RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.04□□□□□ -1.44
VPS13A-207ENST00000419472 MVB12AQ96EY5 273 aa6.04□□□□□ -1.44
VPS13A-207ENST00000419472 NT5C1BQ96P26 610 aa6.04□□□□□ -1.44
VPS13A-207ENST00000419472 QRSL1Q9H0R6 528 aaKnown RBP6.04□□□□□ -1.44
VPS13A-207ENST00000419472 CLEC1BQ9P126 229 aa6.04□□□□□ -1.44
VPS13A-207ENST00000419472 L1RE1Q9UN81 338 aa6.04□□□□□ -1.44
VPS13A-207ENST00000419472 PLXNC1O60486 1568 aa6.04□□□□□ -1.44
VPS13A-207ENST00000419472 ATP7AQ04656 1500 aa6.04□□□□□ -1.44
VPS13A-207ENST00000419472 MADDQ8WXG6 1647 aa6.04□□□□□ -1.44
VPS13A-207ENST00000419472 NCAM2O15394 837 aa6.04□□□□□ -1.44
VPS13A-207ENST00000419472 CD4P01730 458 aa6.04□□□□□ -1.44
VPS13A-207ENST00000419472 CLEC2LP0C7M8 214 aa6.04□□□□□ -1.44
VPS13A-207ENST00000419472 PLS3P13797 630 aa6.04□□□□□ -1.44
VPS13A-207ENST00000419472 PDE6AP16499 860 aa6.04□□□□□ -1.44
VPS13A-207ENST00000419472 NAT1P18440 290 aa6.04□□□□□ -1.44
VPS13A-207ENST00000419472 ALDH6A1Q02252 535 aaKnown RBP6.04□□□□□ -1.44
VPS13A-207ENST00000419472 TNFAIP2Q03169 654 aa6.04□□□□□ -1.44
VPS13A-207ENST00000419472 RNF220Q5VTB9 566 aa6.04□□□□□ -1.44
VPS13A-207ENST00000419472 DARS2Q6PI48 645 aaKnown RBP6.04□□□□□ -1.44
VPS13A-207ENST00000419472 CRTC3Q6UUV7 619 aa6.04□□□□□ -1.44
VPS13A-207ENST00000419472 ARMCX6Q7L4S7 300 aa6.04□□□□□ -1.44
VPS13A-207ENST00000419472 ZSCAN18Q8TBC5 510 aaPredicted RBP6.04□□□□□ -1.44
VPS13A-207ENST00000419472 KCNJ15Q99712 375 aa6.04□□□□□ -1.44
VPS13A-207ENST00000419472 MDFIQ99750 246 aa6.04□□□□□ -1.44
VPS13A-207ENST00000419472 ZDHHC5Q9C0B5 715 aa6.04□□□□□ -1.44
VPS13A-207ENST00000419472 LGR6Q9HBX8 967 aa6.04□□□□□ -1.44
VPS13A-207ENST00000419472 ITM2CQ9NQX7 267 aa6.04□□□□□ -1.44
VPS13A-207ENST00000419472 PCDHGB2Q9Y5G2 931 aa6.04□□□□□ -1.44
VPS13A-207ENST00000419472 A0A087WV62 115 aa6.03□□□□□ -1.44
VPS13A-207ENST00000419472 MEFVO15553 781 aaPredicted RBP6.03□□□□□ -1.44
VPS13A-207ENST00000419472 RRP9O43818 475 aaKnown RBP6.03□□□□□ -1.44
VPS13A-207ENST00000419472 ITIH2P19823 946 aa6.03□□□□□ -1.44
VPS13A-207ENST00000419472 CTSKP43235 329 aa6.03□□□□□ -1.44
VPS13A-207ENST00000419472 CCDC38Q502W7 563 aa6.03□□□□□ -1.44
VPS13A-207ENST00000419472 MBLAC2Q68D91 279 aa6.03□□□□□ -1.44
VPS13A-207ENST00000419472 C8orf86Q6ZUL3 223 aa6.03□□□□□ -1.44
VPS13A-207ENST00000419472 USP45Q70EL2 814 aa6.03□□□□□ -1.44
VPS13A-207ENST00000419472 OSTM1Q86WC4 334 aa6.03□□□□□ -1.44
VPS13A-207ENST00000419472 KIAA0319LQ8IZA0 1049 aa6.03□□□□□ -1.44
VPS13A-207ENST00000419472 KIAA1958Q8N8K9 716 aa6.03□□□□□ -1.44
VPS13A-207ENST00000419472 ZNF496Q96IT1 587 aaPredicted RBP6.03□□□□□ -1.44
VPS13A-207ENST00000419472 CDK5RAP3Q96JB5 506 aa6.03□□□□□ -1.44
VPS13A-207ENST00000419472 TBATAQ96M53 351 aa6.03□□□□□ -1.44
VPS13A-207ENST00000419472 SERINC2Q96SA4 455 aa6.03□□□□□ -1.44
VPS13A-207ENST00000419472 ORAI2Q96SN7 254 aa6.03□□□□□ -1.44
VPS13A-207ENST00000419472 ZFYVE21Q9BQ24 234 aa6.03□□□□□ -1.44
VPS13A-207ENST00000419472 ISCA1Q9BUE6 129 aa6.03□□□□□ -1.44
VPS13A-207ENST00000419472 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.03□□□□□ -1.44
VPS13A-207ENST00000419472 AGO4Q9HCK5 861 aaKnown RBP6.03□□□□□ -1.44
VPS13A-207ENST00000419472 ALG13Q9NP73 1137 aaKnown RBP6.03□□□□□ -1.44
VPS13A-207ENST00000419472 CATSPERZQ9NTU4 200 aa6.03□□□□□ -1.44
VPS13A-207ENST00000419472 CEP131Q9UPN4 1083 aa6.03□□□□□ -1.44
VPS13A-207ENST00000419472 PCDHA2Q9Y5H9 948 aa6.03□□□□□ -1.44
VPS13A-207ENST00000419472 SPO11Q9Y5K1 396 aa6.03□□□□□ -1.44
VPS13A-207ENST00000419472 H3BML4 177 aa6.03□□□□□ -1.44
VPS13A-207ENST00000419472 HIP1RO75146 1068 aa6.03□□□□□ -1.44
VPS13A-207ENST00000419472 IFIT1P09914 478 aaKnown RBP6.03□□□□□ -1.44
VPS13A-207ENST00000419472 TMEM253P0C7T8 217 aa6.03□□□□□ -1.44
VPS13A-207ENST00000419472 BMP4P12644 408 aa6.03□□□□□ -1.44
VPS13A-207ENST00000419472 KRT15P19012 456 aa6.03□□□□□ -1.44
VPS13A-207ENST00000419472 CAPN3P20807 821 aa6.03□□□□□ -1.44
VPS13A-207ENST00000419472 DDIT3P35638 169 aa6.03□□□□□ -1.44
VPS13A-207ENST00000419472 ADKP55263 362 aaKnown RBP6.03□□□□□ -1.44
VPS13A-207ENST00000419472 JAM2P57087 298 aa6.03□□□□□ -1.44
VPS13A-207ENST00000419472 CNN3Q15417 329 aaKnown RBP6.03□□□□□ -1.44
VPS13A-207ENST00000419472 CLEC16AQ2KHT3 1053 aa6.03□□□□□ -1.44
VPS13A-207ENST00000419472 FAM209BQ5JX69 171 aa6.03□□□□□ -1.44
VPS13A-207ENST00000419472 LIX1LQ8IVB5 337 aa6.03□□□□□ -1.44
VPS13A-207ENST00000419472 STK11IPQ8N1F8 1099 aa6.03□□□□□ -1.44
VPS13A-207ENST00000419472 NAXEQ8NCW5 288 aa6.03□□□□□ -1.44
VPS13A-207ENST00000419472 UBASH3BQ8TF42 649 aa6.03□□□□□ -1.44
VPS13A-207ENST00000419472 PPP1R16BQ96T49 567 aa6.03□□□□□ -1.44
VPS13A-207ENST00000419472 SEMA4AQ9H3S1 761 aa6.03□□□□□ -1.44
VPS13A-207ENST00000419472 GGA3Q9NZ52 723 aa6.03□□□□□ -1.44
VPS13A-207ENST00000419472 RIMS1Q86UR5 1692 aaKnown RBP6.03□□□□□ -1.44
VPS13A-207ENST00000419472 SIGLEC1Q9BZZ2 1709 aa6.02□□□□□ -1.45
VPS13A-207ENST00000419472 C2orf71A6NGG8 1288 aa6.02□□□□□ -1.45
VPS13A-207ENST00000419472 RRN3P2A6NIE6 340 aa6.02□□□□□ -1.45
VPS13A-207ENST00000419472 DRD2P14416 443 aa6.02□□□□□ -1.45
VPS13A-207ENST00000419472 NUCB1Q02818 461 aa6.02□□□□□ -1.45
VPS13A-207ENST00000419472 PGS1Q32NB8 556 aa6.02□□□□□ -1.45
VPS13A-207ENST00000419472 ALDH1L2Q3SY69 923 aa6.02□□□□□ -1.45
VPS13A-207ENST00000419472 FAM47CQ5HY64 1035 aa6.02□□□□□ -1.45
VPS13A-207ENST00000419472 ESRP1Q6NXG1 681 aaKnown RBP6.02□□□□□ -1.45
VPS13A-207ENST00000419472 OTOP1Q7RTM1 612 aa6.02□□□□□ -1.45
VPS13A-207ENST00000419472 FAM26EQ8N5C1 309 aa6.02□□□□□ -1.45
VPS13A-207ENST00000419472 TRIM63Q969Q1 353 aa6.02□□□□□ -1.45
VPS13A-207ENST00000419472 ZMAT4Q9H898 229 aa6.02□□□□□ -1.45
VPS13A-207ENST00000419472 SMURF1Q9HCE7 757 aa6.02□□□□□ -1.45
VPS13A-207ENST00000419472 CNTLNQ9NXG0 1405 aa6.02□□□□□ -1.45
VPS13A-207ENST00000419472 YEATS2Q9ULM3 1422 aa6.02□□□□□ -1.45
VPS13A-207ENST00000419472 CAMSAP2Q08AD1 1489 aa6.02□□□□□ -1.45
VPS13A-207ENST00000419472 CCDC141Q6ZP82 1450 aa6.02□□□□□ -1.45
VPS13A-207ENST00000419472 EIF2AK4Q9P2K8 1649 aaKnown RBP6.02□□□□□ -1.45
VPS13A-207ENST00000419472 CROCC2H7BZ55 1655 aa6.02□□□□□ -1.45
VPS13A-207ENST00000419472 H7C1D1 291 aa6.02□□□□□ -1.45
VPS13A-207ENST00000419472 RNGTTO60942 597 aaKnown RBP6.02□□□□□ -1.45
VPS13A-207ENST00000419472 PRAMEF1O95521 474 aa6.02□□□□□ -1.45
VPS13A-207ENST00000419472 LTBRP36941 435 aa6.02□□□□□ -1.45
VPS13A-207ENST00000419472 MTNR1BP49286 362 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms