RNA–Protein interactions for RNA: ENST00000428704.1

HDAC1-202, Transcript of histone deacetylase 1, humanhuman

TSL 2

Gene HDAC1, Length 664 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-202ENST00000428704 ATL3Q6DD88 541 aa9.91□□□□□ -0.82
HDAC1-202ENST00000428704 NFRKBQ6P4R8 1299 aa9.91□□□□□ -0.82
HDAC1-202ENST00000428704 LRRC8DQ7L1W4 858 aa9.91□□□□□ -0.82
HDAC1-202ENST00000428704 STAG2Q8N3U4 1231 aa9.91□□□□□ -0.82
HDAC1-202ENST00000428704 ANKK1Q8NFD2 765 aa9.91□□□□□ -0.82
HDAC1-202ENST00000428704 WNT2BQ93097 391 aa9.91□□□□□ -0.82
HDAC1-202ENST00000428704 TCEANC2Q96MN5 208 aa9.91□□□□□ -0.82
HDAC1-202ENST00000428704 UBAC1Q9BSL1 405 aa9.91□□□□□ -0.82
HDAC1-202ENST00000428704 UBA5Q9GZZ9 404 aa9.91□□□□□ -0.82
HDAC1-202ENST00000428704 ZSCAN16Q9H4T2 348 aaPredicted RBP9.91□□□□□ -0.82
HDAC1-202ENST00000428704 SLC24A3Q9HC58 644 aa9.91□□□□□ -0.82
HDAC1-202ENST00000428704 BAHCC1Q9P281 2608 aa9.91□□□□□ -0.82
HDAC1-202ENST00000428704 PLXNA3P51805 1871 aa9.91□□□□□ -0.82
HDAC1-202ENST00000428704 KIAA1217Q5T5P2 1943 aa9.9□□□□□ -0.82
HDAC1-202ENST00000428704 KMT2EQ8IZD2 1858 aa9.9□□□□□ -0.82
HDAC1-202ENST00000428704 DHX16O60231 1041 aaKnown RBP9.9□□□□□ -0.82
HDAC1-202ENST00000428704 TBX10O75333 385 aa9.9□□□□□ -0.82
HDAC1-202ENST00000428704 PARNO95453 639 aaKnown RBP9.9□□□□□ -0.82
HDAC1-202ENST00000428704 AMHP03971 560 aa9.9□□□□□ -0.82
HDAC1-202ENST00000428704 CHMP4BP1P59074 171 aa9.9□□□□□ -0.82
HDAC1-202ENST00000428704 PTPN11Q06124 597 aaPredicted RBP9.9□□□□□ -0.82
HDAC1-202ENST00000428704 HYAL1Q12794 435 aa9.9□□□□□ -0.82
HDAC1-202ENST00000428704 GPNMBQ14956 572 aa9.9□□□□□ -0.82
HDAC1-202ENST00000428704 CDC37Q16543 378 aaPredicted RBP9.9□□□□□ -0.82
HDAC1-202ENST00000428704 TCTN1Q2MV58 587 aa9.9□□□□□ -0.82
HDAC1-202ENST00000428704 BRDTQ58F21 947 aaPredicted RBP9.9□□□□□ -0.82
HDAC1-202ENST00000428704 IFIT1BQ5T764 474 aaKnown RBP9.9□□□□□ -0.82
HDAC1-202ENST00000428704 FOXD4L5Q5VV16 416 aaPredicted RBP9.9□□□□□ -0.82
HDAC1-202ENST00000428704 TAPT1Q6NXT6 567 aa9.9□□□□□ -0.82
HDAC1-202ENST00000428704 CAVIN1Q6NZI2 390 aaKnown RBP9.9□□□□□ -0.82
HDAC1-202ENST00000428704 LRSAM1Q6UWE0 723 aa9.9□□□□□ -0.82
HDAC1-202ENST00000428704 NSMFQ6X4W1 530 aa9.9□□□□□ -0.82
HDAC1-202ENST00000428704 SLC30A10Q6XR72 485 aa9.9□□□□□ -0.82
HDAC1-202ENST00000428704 CHST3Q7LGC8 479 aa9.9□□□□□ -0.82
HDAC1-202ENST00000428704 FBXO11Q86XK2 927 aa9.9□□□□□ -0.82
HDAC1-202ENST00000428704 ADGRF4Q8IZF3 695 aa9.9□□□□□ -0.82
HDAC1-202ENST00000428704 MYOCDQ8IZQ8 938 aa9.9□□□□□ -0.82
HDAC1-202ENST00000428704 NSUN7Q8NE18 718 aaKnown RBP9.9□□□□□ -0.82
HDAC1-202ENST00000428704 FOXD4L4Q8WXT5 416 aaPredicted RBP9.9□□□□□ -0.82
HDAC1-202ENST00000428704 RNF166Q96A37 237 aaPredicted RBP9.9□□□□□ -0.82
HDAC1-202ENST00000428704 YME1L1Q96TA2 773 aa9.9□□□□□ -0.82
HDAC1-202ENST00000428704 IGFLR1Q9H665 355 aa9.9□□□□□ -0.82
HDAC1-202ENST00000428704 TMEM134Q9H6X4 195 aa9.9□□□□□ -0.82
HDAC1-202ENST00000428704 TMEM63CQ9P1W3 806 aa9.9□□□□□ -0.82
HDAC1-202ENST00000428704 MAD2L2Q9UI95 211 aa9.9□□□□□ -0.82
HDAC1-202ENST00000428704 TPRP12270 2363 aaKnown RBP9.89□□□□□ -0.83
HDAC1-202ENST00000428704 DNAH14Q0VDD8 3507 aa9.89□□□□□ -0.83
HDAC1-202ENST00000428704 VPS13AQ96RL7 3174 aa9.89□□□□□ -0.83
HDAC1-202ENST00000428704 PALM3A6NDB9 673 aaPredicted RBP9.89□□□□□ -0.83
HDAC1-202ENST00000428704 NBNO60934 754 aa9.89□□□□□ -0.83
HDAC1-202ENST00000428704 CTDNEP1O95476 244 aa9.89□□□□□ -0.83
HDAC1-202ENST00000428704 PDGFBP01127 241 aaPredicted RBP9.89□□□□□ -0.83
HDAC1-202ENST00000428704 CXCL10P02778 98 aa9.89□□□□□ -0.83
HDAC1-202ENST00000428704 PARP1P09874 1014 aaKnown RBP9.89□□□□□ -0.83
HDAC1-202ENST00000428704 NDUFV1P49821 464 aa9.89□□□□□ -0.83
HDAC1-202ENST00000428704 KRT85P78386 507 aa9.89□□□□□ -0.83
HDAC1-202ENST00000428704 HTRA4P83105 476 aaPredicted RBP9.89□□□□□ -0.83
HDAC1-202ENST00000428704 FGD1P98174 961 aa9.89□□□□□ -0.83
HDAC1-202ENST00000428704 TROAPQ12815 778 aa9.89□□□□□ -0.83
HDAC1-202ENST00000428704 TRDNQ13061 729 aa9.89□□□□□ -0.83
HDAC1-202ENST00000428704 BAATQ14032 418 aaPredicted RBP9.89□□□□□ -0.83
HDAC1-202ENST00000428704 GRM4Q14833 912 aa9.89□□□□□ -0.83
HDAC1-202ENST00000428704 PTGISQ16647 500 aa9.89□□□□□ -0.83
HDAC1-202ENST00000428704 QRICH1Q2TAL8 776 aa9.89□□□□□ -0.83
HDAC1-202ENST00000428704 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.89□□□□□ -0.832e-9■■□□□ 12.8
HDAC1-202ENST00000428704 RALYLQ86SE5 291 aaKnown RBP9.89□□□□□ -0.83
HDAC1-202ENST00000428704 TMEM192Q8IY95 271 aa9.89□□□□□ -0.83
HDAC1-202ENST00000428704 OR6J1Q8NGC5 347 aa9.89□□□□□ -0.83
HDAC1-202ENST00000428704 IGDCC4Q8TDY8 1250 aa9.89□□□□□ -0.83
HDAC1-202ENST00000428704 MORC4Q8TE76 937 aa9.89□□□□□ -0.83
HDAC1-202ENST00000428704 KCTD12Q96CX2 325 aaKnown RBP9.89□□□□□ -0.83
HDAC1-202ENST00000428704 MTMR8Q96EF0 704 aa9.89□□□□□ -0.83
HDAC1-202ENST00000428704 TMEM87BQ96K49 555 aa9.89□□□□□ -0.83
HDAC1-202ENST00000428704 SCAND2PQ9GZW5 306 aaPredicted RBP9.89□□□□□ -0.83
HDAC1-202ENST00000428704 JMJD4Q9H9V9 463 aa9.89□□□□□ -0.83
HDAC1-202ENST00000428704 VTA1Q9NP79 307 aa9.89□□□□□ -0.83
HDAC1-202ENST00000428704 BAZ2BQ9UIF8 2168 aaKnown RBP9.89□□□□□ -0.83
HDAC1-202ENST00000428704 PKD1L2Q7Z442 2459 aa9.88□□□□□ -0.83
HDAC1-202ENST00000428704 OPLAHO14841 1288 aa9.88□□□□□ -0.83
HDAC1-202ENST00000428704 IFIT3O14879 490 aaKnown RBP9.88□□□□□ -0.83
HDAC1-202ENST00000428704 PRC1O43663 620 aa9.88□□□□□ -0.83
HDAC1-202ENST00000428704 PPP1R11O60927 126 aaPredicted RBP9.88□□□□□ -0.83
HDAC1-202ENST00000428704 CSPG5O95196 566 aa9.88□□□□□ -0.83
HDAC1-202ENST00000428704 ALDH5A1P51649 535 aaPredicted RBP9.88□□□□□ -0.83
HDAC1-202ENST00000428704 RPS6P62753 249 aaKnown RBP9.88□□□□□ -0.83
HDAC1-202ENST00000428704 DNM1Q05193 864 aaKnown RBP9.88□□□□□ -0.83
HDAC1-202ENST00000428704 APOBRQ0VD83 1088 aa9.88□□□□□ -0.83
HDAC1-202ENST00000428704 PUM1Q14671 1186 aaKnown RBP eCLIP9.88□□□□□ -0.834e-7■■■■■ 29.1
HDAC1-202ENST00000428704 CBX2Q14781 532 aaPredicted RBP9.88□□□□□ -0.83
HDAC1-202ENST00000428704 ST3GAL2Q16842 350 aa9.88□□□□□ -0.83
HDAC1-202ENST00000428704 USH1GQ495M9 461 aa9.88□□□□□ -0.83
HDAC1-202ENST00000428704 DUSP28Q4G0W2 176 aa9.88□□□□□ -0.83
HDAC1-202ENST00000428704 ZBTB33Q86T24 672 aa9.88□□□□□ -0.83
HDAC1-202ENST00000428704 CHAMP1Q96JM3 812 aa9.88□□□□□ -0.83
HDAC1-202ENST00000428704 RPGRIP1Q96KN7 1286 aa9.88□□□□□ -0.83
HDAC1-202ENST00000428704 RIPOR3Q96MK2 946 aa9.88□□□□□ -0.83
HDAC1-202ENST00000428704 LY9Q9HBG7 655 aa9.88□□□□□ -0.83
HDAC1-202ENST00000428704 SIP14410 1827 aa9.88□□□□□ -0.83
HDAC1-202ENST00000428704 TANC1Q9C0D5 1861 aa9.87□□□□□ -0.83
HDAC1-202ENST00000428704 PTPDC1A2A3K4 754 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms