RNA–Protein interactions for RNA: ENST00000397606.7

PTPRD-204, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 5,038 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-204ENST00000397606 SPEF2Q9C093 1822 aa9.06□□□□□ -0.96
PTPRD-204ENST00000397606 ATRNL1Q5VV63 1379 aa9.06□□□□□ -0.96
PTPRD-204ENST00000397606 ARHGAP6O43182 974 aa9.06□□□□□ -0.96
PTPRD-204ENST00000397606 AFPP02771 609 aaKnown RBP9.06□□□□□ -0.96
PTPRD-204ENST00000397606 SLURP2P0DP57 97 aa9.06□□□□□ -0.96
PTPRD-204ENST00000397606 CDC42EP1Q00587 391 aa9.06□□□□□ -0.96
PTPRD-204ENST00000397606 ARHGAP44Q17R89 818 aa9.06□□□□□ -0.96
PTPRD-204ENST00000397606 SH3BP5LQ7L8J4 393 aa9.06□□□□□ -0.96
PTPRD-204ENST00000397606 FAM81BQ96LP2 452 aa9.06□□□□□ -0.96
PTPRD-204ENST00000397606 GMLQ99445 158 aa9.06□□□□□ -0.96
PTPRD-204ENST00000397606 CCDC94Q9BW85 323 aaPredicted RBP9.06□□□□□ -0.96
PTPRD-204ENST00000397606 TRIM9Q9C026 710 aa9.06□□□□□ -0.96
PTPRD-204ENST00000397606 MKRN1Q9UHC7 482 aaKnown RBP9.06□□□□□ -0.96
PTPRD-204ENST00000397606 DUOX1Q9NRD9 1551 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 A0A1W2PRG0 241 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 RARBP10826 455 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 MYL7Q01449 175 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 LRMPQ12912 555 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 Q4G0T1 1027 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 NAALADL2Q58DX5 795 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 LIN9Q5TKA1 542 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 GUF1Q8N442 669 aaKnown RBP9.05□□□□□ -0.96
PTPRD-204ENST00000397606 CTNNBL1Q8WYA6 563 aaPredicted RBP9.05□□□□□ -0.96
PTPRD-204ENST00000397606 FERMT1Q9BQL6 677 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 POLR3CQ9BUI4 534 aaPredicted RBP9.05□□□□□ -0.96
PTPRD-204ENST00000397606 MSTO1Q9BUK6 570 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 PCIF1Q9H4Z3 704 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 ZNF233A6NK53 670 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 TLR3O15455 904 aaKnown RBP9.05□□□□□ -0.96
PTPRD-204ENST00000397606 MAGEB2O15479 319 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 SLC37A4O43826 429 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 PGK2P07205 417 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 ERVK-9P63128 1117 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 ERVK-24P63145 666 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 SELENOOQ9BVL4 669 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 APOL6Q9BWW8 343 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 POLR3FQ9H1D9 316 aaPredicted RBP9.05□□□□□ -0.96
PTPRD-204ENST00000397606 ERAP1Q9NZ08 941 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 PARP2Q9UGN5 583 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 NRAPQ86VF7 1730 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 FOXP2O15409 715 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 ST3GAL1Q11201 340 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 NOGQ13253 232 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 NOLC1Q14978 699 aaKnown RBP eCLIP9.05□□□□□ -0.96
PTPRD-204ENST00000397606 CCDC122Q5T0U0 273 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 MOB2Q70IA6 237 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 CRACR2AQ9BSW2 395 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 TMX1Q9H3N1 280 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 GUCA1BQ9UMX6 200 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 DENND3A2RUS2 1198 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 CLDN3O15551 220 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 TGFB3P10600 412 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 CYP2C8P10632 490 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 MUTP22033 750 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 CASP1P29466 404 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 EFNA5P52803 228 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 TNFAIP2Q03169 654 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 NFX1Q12986 1120 aaKnown RBP9.05□□□□□ -0.96
PTPRD-204ENST00000397606 PTPAQ15257 358 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 DGKDQ16760 1214 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 RHPN2Q8IUC4 686 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 RIOX2Q8IUF8 465 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 PPM1KQ8N3J5 372 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 NT5C1BQ96P26 610 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 ANKEF1Q9NU02 776 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 NUP188Q5SRE5 1749 aa9.05□□□□□ -0.96
PTPRD-204ENST00000397606 SLC16A4O15374 487 aa9.04□□□□□ -0.96
PTPRD-204ENST00000397606 HIP1RO75146 1068 aa9.04□□□□□ -0.96
PTPRD-204ENST00000397606 USP2O75604 605 aaPredicted RBP9.04□□□□□ -0.96
PTPRD-204ENST00000397606 RFC5P40937 340 aa9.04□□□□□ -0.96
PTPRD-204ENST00000397606 PIK3CAP42336 1068 aa9.04□□□□□ -0.96
PTPRD-204ENST00000397606 TNNT3P45378 269 aaPredicted RBP9.04□□□□□ -0.96
PTPRD-204ENST00000397606 CPT1AP50416 773 aa9.04□□□□□ -0.96
PTPRD-204ENST00000397606 PPFIA1Q13136 1202 aa9.04□□□□□ -0.96
PTPRD-204ENST00000397606 KNOP1Q1ED39 458 aaKnown RBP9.04□□□□□ -0.96
PTPRD-204ENST00000397606 DEFB115Q30KQ5 88 aa9.04□□□□□ -0.96
PTPRD-204ENST00000397606 AXDND1Q5T1B0 1012 aaPredicted RBP9.04□□□□□ -0.96
PTPRD-204ENST00000397606 INTS8Q75QN2 995 aaKnown RBP9.04□□□□□ -0.96
PTPRD-204ENST00000397606 CEP63Q96MT8 703 aa9.04□□□□□ -0.96
PTPRD-204ENST00000397606 PPP1R16BQ96T49 567 aa9.04□□□□□ -0.96
PTPRD-204ENST00000397606 GCOM2Q9BZD3 368 aaPredicted RBP9.04□□□□□ -0.96
PTPRD-204ENST00000397606 LZTFL1Q9NQ48 299 aa9.04□□□□□ -0.96
PTPRD-204ENST00000397606 LRFN2Q9ULH4 789 aa9.04□□□□□ -0.96
PTPRD-204ENST00000397606 PAXBP1Q9Y5B6 917 aa9.04□□□□□ -0.96
PTPRD-204ENST00000397606 GOLGA6L10A0A0M3HER8 536 aa9.04□□□□□ -0.96
PTPRD-204ENST00000397606 COBLO75128 1261 aa9.04□□□□□ -0.96
PTPRD-204ENST00000397606 PRKCEQ02156 737 aa9.04□□□□□ -0.96
PTPRD-204ENST00000397606 XXYLT1Q8NBI6 393 aa9.04□□□□□ -0.96
PTPRD-204ENST00000397606 SOCS4Q8WXH5 440 aa9.04□□□□□ -0.96
PTPRD-204ENST00000397606 WNK4Q96J92 1243 aa9.04□□□□□ -0.96
PTPRD-204ENST00000397606 MMS19Q96T76 1030 aa9.04□□□□□ -0.96
PTPRD-204ENST00000397606 C7orf25Q9BPX7 421 aa9.04□□□□□ -0.96
PTPRD-204ENST00000397606 RPF1Q9H9Y2 349 aaKnown RBP9.04□□□□□ -0.96
PTPRD-204ENST00000397606 TYW1Q9NV66 732 aaKnown RBP9.04□□□□□ -0.96
PTPRD-204ENST00000397606 NUB1Q9Y5A7 615 aa9.04□□□□□ -0.96
PTPRD-204ENST00000397606 ASTN2O75129 1339 aaPredicted RBP9.04□□□□□ -0.96
PTPRD-204ENST00000397606 ACTR2P61160 394 aa9.04□□□□□ -0.96
PTPRD-204ENST00000397606 MXD4Q14582 209 aaPredicted RBP9.04□□□□□ -0.96
PTPRD-204ENST00000397606 NIPA1Q7RTP0 329 aa9.04□□□□□ -0.96
PTPRD-204ENST00000397606 ZBTB33Q86T24 672 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms