST00000429895 APBA1Q02410 837 aa16.55■□□□□ 0.24
PTPRF-206ENST00000429895 RTKN2Q8IZC4 609 aa16.55■□□□□ 0.24
PTPRF-206ENST00000429895 MED4Q9NPJ6 270 aa16.55■□□□□ 0.24
PTPRF-206ENST00000429895 SFMBT1Q9UHJ3 866 aa16.55■□□□□ 0.24
PTPRF-206ENST00000429895 SUFUQ9UMX1 484 aa16.55■□□□□ 0.24
PTPRF-206ENST00000429895 CHEK2O96017 543 aa16.55■□□□□ 0.24
PTPRF-206ENST00000429895 ABCD1P33897 745 aa16.55■□□□□ 0.24
PTPRF-206ENST00000429895 RECQLP46063 649 aaPredicted RBP16.55■□□□□ 0.24
PTPRF-206ENST00000429895 TEX2Q8IWB9 1127 aa16.55■□□□□ 0.24
PTPRF-206ENST00000429895 NDUFAF2Q8N183 169 aa16.55■□□□□ 0.24
PTPRF-206ENST00000429895 SNX19Q92543 992 aa16.55■□□□□ 0.24
PTPRF-206ENST00000429895 AIFM3Q96NN9 605 aa16.55■□□□□ 0.24
PTPRF-206ENST00000429895 PLEKHA8P1O95397 391 aa16.55■□□□□ 0.24
PTPRF-206ENST00000429895 HADHAP40939 763 aa16.55■□□□□ 0.24
PTPRF-206ENST00000429895 EPHB4P54760 987 aa16.55■□□□□ 0.24
PTPRF-206ENST00000429895 POLR3EQ9NVU0 708 aa16.55■□□□□ 0.24
PTPRF-206ENST00000429895 TWF2Q6IBS0 349 aaKnown RBP16.55■□□□□ 0.24
PTPRF-206ENST00000429895 PAGE5Q96GU1 130 aa16.55■□□□□ 0.24
PTPRF-206ENST00000429895 SUSD4Q5VX71 490 aa16.54■□□□□ 0.24
PTPRF-206ENST00000429895 FASTKD5Q7L8L6 764 aaKnown RBP16.54■□□□□ 0.24
PTPRF-206ENST00000429895 PIP4K2CQ8TBX8 421 aa16.54■□□□□ 0.24
PTPRF-206ENST00000429895 PRPF3O43395 683 aaKnown RBP16.54■□□□□ 0.24
PTPRF-206ENST00000429895 SASH1O94885 1247 aa16.54■□□□□ 0.24
PTPRF-206ENST00000429895 PEX19P40855 299 aa16.54■□□□□ 0.24
PTPRF-206ENST00000429895 SPATS2Q86XZ4 545 aaKnown RBP16.54■□□□□ 0.24
PTPRF-206ENST00000429895 PYROXD1Q8WU10 500 aa16.54■□□□□ 0.24
PTPRF-206ENST00000429895 AFG1LQ8WV93 481 aa16.54■□□□□ 0.24
PTPRF-206ENST00000429895 SKIV2LQ15477 1246 aaKnown RBP16.54■□□□□ 0.24
PTPRF-206ENST00000429895 ANO4Q32M45 955 aa16.54■□□□□ 0.24
PTPRF-206ENST00000429895 ZNF667Q5HYK9 610 aa16.54■□□□□ 0.24
PTPRF-206ENST00000429895 ZHX2Q9Y6X8 837 aa16.54■□□□□ 0.24
PTPRF-206ENST00000429895 ABCB11O95342 1321 aa16.54■□□□□ 0.24
PTPRF-206ENST00000429895 SLFN14P0C7P3 912 aa16.54■□□□□ 0.24
PTPRF-206ENST00000429895 DR1Q01658 176 aa16.54■□□□□ 0.24
PTPRF-206ENST00000429895 PPP1R2P3Q6NXS1 205 aa16.54■□□□□ 0.24
PTPRF-206ENST00000429895 SEPT12Q8IYM1 358 aa16.54■□□□□ 0.24
PTPRF-206ENST00000429895 PRPF38AQ8NAV1 312 aaKnown RBP16.54■□□□□ 0.24
PTPRF-206ENST00000429895 TCP11Q8WWU5 503 aa16.54■□□□□ 0.24
PTPRF-206ENST00000429895 NCLNQ969V3 563 aa16.54■□□□□ 0.24
PTPRF-206ENST00000429895 IFT43Q96FT9 208 aa16.54■□□□□ 0.24
PTPRF-206ENST00000429895 THOC1Q96FV9 657 aaKnown RBP16.54■□□□□ 0.24
PTPRF-206ENST00000429895 EDEM3Q9BZQ6 932 aa16.54■□□□□ 0.24
PTPRF-206ENST00000429895 PPARGP37231 505 aaPredicted RBP16.54■□□□□ 0.24
PTPRF-206ENST00000429895 MORC4Q8TE76 937 aa16.54■□□□□ 0.24
PTPRF-206ENST00000429895 UBE2Q2Q8WVN8 375 aa16.54■□□□□ 0.24
PTPRF-206ENST00000429895 SARS2Q9NP81 518 aaKnown RBP16.54■□□□□ 0.24
PTPRF-206ENST00000429895 FAM196BA6NMK8 535 aa16.53■□□□□ 0.24
PTPRF-206ENST00000429895 SLC8A1P32418 973 aa16.53■□□□□ 0.24
PTPRF-206ENST00000429895 ARHGDIAP52565 204 aa16.53■□□□□ 0.24
PTPRF-206ENST00000429895 DRP2Q13474 957 aa16.53■□□□□ 0.24
PTPRF-206ENST00000429895 MTMR1Q13613 665 aa16.53■□□□□ 0.24
PTPRF-206ENST00000429895 CCDC124Q96CT7 223 aaKnown RBP16.53■□□□□ 0.24
PTPRF-206ENST00000429895 TMEM259Q4ZIN3 620 aa16.53■□□□□ 0.24
PTPRF-206ENST00000429895 PBKQ96KB5 322 aa16.53■□□□□ 0.24
PTPRF-206ENST00000429895 POLD4Q9HCU8 107 aa16.53■□□□□ 0.24
PTPRF-206ENST00000429895 MRPS25P82663 173 aaKnown RBP16.53■□□□□ 0.24
PTPRF-206ENST00000429895 THAP9Q9H5L6 903 aa16.53■□□□□ 0.24
PTPRF-206ENST00000429895 NPC1L1Q9UHC9 1359 aa16.53■□□□□ 0.24
PTPRF-206ENST00000429895 SHANK2Q9UPX8 1470 aa16.53■□□□□ 0.24
PTPRF-206ENST00000429895 FAM135BQ49AJ0 1406 aa16.53■□□□□ 0.24
PTPRF-206ENST00000429895 F8W8V4 182 aa16.53■□□□□ 0.24
PTPRF-206ENST00000429895 CTNND1O60716 968 aaKnown RBP16.53■□□□□ 0.24
PTPRF-206ENST00000429895 ACSL3O95573 720 aa16.53■□□□□ 0.24
PTPRF-206ENST00000429895 CYP2D6P10635 497 aa16.53■□□□□ 0.24
PTPRF-206ENST00000429895 CYP27A1Q02318 531 aa16.53■□□□□ 0.24
PTPRF-206ENST00000429895 RASGRF1Q13972 1273 aa16.53■□□□□ 0.24
PTPRF-206ENST00000429895 SLFN12LQ6IEE8 588 aa16.53■□□□□ 0.24
PTPRF-206ENST00000429895 KLHL8Q9P2G9 620 aaPredicted RBP16.53■□□□□ 0.24
PTPRF-206ENST00000429895 PCDHA6Q9UN73 950 aa16.53■□□□□ 0.24
PTPRF-206ENST00000429895 PCDHA8Q9Y5H6 950 aa16.53■□□□□ 0.24
PTPRF-206ENST00000429895 TCOF1Q13428 1488 aaKnown RBP16.53■□□□□ 0.24
PTPRF-206ENST00000429895 USP17L5A8MUK1 530 aa16.53■□□□□ 0.24
PTPRF-206ENST00000429895 CREB3O43889 395 aa16.53■□□□□ 0.24
PTPRF-206ENST00000429895 TBCCQ15814 346 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms