RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 TTLL11Q8NHH1 800 aa10.05□□□□□ -0.8
COL28A1-201ENST00000399429 LARP4BQ92615 738 aaKnown RBP10.05□□□□□ -0.8
COL28A1-201ENST00000399429 ANKS1AQ92625 1134 aa10.05□□□□□ -0.8
COL28A1-201ENST00000399429 OPTNQ96CV9 577 aa10.05□□□□□ -0.8
COL28A1-201ENST00000399429 CCDC87Q9NVE4 849 aa10.05□□□□□ -0.8
COL28A1-201ENST00000399429 XDHP47989 1333 aa10.05□□□□□ -0.8
COL28A1-201ENST00000399429 ATXN2Q99700 1313 aaKnown RBP10.05□□□□□ -0.8
COL28A1-201ENST00000399429 A0A087X0B3 334 aa10.05□□□□□ -0.8
COL28A1-201ENST00000399429 A8MUI8 341 aa10.05□□□□□ -0.8
COL28A1-201ENST00000399429 TOM1O60784 492 aa10.05□□□□□ -0.8
COL28A1-201ENST00000399429 ECEL1O95672 775 aa10.05□□□□□ -0.8
COL28A1-201ENST00000399429 NR2F2P24468 414 aa10.05□□□□□ -0.8
COL28A1-201ENST00000399429 PMS1P54277 932 aaKnown RBP10.05□□□□□ -0.8
COL28A1-201ENST00000399429 KLHDC7AQ5VTJ3 777 aa10.05□□□□□ -0.8
COL28A1-201ENST00000399429 OSCARQ8IYS5 282 aa10.05□□□□□ -0.8
COL28A1-201ENST00000399429 AGGF1Q8N302 714 aaeCLIP10.05□□□□□ -0.8
COL28A1-201ENST00000399429 IGDCC4Q8TDY8 1250 aa10.05□□□□□ -0.8
COL28A1-201ENST00000399429 EPS8L3Q8TE67 593 aaKnown RBP10.05□□□□□ -0.8
COL28A1-201ENST00000399429 PRPF31Q8WWY3 499 aaKnown RBP10.05□□□□□ -0.8
COL28A1-201ENST00000399429 LPIN2Q92539 896 aa10.05□□□□□ -0.8
COL28A1-201ENST00000399429 KAZALD1Q96I82 304 aa10.05□□□□□ -0.8
COL28A1-201ENST00000399429 CEP72Q9P209 647 aa10.05□□□□□ -0.8
COL28A1-201ENST00000399429 TRIM33Q9UPN9 1127 aa10.05□□□□□ -0.8
COL28A1-201ENST00000399429 DPPA5A6NC42 116 aa10.04□□□□□ -0.8
COL28A1-201ENST00000399429 GOLGA8HP0CJ92 632 aa10.04□□□□□ -0.8
COL28A1-201ENST00000399429 CACNA2D1P54289 1103 aa10.04□□□□□ -0.8
COL28A1-201ENST00000399429 ATP2C1P98194 919 aaPredicted RBP10.04□□□□□ -0.8
COL28A1-201ENST00000399429 RCN1Q15293 331 aa10.04□□□□□ -0.8
COL28A1-201ENST00000399429 EAPPQ56P03 285 aaPredicted RBP10.04□□□□□ -0.8
COL28A1-201ENST00000399429 WDR59Q6PJI9 974 aa10.04□□□□□ -0.8
COL28A1-201ENST00000399429 MYLK4Q86YV6 388 aaPredicted RBP10.04□□□□□ -0.8
COL28A1-201ENST00000399429 SYT2Q8N9I0 419 aaPredicted RBP10.04□□□□□ -0.8
COL28A1-201ENST00000399429 KLHL23Q8NBE8 558 aa10.04□□□□□ -0.8
COL28A1-201ENST00000399429 ZNF287Q9HBT7 754 aa10.04□□□□□ -0.8
COL28A1-201ENST00000399429 PIH1D3Q9NQM4 214 aaKnown RBP10.04□□□□□ -0.8
COL28A1-201ENST00000399429 HDAC9Q9UKV0 1011 aa10.04□□□□□ -0.8
COL28A1-201ENST00000399429 CYP2D7A0A087X1C5 515 aa10.04□□□□□ -0.8
COL28A1-201ENST00000399429 EXOC1LA0A1B0GW35 172 aa10.04□□□□□ -0.8
COL28A1-201ENST00000399429 KLHL33A6NCF5 533 aa10.04□□□□□ -0.8
COL28A1-201ENST00000399429 SMCO2A6NFE2 343 aa10.04□□□□□ -0.8
COL28A1-201ENST00000399429 PRPF3O43395 683 aaKnown RBP10.04□□□□□ -0.8
COL28A1-201ENST00000399429 MYL1P05976 194 aa10.04□□□□□ -0.8
COL28A1-201ENST00000399429 IFI35P80217 286 aaPredicted RBP10.04□□□□□ -0.8
COL28A1-201ENST00000399429 SGMS1Q86VZ5 419 aa10.04□□□□□ -0.8
COL28A1-201ENST00000399429 DNAAF5Q86Y56 855 aa10.04□□□□□ -0.8
COL28A1-201ENST00000399429 TMEM237Q96Q45 408 aa10.04□□□□□ -0.8
COL28A1-201ENST00000399429 SLC52A2Q9HAB3 445 aa10.04□□□□□ -0.8
COL28A1-201ENST00000399429 I3L4J1 428 aa10.04□□□□□ -0.8
COL28A1-201ENST00000399429 LRRN2O75325 713 aa10.04□□□□□ -0.8
COL28A1-201ENST00000399429 VHLP40337 213 aa10.04□□□□□ -0.8
COL28A1-201ENST00000399429 MCAMP43121 646 aa10.04□□□□□ -0.8
COL28A1-201ENST00000399429 MYOM1P52179 1685 aa10.04□□□□□ -0.8
COL28A1-201ENST00000399429 CHRNA2Q15822 529 aa10.04□□□□□ -0.8
COL28A1-201ENST00000399429 SLC18A3Q16572 532 aa10.04□□□□□ -0.8
COL28A1-201ENST00000399429 KRT25Q7Z3Z0 450 aa10.04□□□□□ -0.8
COL28A1-201ENST00000399429 MAGEC3Q8TD91 643 aa10.04□□□□□ -0.8
COL28A1-201ENST00000399429 STRBPQ96SI9 672 aaKnown RBP10.04□□□□□ -0.8
COL28A1-201ENST00000399429 SPZ1Q9BXG8 430 aa10.04□□□□□ -0.8
COL28A1-201ENST00000399429 CARD9Q9H257 536 aa10.04□□□□□ -0.8
COL28A1-201ENST00000399429 GDF3Q9NR23 364 aa10.04□□□□□ -0.8
COL28A1-201ENST00000399429 USTQ9Y2C2 406 aa10.04□□□□□ -0.8
COL28A1-201ENST00000399429 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.04□□□□□ -0.8
COL28A1-201ENST00000399429 CAPN9O14815 690 aa10.04□□□□□ -0.8
COL28A1-201ENST00000399429 MGRN1O60291 552 aa10.04□□□□□ -0.8
COL28A1-201ENST00000399429 DKC1O60832 514 aaKnown RBP eCLIP10.04□□□□□ -0.8
COL28A1-201ENST00000399429 KRT16P08779 473 aa10.04□□□□□ -0.8
COL28A1-201ENST00000399429 DRD4P21917 467 aa10.04□□□□□ -0.8
COL28A1-201ENST00000399429 SPARCL1Q14515 664 aa10.04□□□□□ -0.8
COL28A1-201ENST00000399429 PUM3Q15397 648 aaKnown RBP10.04□□□□□ -0.8
COL28A1-201ENST00000399429 SGO2Q562F6 1265 aa10.04□□□□□ -0.8
COL28A1-201ENST00000399429 KIAA1755Q5JYT7 1200 aa10.04□□□□□ -0.8
COL28A1-201ENST00000399429 ARL6IP4Q66PJ3 421 aaKnown RBP10.04□□□□□ -0.8
COL28A1-201ENST00000399429 CNBD1Q8NA66 436 aa10.04□□□□□ -0.8
COL28A1-201ENST00000399429 BICD1Q96G01 975 aa10.04□□□□□ -0.8
COL28A1-201ENST00000399429 TMOD4Q9NZQ9 345 aa10.04□□□□□ -0.8
COL28A1-201ENST00000399429 ANAPC5Q9UJX4 755 aa10.04□□□□□ -0.8
COL28A1-201ENST00000399429 CPDO75976 1380 aa10.03□□□□□ -0.8
COL28A1-201ENST00000399429 RFX7Q2KHR2 1363 aa10.03□□□□□ -0.8
COL28A1-201ENST00000399429 IRF6O14896 467 aa10.03□□□□□ -0.8
COL28A1-201ENST00000399429 CASQ2O14958 399 aaPredicted RBP10.03□□□□□ -0.8
COL28A1-201ENST00000399429 ATP9AO75110 1047 aa10.03□□□□□ -0.8
COL28A1-201ENST00000399429 GCNT3O95395 438 aa10.03□□□□□ -0.8
COL28A1-201ENST00000399429 SHBGP04278 402 aa10.03□□□□□ -0.8
COL28A1-201ENST00000399429 KCNMA1Q12791 1236 aa10.03□□□□□ -0.8
COL28A1-201ENST00000399429 HP1BP3Q5SSJ5 553 aaPredicted RBP10.03□□□□□ -0.8
COL28A1-201ENST00000399429 CWF19L1Q69YN2 538 aaKnown RBP10.03□□□□□ -0.8
COL28A1-201ENST00000399429 BARGINQ6ZT62 677 aa10.03□□□□□ -0.8
COL28A1-201ENST00000399429 GORASP1Q9BQQ3 440 aa10.03□□□□□ -0.8
COL28A1-201ENST00000399429 PACSIN1Q9BY11 444 aa10.03□□□□□ -0.8
COL28A1-201ENST00000399429 TMEM60Q9H2L4 133 aa10.03□□□□□ -0.8
COL28A1-201ENST00000399429 TYW1Q9NV66 732 aaKnown RBP10.03□□□□□ -0.8
COL28A1-201ENST00000399429 ASAP2O43150 1006 aa10.03□□□□□ -0.8
COL28A1-201ENST00000399429 HAUS5O94927 633 aa10.03□□□□□ -0.8
COL28A1-201ENST00000399429 FAM13AO94988 1023 aa10.03□□□□□ -0.8
COL28A1-201ENST00000399429 STAMBPO95630 424 aa10.03□□□□□ -0.8
COL28A1-201ENST00000399429 MARK3P27448 753 aa10.03□□□□□ -0.8
COL28A1-201ENST00000399429 RNASELQ05823 741 aaKnown RBP10.03□□□□□ -0.8
COL28A1-201ENST00000399429 DNAJC3Q13217 504 aa10.03□□□□□ -0.8
COL28A1-201ENST00000399429 NAB2Q15742 525 aa10.03□□□□□ -0.8
COL28A1-201ENST00000399429 RNF220Q5VTB9 566 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms