RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 TTI1O43156 1089 aa17.89■□□□□ 0.46
SDC4-201ENST00000372733 MED24O75448 989 aa17.89■□□□□ 0.46
SDC4-201ENST00000372733 SNHG28P0DPA3 235 aa17.89■□□□□ 0.46
SDC4-201ENST00000372733 PON1P27169 355 aa17.89■□□□□ 0.46
SDC4-201ENST00000372733 PICALMQ13492 652 aa17.89■□□□□ 0.46
SDC4-201ENST00000372733 IFI16Q16666 785 aaKnown RBP17.89■□□□□ 0.46
SDC4-201ENST00000372733 EXOC3L4Q17RC7 722 aa17.89■□□□□ 0.46
SDC4-201ENST00000372733 EDRF1Q3B7T1 1238 aa17.89■□□□□ 0.46
SDC4-201ENST00000372733 PTF1AQ7RTS3 328 aa17.89■□□□□ 0.46
SDC4-201ENST00000372733 CD248Q9HCU0 757 aa17.89■□□□□ 0.46
SDC4-201ENST00000372733 DDX20Q9UHI6 824 aaKnown RBP17.89■□□□□ 0.46
SDC4-201ENST00000372733 GMNCA6NCL1 334 aa17.89■□□□□ 0.45
SDC4-201ENST00000372733 SRRM3A6NNA2 597 aaPredicted RBP17.89■□□□□ 0.45
SDC4-201ENST00000372733 GNPATO15228 680 aa17.89■□□□□ 0.45
SDC4-201ENST00000372733 AFPP02771 609 aaKnown RBP17.89■□□□□ 0.45
SDC4-201ENST00000372733 RFC4P35249 363 aa17.89■□□□□ 0.45
SDC4-201ENST00000372733 ZNF543Q08ER8 600 aa17.89■□□□□ 0.45
SDC4-201ENST00000372733 GRAPQ13588 217 aa17.89■□□□□ 0.45
SDC4-201ENST00000372733 ODF2Q5BJF6 829 aa17.89■□□□□ 0.45
SDC4-201ENST00000372733 C10orf76Q5T2E6 689 aa17.89■□□□□ 0.45
SDC4-201ENST00000372733 PPP1R18Q6NYC8 613 aa17.89■□□□□ 0.45
SDC4-201ENST00000372733 GJB7Q6PEY0 223 aa17.89■□□□□ 0.45
SDC4-201ENST00000372733 GRAPLQ8TC17 118 aaPredicted RBP17.89■□□□□ 0.45
SDC4-201ENST00000372733 DPH5Q9H2P9 285 aa17.89■□□□□ 0.45
SDC4-201ENST00000372733 NOVA2Q9UNW9 492 aaKnown RBP17.89■□□□□ 0.45
SDC4-201ENST00000372733 THRAP3Q9Y2W1 955 aaKnown RBP17.89■□□□□ 0.45
SDC4-201ENST00000372733 TRAPPC3O43617 180 aa17.88■□□□□ 0.45
SDC4-201ENST00000372733 TMC3Q7Z5M5 1100 aa17.88■□□□□ 0.45
SDC4-201ENST00000372733 CD209Q9NNX6 404 aa17.88■□□□□ 0.45
SDC4-201ENST00000372733 ARFGEF1Q9Y6D6 1849 aa17.88■□□□□ 0.45
SDC4-201ENST00000372733 LOC102724159A0A0B4J2E5 919 aa17.88■□□□□ 0.45
SDC4-201ENST00000372733 USP17L15C9J2P7 530 aa17.88■□□□□ 0.45
SDC4-201ENST00000372733 USP17L10C9JJH3 530 aa17.88■□□□□ 0.45
SDC4-201ENST00000372733 USP17L13C9JLJ4 530 aa17.88■□□□□ 0.45
SDC4-201ENST00000372733 USP17L11C9JVI0 530 aa17.88■□□□□ 0.45
SDC4-201ENST00000372733 USP17L18D6R9N7 530 aa17.88■□□□□ 0.45
SDC4-201ENST00000372733 USP17L22D6RA61 530 aa17.88■□□□□ 0.45
SDC4-201ENST00000372733 USP17L17D6RBQ6 530 aa17.88■□□□□ 0.45
SDC4-201ENST00000372733 USP17L19D6RCP7 530 aa17.88■□□□□ 0.45
SDC4-201ENST00000372733 USP17L20D6RJB6 530 aa17.88■□□□□ 0.45
SDC4-201ENST00000372733 GCFC2P16383 781 aaKnown RBP17.88■□□□□ 0.45
SDC4-201ENST00000372733 HOXD13P35453 343 aa17.88■□□□□ 0.45
SDC4-201ENST00000372733 PPP2R2AP63151 447 aa17.88■□□□□ 0.45
SDC4-201ENST00000372733 SETQ01105 290 aaPredicted RBP17.88■□□□□ 0.45
SDC4-201ENST00000372733 USP17L24Q0WX57 530 aa17.88■□□□□ 0.45
SDC4-201ENST00000372733 BIRC3Q13489 604 aa17.88■□□□□ 0.45
SDC4-201ENST00000372733 PWP2Q15269 919 aaKnown RBP17.88■□□□□ 0.45
SDC4-201ENST00000372733 TCERG1LQ5VWI1 586 aa17.88■□□□□ 0.45
SDC4-201ENST00000372733 USP17L6PQ6QN14 398 aa17.88■□□□□ 0.45
SDC4-201ENST00000372733 PPP4R3CPQ6ZMV5 832 aa17.88■□□□□ 0.45
SDC4-201ENST00000372733 RUFY4Q6ZNE9 571 aa17.88■□□□□ 0.45
SDC4-201ENST00000372733 CCDC121Q6ZUS5 278 aa17.88■□□□□ 0.45
SDC4-201ENST00000372733 SFR1Q86XK3 245 aa17.88■□□□□ 0.45
SDC4-201ENST00000372733 JPH2Q9BR39 696 aaPredicted RBP17.88■□□□□ 0.45
SDC4-201ENST00000372733 DHX36Q9H2U1 1008 aaKnown RBP17.88■□□□□ 0.45
SDC4-201ENST00000372733 GGA2Q9UJY4 613 aa17.88■□□□□ 0.45
SDC4-201ENST00000372733 PLIN4Q96Q06 1357 aa17.88■□□□□ 0.45
SDC4-201ENST00000372733 FRMD3A2A2Y4 597 aa17.87■□□□□ 0.45
SDC4-201ENST00000372733 FLOT1O75955 427 aa17.87■□□□□ 0.45
SDC4-201ENST00000372733 PLCG2P16885 1265 aa17.87■□□□□ 0.45
SDC4-201ENST00000372733 SLC12A3P55017 1021 aa17.87■□□□□ 0.45
SDC4-201ENST00000372733 MAGOHP61326 146 aaKnown RBP17.87■□□□□ 0.45
SDC4-201ENST00000372733 MAGOHBQ96A72 148 aaKnown RBP17.87■□□□□ 0.45
SDC4-201ENST00000372733 TRIM51Q9BSJ1 452 aa17.87■□□□□ 0.45
SDC4-201ENST00000372733 TRIM31Q9BZY9 425 aa17.87■□□□□ 0.45
SDC4-201ENST00000372733 PSTPIP2Q9H939 334 aa17.87■□□□□ 0.45
SDC4-201ENST00000372733 NENFQ9UMX5 172 aa17.87■□□□□ 0.45
SDC4-201ENST00000372733 MEIS1O00470 390 aa17.87■□□□□ 0.45
SDC4-201ENST00000372733 UFL1O94874 794 aa17.87■□□□□ 0.45
SDC4-201ENST00000372733 MRPL12P52815 198 aaKnown RBP17.87■□□□□ 0.45
SDC4-201ENST00000372733 GPSM2P81274 684 aa17.87■□□□□ 0.45
SDC4-201ENST00000372733 KRT71Q3SY84 523 aa17.87■□□□□ 0.45
SDC4-201ENST00000372733 MFSD14BQ5SR56 506 aa17.87■□□□□ 0.45
SDC4-201ENST00000372733 KCTD1Q719H9 257 aa17.87■□□□□ 0.45
SDC4-201ENST00000372733 DAAM2Q86T65 1068 aa17.87■□□□□ 0.45
SDC4-201ENST00000372733 SLC40A1Q9NP59 571 aa17.87■□□□□ 0.45
SDC4-201ENST00000372733 BZW2Q9Y6E2 419 aaKnown RBP17.87■□□□□ 0.45
SDC4-201ENST00000372733 CCDC188H7C350 402 aa17.86■□□□□ 0.45
SDC4-201ENST00000372733 DDX3XO00571 662 aaKnown RBP eCLIP17.86■□□□□ 0.453e-7■■■■□ 21.4
SDC4-201ENST00000372733 AKAP3O75969 853 aa17.86■□□□□ 0.45
SDC4-201ENST00000372733 H2AFZP0C0S5 128 aa17.86■□□□□ 0.45
SDC4-201ENST00000372733 XRCC5P13010 732 aaKnown RBP17.86■□□□□ 0.45
SDC4-201ENST00000372733 SMTNP53814 917 aa17.86■□□□□ 0.45
SDC4-201ENST00000372733 PSMC6P62333 389 aa17.86■□□□□ 0.45
SDC4-201ENST00000372733 DHX9Q08211 1270 aaKnown RBP17.86■□□□□ 0.45
SDC4-201ENST00000372733 MTMR3Q13615 1198 aa17.86■□□□□ 0.45
SDC4-201ENST00000372733 EPHA7Q15375 998 aa17.86■□□□□ 0.45
SDC4-201ENST00000372733 H2AFVQ71UI9 128 aa17.86■□□□□ 0.45
SDC4-201ENST00000372733 U2AF1L4Q8WU68 220 aaKnown RBP17.86■□□□□ 0.45
SDC4-201ENST00000372733 RAPGEF5Q92565 580 aa17.86■□□□□ 0.45
SDC4-201ENST00000372733 OSBPL7Q9BZF2 842 aa17.86■□□□□ 0.45
SDC4-201ENST00000372733 SIX2Q9NPC8 291 aa17.86■□□□□ 0.45
SDC4-201ENST00000372733 KLC4Q9NSK0 619 aa17.86■□□□□ 0.45
SDC4-201ENST00000372733 STXBP5LQ9Y2K9 1186 aa17.86■□□□□ 0.45
SDC4-201ENST00000372733 PRKCIP41743 596 aa17.86■□□□□ 0.45
SDC4-201ENST00000372733 CASP4P49662 377 aa17.86■□□□□ 0.45
SDC4-201ENST00000372733 PABPC4Q13310 644 aaKnown RBP eCLIP17.86■□□□□ 0.457e-6■■□□□ 14.2
SDC4-201ENST00000372733 AGBL2Q5U5Z8 902 aa17.86■□□□□ 0.45
SDC4-201ENST00000372733 FRMD5Q7Z6J6 570 aa17.86■□□□□ 0.45
SDC4-201ENST00000372733 SLFN11Q7Z7L1 901 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms