RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 LRFN2Q9ULH4 789 aa15.9■□□□□ 0.14
VPS29-201ENST00000360579 PCDHB12Q9Y5F1 795 aa15.9■□□□□ 0.14
VPS29-201ENST00000360579 TRPV2Q9Y5S1 764 aa15.9■□□□□ 0.14
VPS29-201ENST00000360579 ATP9AO75110 1047 aa15.89■□□□□ 0.13
VPS29-201ENST00000360579 SRGAP2BP0DMP2 458 aa15.89■□□□□ 0.13
VPS29-201ENST00000360579 TCF15Q12870 199 aa15.89■□□□□ 0.13
VPS29-201ENST00000360579 MTMR1Q13613 665 aa15.89■□□□□ 0.13
VPS29-201ENST00000360579 PAN2Q504Q3 1202 aaKnown RBP15.89■□□□□ 0.13
VPS29-201ENST00000360579 RBM23Q86U06 439 aaKnown RBP15.89■□□□□ 0.13
VPS29-201ENST00000360579 RTN4RL1Q86UN2 441 aaPredicted RBP15.89■□□□□ 0.13
VPS29-201ENST00000360579 NCOA7Q8NI08 942 aa15.89■□□□□ 0.13
VPS29-201ENST00000360579 CTCFLQ8NI51 663 aaPredicted RBP15.89■□□□□ 0.13
VPS29-201ENST00000360579 MICAL1Q8TDZ2 1067 aa15.89■□□□□ 0.13
VPS29-201ENST00000360579 LZTS2Q9BRK4 669 aa15.89■□□□□ 0.13
VPS29-201ENST00000360579 AZI2Q9H6S1 392 aa15.89■□□□□ 0.13
VPS29-201ENST00000360579 PADI3Q9ULW8 664 aa15.89■□□□□ 0.13
VPS29-201ENST00000360579 BARX2Q9UMQ3 279 aaPredicted RBP15.89■□□□□ 0.13
VPS29-201ENST00000360579 FARP1Q9Y4F1 1045 aaPredicted RBP15.89■□□□□ 0.13
VPS29-201ENST00000360579 IGSF9BQ9UPX0 1349 aa15.89■□□□□ 0.13
VPS29-201ENST00000360579 KAT6AQ92794 2004 aa15.89■□□□□ 0.13
VPS29-201ENST00000360579 GLP2RO95838 553 aa15.88■□□□□ 0.13
VPS29-201ENST00000360579 INSRRP14616 1297 aa15.88■□□□□ 0.13
VPS29-201ENST00000360579 ITGB5P18084 799 aa15.88■□□□□ 0.13
VPS29-201ENST00000360579 NUBP1P53384 320 aa15.88■□□□□ 0.13
VPS29-201ENST00000360579 PDE12Q6L8Q7 609 aaKnown RBP15.88■□□□□ 0.13
VPS29-201ENST00000360579 NME8Q8N427 588 aa15.88■□□□□ 0.13
VPS29-201ENST00000360579 RPGRIP1Q96KN7 1286 aa15.88■□□□□ 0.13
VPS29-201ENST00000360579 NEK1Q96PY6 1258 aa15.88■□□□□ 0.13
VPS29-201ENST00000360579 SENP2Q9HC62 589 aa15.88■□□□□ 0.13
VPS29-201ENST00000360579 JPH1Q9HDC5 661 aaPredicted RBP15.88■□□□□ 0.13
VPS29-201ENST00000360579 TRPC6Q9Y210 931 aa15.88■□□□□ 0.13
VPS29-201ENST00000360579 PCDHA2Q9Y5H9 948 aa15.88■□□□□ 0.13
VPS29-201ENST00000360579 ZDBF2Q9HCK1 2354 aa15.88■□□□□ 0.13
VPS29-201ENST00000360579 KDM3AQ9Y4C1 1321 aa15.88■□□□□ 0.13
VPS29-201ENST00000360579 SPDYE3A6NKU9 549 aa15.87■□□□□ 0.13
VPS29-201ENST00000360579 DDAH1O94760 285 aa15.87■□□□□ 0.13
VPS29-201ENST00000360579 CYP21A2P08686 494 aa15.87■□□□□ 0.13
VPS29-201ENST00000360579 GNAQP50148 359 aa15.87■□□□□ 0.13
VPS29-201ENST00000360579 SPOUT1Q5T280 376 aaKnown RBP15.87■□□□□ 0.13
VPS29-201ENST00000360579 CELF4Q9BZC1 486 aaKnown RBP15.87■□□□□ 0.13
VPS29-201ENST00000360579 PSTPIP2Q9H939 334 aa15.87■□□□□ 0.13
VPS29-201ENST00000360579 TLR9Q9NR96 1032 aa15.87■□□□□ 0.13
VPS29-201ENST00000360579 PCDHB7Q9Y5E2 793 aa15.87■□□□□ 0.13
VPS29-201ENST00000360579 UBIAD1Q9Y5Z9 338 aa15.87■□□□□ 0.13
VPS29-201ENST00000360579 BAZ2BQ9UIF8 2168 aaKnown RBP15.86■□□□□ 0.13
VPS29-201ENST00000360579 GFRA3O60609 400 aa15.86■□□□□ 0.13
VPS29-201ENST00000360579 PPFIA3O75145 1194 aa15.86■□□□□ 0.13
VPS29-201ENST00000360579 SARSP49591 514 aaKnown RBP15.86■□□□□ 0.13
VPS29-201ENST00000360579 TMEM62Q0P6H9 643 aa15.86■□□□□ 0.13
VPS29-201ENST00000360579 PTPN21Q16825 1174 aa15.86■□□□□ 0.13
VPS29-201ENST00000360579 ODR4Q5SWX8 454 aa15.86■□□□□ 0.13
VPS29-201ENST00000360579 PLPPR4Q7Z2D5 763 aa15.86■□□□□ 0.13
VPS29-201ENST00000360579 ATP8B4Q8TF62 1192 aa15.86■□□□□ 0.13
VPS29-201ENST00000360579 RUFY2Q8WXA3 655 aa15.86■□□□□ 0.13
VPS29-201ENST00000360579 SUSD6Q92537 303 aa15.86■□□□□ 0.13
VPS29-201ENST00000360579 IL25Q9H293 177 aa15.86■□□□□ 0.13
VPS29-201ENST00000360579 JADE2Q9NQC1 790 aa15.86■□□□□ 0.13
VPS29-201ENST00000360579 PKD2L1Q9P0L9 805 aa15.86■□□□□ 0.13
VPS29-201ENST00000360579 CFAP54Q96N23 3096 aa15.86■□□□□ 0.13
VPS29-201ENST00000360579 DOCK5Q9H7D0 1870 aa15.86■□□□□ 0.13
VPS29-201ENST00000360579 SMIM35A0A1B0GVV1 85 aa15.85■□□□□ 0.13
VPS29-201ENST00000360579 E7EWF7 191 aa15.85■□□□□ 0.13
VPS29-201ENST00000360579 KRT76Q01546 638 aa15.85■□□□□ 0.13
VPS29-201ENST00000360579 DUSP6Q16828 381 aa15.85■□□□□ 0.13
VPS29-201ENST00000360579 ZNF654Q8IZM8 581 aa15.85■□□□□ 0.13
VPS29-201ENST00000360579 IGDCC4Q8TDY8 1250 aa15.85■□□□□ 0.13
VPS29-201ENST00000360579 ASIC4Q96FT7 647 aa15.85■□□□□ 0.13
VPS29-201ENST00000360579 C1orf112Q9NSG2 853 aa15.85■□□□□ 0.13
VPS29-201ENST00000360579 SLC9A2Q9UBY0 812 aa15.85■□□□□ 0.13
VPS29-201ENST00000360579 MYO15AQ9UKN7 3530 aa15.85■□□□□ 0.13
VPS29-201ENST00000360579 ZFHX2Q9C0A1 2572 aaPredicted RBP15.85■□□□□ 0.13
VPS29-201ENST00000360579 CACNA1HO95180 2353 aa15.85■□□□□ 0.13
VPS29-201ENST00000360579 PER2O15055 1255 aa15.84■□□□□ 0.13
VPS29-201ENST00000360579 FGF18O76093 207 aa15.84■□□□□ 0.13
VPS29-201ENST00000360579 AVPR2P30518 371 aa15.84■□□□□ 0.13
VPS29-201ENST00000360579 GATMP50440 423 aa15.84■□□□□ 0.13
VPS29-201ENST00000360579 SLC26A2P50443 739 aa15.84■□□□□ 0.13
VPS29-201ENST00000360579 STAT5BP51692 787 aa15.84■□□□□ 0.13
VPS29-201ENST00000360579 FOXK2Q01167 660 aa15.84■□□□□ 0.13
VPS29-201ENST00000360579 NFX1Q12986 1120 aaKnown RBP15.84■□□□□ 0.13
VPS29-201ENST00000360579 PLCB4Q15147 1175 aa15.84■□□□□ 0.13
VPS29-201ENST00000360579 TMEM184AQ6ZMB5 413 aa15.84■□□□□ 0.13
VPS29-201ENST00000360579 ZBTB33Q86T24 672 aa15.84■□□□□ 0.13
VPS29-201ENST00000360579 THNSL1Q8IYQ7 743 aa15.84■□□□□ 0.13
VPS29-201ENST00000360579 ATOH1Q92858 354 aaPredicted RBP15.84■□□□□ 0.13
VPS29-201ENST00000360579 ZBTB10Q96DT7 871 aa15.84■□□□□ 0.13
VPS29-201ENST00000360579 PCYT2Q99447 389 aa15.84■□□□□ 0.13
VPS29-201ENST00000360579 SDF4Q9BRK5 362 aa15.84■□□□□ 0.13
VPS29-201ENST00000360579 MTA3Q9BTC8 594 aa15.84■□□□□ 0.13
VPS29-201ENST00000360579 TMX1Q9H3N1 280 aa15.84■□□□□ 0.13
VPS29-201ENST00000360579 LZTS1Q9Y250 596 aa15.84■□□□□ 0.13
VPS29-201ENST00000360579 PCDHGC5Q9Y5F6 944 aa15.84■□□□□ 0.13
VPS29-201ENST00000360579 DENND3A2RUS2 1198 aa15.83■□□□□ 0.12
VPS29-201ENST00000360579 TBKBP1A7MCY6 615 aa15.83■□□□□ 0.12
VPS29-201ENST00000360579 RPS6KA5O75582 802 aa15.83■□□□□ 0.12
VPS29-201ENST00000360579 VCPP55072 806 aaKnown RBP15.83■□□□□ 0.12
VPS29-201ENST00000360579 CASC1Q6TDU7 716 aa15.83■□□□□ 0.12
VPS29-201ENST00000360579 MTHFD1LQ6UB35 978 aa15.83■□□□□ 0.12
VPS29-201ENST00000360579 SLC24A5Q71RS6 500 aa15.83■□□□□ 0.12
VPS29-201ENST00000360579 TEX2Q8IWB9 1127 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms