RNA–Protein interactions for RNA: ENST00000429102.6

CDH3-202, Transcript of cadherin 3, humanhuman

TSL 1 (best) BASIC

Gene CDH3, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-202ENST00000429102 ACP6Q9NPH0 428 aa13.62□□□□□ -0.23
CDH3-202ENST00000429102 NFIAQ12857 509 aa13.62□□□□□ -0.23
CDH3-202ENST00000429102 MEI1Q5TIA1 1274 aa13.62□□□□□ -0.23
CDH3-202ENST00000429102 KIAA0825Q8IV33 1275 aa13.62□□□□□ -0.23
CDH3-202ENST00000429102 THOC1Q96FV9 657 aaKnown RBP13.62□□□□□ -0.23
CDH3-202ENST00000429102 TAF1DQ9H5J8 278 aaPredicted RBP13.62□□□□□ -0.23
CDH3-202ENST00000429102 GGA1Q9UJY5 639 aa13.62□□□□□ -0.23
CDH3-202ENST00000429102 H2AFZP0C0S5 128 aa13.62□□□□□ -0.23
CDH3-202ENST00000429102 CYP11B2P19099 503 aa13.62□□□□□ -0.23
CDH3-202ENST00000429102 LRRC14Q15048 493 aa13.62□□□□□ -0.23
CDH3-202ENST00000429102 FIGNQ5HY92 759 aa13.62□□□□□ -0.23
CDH3-202ENST00000429102 GBP6Q6ZN66 633 aa13.62□□□□□ -0.23
CDH3-202ENST00000429102 H2AFVQ71UI9 128 aa13.62□□□□□ -0.23
CDH3-202ENST00000429102 REEP2Q9BRK0 252 aa13.62□□□□□ -0.23
CDH3-202ENST00000429102 LZTS2Q9BRK4 669 aa13.62□□□□□ -0.23
CDH3-202ENST00000429102 ADAM33Q9BZ11 813 aa13.62□□□□□ -0.23
CDH3-202ENST00000429102 EPN3Q9H201 632 aa13.62□□□□□ -0.23
CDH3-202ENST00000429102 RIC8AQ9NPQ8 531 aa13.62□□□□□ -0.23
CDH3-202ENST00000429102 HAUS2Q9NVX0 235 aa13.62□□□□□ -0.23
CDH3-202ENST00000429102 CNOT8Q9UFF9 292 aaKnown RBP13.62□□□□□ -0.23
CDH3-202ENST00000429102 PNMA2Q9UL42 364 aa13.62□□□□□ -0.23
CDH3-202ENST00000429102 ATMINO43313 823 aaPredicted RBP13.61□□□□□ -0.23
CDH3-202ENST00000429102 TBCAO75347 108 aaKnown RBP13.61□□□□□ -0.23
CDH3-202ENST00000429102 ASTE1Q2TB18 679 aaPredicted RBP13.61□□□□□ -0.23
CDH3-202ENST00000429102 MCTP2Q6DN12 878 aa13.61□□□□□ -0.23
CDH3-202ENST00000429102 PNMA8AQ86V59 439 aaPredicted RBP13.61□□□□□ -0.23
CDH3-202ENST00000429102 DAGLBQ8NCG7 672 aa13.61□□□□□ -0.23
CDH3-202ENST00000429102 RBM46Q8TBY0 533 aaKnown RBP13.61□□□□□ -0.23
CDH3-202ENST00000429102 MAGEF1Q9HAY2 307 aa13.61□□□□□ -0.23
CDH3-202ENST00000429102 OPLAHO14841 1288 aa13.61□□□□□ -0.23
CDH3-202ENST00000429102 SHOX2O60902 331 aaPredicted RBP13.61□□□□□ -0.23
CDH3-202ENST00000429102 VIMP08670 466 aaKnown RBP13.61□□□□□ -0.23
CDH3-202ENST00000429102 POLD1P28340 1107 aa13.61□□□□□ -0.23
CDH3-202ENST00000429102 C16orf86Q6ZW13 317 aa13.61□□□□□ -0.23
CDH3-202ENST00000429102 MRRFQ96E11 262 aaKnown RBP13.61□□□□□ -0.23
CDH3-202ENST00000429102 NAGPAQ9UK23 515 aa13.61□□□□□ -0.23
CDH3-202ENST00000429102 DNM3Q9UQ16 869 aa13.61□□□□□ -0.23
CDH3-202ENST00000429102 NUP98P52948 1817 aa13.61□□□□□ -0.23
CDH3-202ENST00000429102 GUCY2CP25092 1073 aa13.6□□□□□ -0.23
CDH3-202ENST00000429102 QRICH1Q2TAL8 776 aa13.6□□□□□ -0.23
CDH3-202ENST00000429102 FAM133BQ5BKY9 247 aaKnown RBP13.6□□□□□ -0.23
CDH3-202ENST00000429102 UBAP2Q5T6F2 1119 aaKnown RBP13.6□□□□□ -0.23
CDH3-202ENST00000429102 CATSPER3Q86XQ3 398 aa13.6□□□□□ -0.23
CDH3-202ENST00000429102 INPP4AQ96PE3 977 aaPredicted RBP13.6□□□□□ -0.23
CDH3-202ENST00000429102 SSU72P8A0A1W2PR75 194 aa13.6□□□□□ -0.23
CDH3-202ENST00000429102 PGRMC1O00264 195 aaKnown RBP13.6□□□□□ -0.23
CDH3-202ENST00000429102 CFBP00751 764 aa13.6□□□□□ -0.23
CDH3-202ENST00000429102 TM4SF1P30408 202 aa13.6□□□□□ -0.23
CDH3-202ENST00000429102 TRIP13Q15645 432 aaPredicted RBP13.6□□□□□ -0.23
CDH3-202ENST00000429102 ZNF622Q969S3 477 aaKnown RBP eCLIP13.6□□□□□ -0.23
CDH3-202ENST00000429102 GDF3Q9NR23 364 aa13.6□□□□□ -0.23
CDH3-202ENST00000429102 KCNQ5Q9NR82 932 aa13.6□□□□□ -0.23
CDH3-202ENST00000429102 TAS2R14Q9NYV8 317 aa13.6□□□□□ -0.23
CDH3-202ENST00000429102 BAIAP2L1Q9UHR4 511 aa13.6□□□□□ -0.23
CDH3-202ENST00000429102 SCAF8Q9UPN6 1271 aaKnown RBP13.6□□□□□ -0.23
CDH3-202ENST00000429102 THRAP3Q9Y2W1 955 aaKnown RBP13.6□□□□□ -0.23
CDH3-202ENST00000429102 CHD4Q14839 1912 aa13.6□□□□□ -0.23
CDH3-202ENST00000429102 LMTK3Q96Q04 1460 aa13.6□□□□□ -0.23
CDH3-202ENST00000429102 CTNND1O60716 968 aaKnown RBP13.6□□□□□ -0.23
CDH3-202ENST00000429102 AFPP02771 609 aaKnown RBP13.6□□□□□ -0.23
CDH3-202ENST00000429102 KCNJ1P48048 391 aa13.6□□□□□ -0.23
CDH3-202ENST00000429102 GALCP54803 685 aa13.6□□□□□ -0.23
CDH3-202ENST00000429102 CDK17Q00537 523 aa13.6□□□□□ -0.23
CDH3-202ENST00000429102 TRIM59Q8IWR1 403 aa13.6□□□□□ -0.23
CDH3-202ENST00000429102 SYCP3Q8IZU3 236 aa13.6□□□□□ -0.23
CDH3-202ENST00000429102 RNF10Q8N5U6 811 aaKnown RBP13.6□□□□□ -0.23
CDH3-202ENST00000429102 CYFIP2Q96F07 1278 aa13.6□□□□□ -0.23
CDH3-202ENST00000429102 FAM84AQ96KN4 292 aa13.6□□□□□ -0.23
CDH3-202ENST00000429102 NARFQ9UHQ1 456 aa13.6□□□□□ -0.23
CDH3-202ENST00000429102 ZNF142P52746 1687 aaPredicted RBP13.6□□□□□ -0.23
CDH3-202ENST00000429102 SHBGP04278 402 aa13.59□□□□□ -0.23
CDH3-202ENST00000429102 PON1P27169 355 aa13.59□□□□□ -0.23
CDH3-202ENST00000429102 HNRNPH3P31942 346 aaKnown RBP13.59□□□□□ -0.23
CDH3-202ENST00000429102 MAP2K2P36507 400 aa13.59□□□□□ -0.23
CDH3-202ENST00000429102 PPP1R2P41236 205 aa13.59□□□□□ -0.23
CDH3-202ENST00000429102 UAP1Q16222 522 aaPredicted RBP13.59□□□□□ -0.23
CDH3-202ENST00000429102 ARSHQ5FYA8 562 aa13.59□□□□□ -0.23
CDH3-202ENST00000429102 TRAPPC3LQ5T215 181 aa13.59□□□□□ -0.23
CDH3-202ENST00000429102 MSL3Q8N5Y2 521 aaKnown RBP13.59□□□□□ -0.23
CDH3-202ENST00000429102 BTBD6Q96KE9 485 aa13.59□□□□□ -0.23
CDH3-202ENST00000429102 SERPINB13Q9UIV8 391 aa13.59□□□□□ -0.23
CDH3-202ENST00000429102 FLOT1O75955 427 aa13.59□□□□□ -0.23
CDH3-202ENST00000429102 CALCAP01258 141 aa13.59□□□□□ -0.23
CDH3-202ENST00000429102 NSMFQ6X4W1 530 aa13.59□□□□□ -0.23
CDH3-202ENST00000429102 VPS36Q86VN1 386 aa13.59□□□□□ -0.23
CDH3-202ENST00000429102 PALB2Q86YC2 1186 aa13.59□□□□□ -0.23
CDH3-202ENST00000429102 TCP11Q8WWU5 503 aa13.59□□□□□ -0.23
CDH3-202ENST00000429102 FAM118BQ9BPY3 351 aa13.59□□□□□ -0.23
CDH3-202ENST00000429102 POLLQ9UGP5 575 aa13.59□□□□□ -0.23
CDH3-202ENST00000429102 PPP1R9AQ9ULJ8 1098 aa13.59□□□□□ -0.23
CDH3-202ENST00000429102 UTP11Q9Y3A2 253 aaKnown RBP13.59□□□□□ -0.23
CDH3-202ENST00000429102 DAGLAQ9Y4D2 1042 aa13.59□□□□□ -0.23
CDH3-202ENST00000429102 PNMA6FA0A0J9YX94 578 aa13.59□□□□□ -0.23
CDH3-202ENST00000429102 TISP43B9A030 160 aa13.59□□□□□ -0.23
CDH3-202ENST00000429102 GJC1P36383 396 aa13.59□□□□□ -0.23
CDH3-202ENST00000429102 FXR2P51116 673 aaKnown RBP eCLIP13.59□□□□□ -0.23
CDH3-202ENST00000429102 ZNF844Q08AG5 666 aa13.59□□□□□ -0.23
CDH3-202ENST00000429102 GRAPQ13588 217 aa13.59□□□□□ -0.23
CDH3-202ENST00000429102 SNX1Q13596 522 aa13.59□□□□□ -0.23
CDH3-202ENST00000429102 MESDQ14696 234 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms