RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 PPP2R2AP63151 447 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 DDB1Q16531 1140 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 CCDC40Q4G0X9 1142 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 PREPLQ4J6C6 727 aaPredicted RBP6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 TDRD12Q587J7 1177 aaKnown RBP6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 TNFAIP8L3Q5GJ75 292 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 GPATCH4Q5T3I0 446 aaKnown RBP6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 ZNF804AQ7Z570 1209 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 SLFN12Q8IYM2 578 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 SLC30A5Q8TAD4 765 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 SCFD1Q8WVM8 642 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 TBC1D5Q92609 795 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 TATDN2Q93075 761 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 CYFIP2Q96F07 1278 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 GDAP1L1Q96MZ0 367 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 KRT12Q99456 494 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 LSM14BQ9BX40 385 aaKnown RBP6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 RAB17Q9H0T7 212 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 TRAF5O00463 557 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 ASAP2O43150 1006 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 FERP16591 822 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 CXCR5P32302 372 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 MRPL12P52815 198 aaKnown RBP6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 SLC12A3P55017 1021 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 PTENP60484 403 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 POLR2FP61218 127 aaKnown RBP6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 AP3B2Q13367 1082 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 RIPK1Q13546 671 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 DHX34Q14147 1143 aaKnown RBP6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 ITIH4Q14624 930 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 BTNL9Q6UXG8 535 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 TMC3Q7Z5M5 1100 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 VPS36Q86VN1 386 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 TBC1D22AQ8WUA7 517 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 CUL5Q93034 780 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 DYNLL2Q96FJ2 89 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 MS4A14Q96JA4 679 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 RUNDC3BQ96NL0 473 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 PIGSQ96S52 555 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 EHD4Q9H223 541 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 CARD9Q9H257 536 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 PLEKHA4Q9H4M7 779 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 EMILIN3Q9NT22 766 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 MTMR4Q9NYA4 1195 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 USP20Q9Y2K6 914 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 ZBTB12Q9Y330 459 aaPredicted RBP6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 SPATA31A5Q5VU36 1347 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 SPATA31A7Q8IWB4 1347 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 SPDYE2BA6NHP3 402 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 EIF3DO15371 548 aaKnown RBP eCLIP6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 BUB1O43683 1085 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 RPS6KA4O75676 772 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 GGPS1O95749 300 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 AFPP02771 609 aaKnown RBP6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 TMEM253P0C7T8 217 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 SPDYE6P0CI01 402 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 UCHL3P15374 230 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 CYP11B2P19099 503 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 MMP14P50281 582 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 RHBDL3P58872 404 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 GUCY1A3Q02108 690 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 PPATQ06203 517 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 ZNF543Q08ER8 600 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 KCNH2Q12809 1159 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 BYSLQ13895 437 aaKnown RBP6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 MYBPC2Q14324 1141 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 EPHA7Q15375 998 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 SPDYE2Q495Y8 402 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 CRELD2Q6UXH1 353 aaPredicted RBP6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 KCNK18Q7Z418 384 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 NT5DC3Q86UY8 548 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 HOOK3Q86VS8 718 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 CCDC13Q8IYE1 715 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 MARCH10Q8NA82 808 aaPredicted RBP6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 OLIG1Q8TAK6 271 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 CERKQ8TCT0 537 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 MORC4Q8TE76 937 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 BORCS6Q96GS4 357 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 PLIN2Q99541 437 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 SIX2Q9NPC8 291 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 OLFML3Q9NRN5 406 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 CAPN7Q9Y6W3 813 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 FRMPD4Q14CM0 1322 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 PSME4Q14997 1843 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 MYO1FO00160 1098 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 CALUO43852 315 aaPredicted RBP6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 LMNB1P20700 586 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 RPL13P26373 211 aaKnown RBP6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 PON1P27169 355 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 PTK2Q05397 1052 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 GRAPQ13588 217 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 KNOP1Q1ED39 458 aaKnown RBP6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 Q4G0T1 1027 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 CEP85LQ5SZL2 805 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 ERMARDQ5T6L9 678 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 TPTE2Q6XPS3 522 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 METTL13Q8N6R0 699 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 SYT2Q8N9I0 419 aaPredicted RBP6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 GRAPLQ8TC17 118 aaPredicted RBP6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 HPS3Q969F9 1004 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms