RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 SERPINI1Q99574 410 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 RANBP17Q9H2T7 1088 aaKnown RBP4.97□□□□□ -1.61
SCN1A-202ENST00000375405 RAB20Q9NX57 234 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 ARIH1Q9Y4X5 557 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-202ENST00000375405 TRIM75PA6NK02 468 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 SGK1O00141 431 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 TRIM13O60858 407 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 XRCC5P13010 732 aaKnown RBP4.97□□□□□ -1.61
SCN1A-202ENST00000375405 SERPINB4P48594 390 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 GSDMDP57764 484 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 FCHO2Q0JRZ9 810 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 RTN1Q16799 776 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 GTF2IRD2BQ6EKJ0 949 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 GTF2IRD2Q86UP8 949 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 ANKFN1Q8N957 763 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 TNIP2Q8NFZ5 429 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 TRIM2Q9C040 744 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 HOMER3Q9NSC5 361 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 COMMD9Q9P000 198 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 ANAPC7Q9UJX3 599 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 DMTF1Q9Y222 760 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 V9GY48 417 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-202ENST00000375405 UACAQ9BZF9 1416 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 RTL1A6NKG5 1358 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 GUCY1B2O75343 617 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 MFN2O95140 757 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 NUDT14O95848 222 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 ERVK-10P10266 1014 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 LIG4P49917 911 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 CLCN6P51797 869 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 ADKP55263 362 aaKnown RBP4.97□□□□□ -1.61
SCN1A-202ENST00000375405 SCRN3Q0VDG4 424 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 BEND3Q5T5X7 828 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 MSANTD1Q6ZTZ1 278 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 ENGASEQ8NFI3 743 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 NEK7Q8TDX7 302 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 SLC9A6Q92581 669 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 SECISBP2LQ93073 1101 aaKnown RBP4.97□□□□□ -1.61
SCN1A-202ENST00000375405 CNPPD1Q9BV87 410 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 ING3Q9NXR8 418 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 DNAI1Q9UI46 699 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 SLC25A13Q9UJS0 675 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 CHMP2BQ9UQN3 213 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 TBX3O15119 743 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 GABPB1Q06547 395 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-202ENST00000375405 ARMC4Q5T2S8 1044 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 SYTL1Q8IYJ3 562 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 RTL3Q8N8U3 475 aaKnown RBP4.97□□□□□ -1.61
SCN1A-202ENST00000375405 ICA1LQ8NDH6 482 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 JADE3Q92613 823 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 PRRG4Q9BZD6 226 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 RPF1Q9H9Y2 349 aaKnown RBP4.97□□□□□ -1.61
SCN1A-202ENST00000375405 ELL3Q9HB65 397 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-202ENST00000375405 COPG2Q9UBF2 871 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 TDRD9Q8NDG6 1382 aaKnown RBP4.96□□□□□ -1.61
SCN1A-202ENST00000375405 BCRP11274 1271 aa4.96□□□□□ -1.61
SCN1A-202ENST00000375405 CSNK2BP67870 215 aa4.96□□□□□ -1.61
SCN1A-202ENST00000375405 SPDYAQ5MJ70 313 aa4.96□□□□□ -1.61
SCN1A-202ENST00000375405 ALS2CLQ60I27 953 aa4.96□□□□□ -1.61
SCN1A-202ENST00000375405 BRINP3Q76B58 766 aa4.96□□□□□ -1.61
SCN1A-202ENST00000375405 SCN4BQ8IWT1 228 aa4.96□□□□□ -1.61
SCN1A-202ENST00000375405 JARID2Q92833 1246 aaPredicted RBP4.96□□□□□ -1.61
SCN1A-202ENST00000375405 MTERF3Q96E29 417 aa4.96□□□□□ -1.61
SCN1A-202ENST00000375405 IFNKQ9P0W0 207 aa4.96□□□□□ -1.61
SCN1A-202ENST00000375405 SUN2Q9UH99 717 aa4.96□□□□□ -1.61
SCN1A-202ENST00000375405 SNX5Q9Y5X3 404 aa4.96□□□□□ -1.61
SCN1A-202ENST00000375405 ZNF644Q9H582 1327 aaPredicted RBP4.96□□□□□ -1.61
SCN1A-202ENST00000375405 CFBP00751 764 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 EIF2S1P05198 315 aaKnown RBP4.96□□□□□ -1.62
SCN1A-202ENST00000375405 PAX7P23759 505 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 PIK3CAP42336 1068 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 PDX1P52945 283 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 ST8SIA6P61647 398 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 PABPC4Q13310 644 aaKnown RBP eCLIP4.96□□□□□ -1.62
SCN1A-202ENST00000375405 KYNUQ16719 465 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 CEP55Q53EZ4 464 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 RNF19BQ6ZMZ0 732 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 TMTC3Q6ZXV5 915 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 CHSY1Q86X52 802 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 LRRC49Q8IUZ0 686 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 SMC5Q8IY18 1101 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 CCDC54Q8NEL0 328 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 E2F7Q96AV8 911 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 SIKE1Q9BRV8 207 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 MLPHQ9BV36 600 aaPredicted RBP4.96□□□□□ -1.62
SCN1A-202ENST00000375405 TRIM15Q9C019 465 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 DHX36Q9H2U1 1008 aaKnown RBP4.96□□□□□ -1.62
SCN1A-202ENST00000375405 INTS10Q9NVR2 710 aaKnown RBP4.96□□□□□ -1.62
SCN1A-202ENST00000375405 SYBUQ9NX95 663 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 DYTNA2CJ06 578 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 B2RBV5 119 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 H0YIN7 160 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 GOLGA8SH3BPF8 625 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 PIK3CDO00329 1044 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 DLATP10515 647 aaKnown RBP4.96□□□□□ -1.62
SCN1A-202ENST00000375405 GHRP10912 638 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 SARSP49591 514 aaKnown RBP4.96□□□□□ -1.62
SCN1A-202ENST00000375405 YWHAGP61981 247 aaKnown RBP eCLIP4.96□□□□□ -1.62
SCN1A-202ENST00000375405 SPATA2Q9UM82 520 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 RTCBQ9Y3I0 505 aaKnown RBP4.96□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms