RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 ZNF280CQ8ND82 737 aa10.28□□□□□ -0.76
ATG4A-202ENST00000345734 CLEC4DQ8WXI8 215 aa10.28□□□□□ -0.76
ATG4A-202ENST00000345734 SECISBP2LQ93073 1101 aaKnown RBP10.28□□□□□ -0.76
ATG4A-202ENST00000345734 WNK4Q96J92 1243 aa10.28□□□□□ -0.76
ATG4A-202ENST00000345734 SLC38A10Q9HBR0 1119 aa10.28□□□□□ -0.76
ATG4A-202ENST00000345734 SLC39A2Q9NP94 309 aa10.28□□□□□ -0.76
ATG4A-202ENST00000345734 PICK1Q9NRD5 415 aa10.28□□□□□ -0.76
ATG4A-202ENST00000345734 HOMER2Q9NSB8 354 aa10.28□□□□□ -0.76
ATG4A-202ENST00000345734 COL20A1Q9P218 1284 aa10.28□□□□□ -0.76
ATG4A-202ENST00000345734 VAV3Q9UKW4 847 aa10.28□□□□□ -0.76
ATG4A-202ENST00000345734 PCDHB11Q9Y5F2 797 aa10.28□□□□□ -0.76
ATG4A-202ENST00000345734 SSBP05455 408 aaKnown RBP eCLIP10.28□□□□□ -0.76
ATG4A-202ENST00000345734 ALAS1P13196 640 aa10.28□□□□□ -0.76
ATG4A-202ENST00000345734 YBX3P16989 372 aaKnown RBP eCLIP10.28□□□□□ -0.76
ATG4A-202ENST00000345734 SFPQP23246 707 aaKnown RBP eCLIP10.28□□□□□ -0.76
ATG4A-202ENST00000345734 SLC20A2Q08357 652 aa10.28□□□□□ -0.76
ATG4A-202ENST00000345734 STIM1Q13586 685 aa10.28□□□□□ -0.76
ATG4A-202ENST00000345734 KRT31Q15323 416 aa10.28□□□□□ -0.76
ATG4A-202ENST00000345734 POTEGQ6S5H5 508 aa10.28□□□□□ -0.76
ATG4A-202ENST00000345734 UNC13DQ70J99 1090 aa10.28□□□□□ -0.76
ATG4A-202ENST00000345734 CATSPER3Q86XQ3 398 aa10.28□□□□□ -0.76
ATG4A-202ENST00000345734 CREBRFQ8IUR6 639 aa10.28□□□□□ -0.76
ATG4A-202ENST00000345734 CCDC47Q96A33 483 aaKnown RBP10.28□□□□□ -0.76
ATG4A-202ENST00000345734 KLRG1Q96E93 195 aa10.28□□□□□ -0.76
ATG4A-202ENST00000345734 FAM20AQ96MK3 541 aa10.28□□□□□ -0.76
ATG4A-202ENST00000345734 SYT17Q9BSW7 474 aa10.28□□□□□ -0.76
ATG4A-202ENST00000345734 RNF181Q9P0P0 153 aa10.28□□□□□ -0.76
ATG4A-202ENST00000345734 ADD3Q9UEY8 706 aaKnown RBP10.28□□□□□ -0.76
ATG4A-202ENST00000345734 PPP1R9AQ9ULJ8 1098 aa10.28□□□□□ -0.76
ATG4A-202ENST00000345734 ZHX2Q9Y6X8 837 aa10.28□□□□□ -0.76
ATG4A-202ENST00000345734 KDM3AQ9Y4C1 1321 aa10.28□□□□□ -0.76
ATG4A-202ENST00000345734 EML1O00423 815 aa10.27□□□□□ -0.77
ATG4A-202ENST00000345734 MEIS1O00470 390 aa10.27□□□□□ -0.77
ATG4A-202ENST00000345734 PSMA7O14818 248 aa10.27□□□□□ -0.77
ATG4A-202ENST00000345734 PLA2G4BP0C869 781 aa10.27□□□□□ -0.77
ATG4A-202ENST00000345734 SPATA31C1P0DKV0 1188 aa10.27□□□□□ -0.77
ATG4A-202ENST00000345734 IDEP14735 1019 aa10.27□□□□□ -0.77
ATG4A-202ENST00000345734 HSD17B4P51659 736 aa10.27□□□□□ -0.77
ATG4A-202ENST00000345734 USP14P54578 494 aa10.27□□□□□ -0.77
ATG4A-202ENST00000345734 TBX2Q13207 712 aaPredicted RBP10.27□□□□□ -0.77
ATG4A-202ENST00000345734 MUM1L1Q5H9M0 696 aa10.27□□□□□ -0.77
ATG4A-202ENST00000345734 PLA2G2CQ5R387 149 aa10.27□□□□□ -0.77
ATG4A-202ENST00000345734 TTI2Q6NXR4 508 aa10.27□□□□□ -0.77
ATG4A-202ENST00000345734 IRF2BP1Q8IU81 584 aa10.27□□□□□ -0.77
ATG4A-202ENST00000345734 DNAJC19Q96DA6 116 aa10.27□□□□□ -0.77
ATG4A-202ENST00000345734 DHTKD1Q96HY7 919 aaPredicted RBP10.27□□□□□ -0.77
ATG4A-202ENST00000345734 PRIMPOLQ96LW4 560 aa10.27□□□□□ -0.77
ATG4A-202ENST00000345734 NT5C3AQ9H0P0 336 aa10.27□□□□□ -0.77
ATG4A-202ENST00000345734 RBBP6Q7Z6E9 1792 aaKnown RBP10.27□□□□□ -0.77
ATG4A-202ENST00000345734 NPHP3-ACAD11A0A0J9YXS1 232 aa10.27□□□□□ -0.77
ATG4A-202ENST00000345734 USP27XA6NNY8 438 aa10.27□□□□□ -0.77
ATG4A-202ENST00000345734 KCNJ18B7U540 433 aa10.27□□□□□ -0.77
ATG4A-202ENST00000345734 HMGCS2P54868 508 aa10.27□□□□□ -0.77
ATG4A-202ENST00000345734 MCCD1P59942 119 aaPredicted RBP10.27□□□□□ -0.77
ATG4A-202ENST00000345734 PSMC6P62333 389 aa10.27□□□□□ -0.77
ATG4A-202ENST00000345734 KCNJ12Q14500 433 aa10.27□□□□□ -0.77
ATG4A-202ENST00000345734 TCP11X2Q5H9J9 407 aa10.27□□□□□ -0.77
ATG4A-202ENST00000345734 SPECC1LQ69YQ0 1117 aa10.27□□□□□ -0.77
ATG4A-202ENST00000345734 CNNM4Q6P4Q7 775 aa10.27□□□□□ -0.77
ATG4A-202ENST00000345734 GLIS3Q8NEA6 775 aa10.27□□□□□ -0.77
ATG4A-202ENST00000345734 ATG4CQ96DT6 458 aa10.27□□□□□ -0.77
ATG4A-202ENST00000345734 EEF2KMTQ96G04 330 aa10.27□□□□□ -0.77
ATG4A-202ENST00000345734 TRIM47Q96LD4 638 aa10.27□□□□□ -0.77
ATG4A-202ENST00000345734 DUSP9Q99956 384 aaKnown RBP10.27□□□□□ -0.77
ATG4A-202ENST00000345734 SRRTQ9BXP5 876 aaKnown RBP10.27□□□□□ -0.77
ATG4A-202ENST00000345734 AS3MTQ9HBK9 375 aa10.27□□□□□ -0.77
ATG4A-202ENST00000345734 TAB2Q9NYJ8 693 aa10.27□□□□□ -0.77
ATG4A-202ENST00000345734 LIMA1Q9UHB6 759 aaKnown RBP10.27□□□□□ -0.77
ATG4A-202ENST00000345734 ZHX1Q9UKY1 873 aaPredicted RBP10.27□□□□□ -0.77
ATG4A-202ENST00000345734 PVALEFA0A1B0GWK0 134 aa10.26□□□□□ -0.77
ATG4A-202ENST00000345734 ARP10275 920 aa10.26□□□□□ -0.77
ATG4A-202ENST00000345734 CCNE1P24864 410 aa10.26□□□□□ -0.77
ATG4A-202ENST00000345734 COPB1P53618 953 aaKnown RBP10.26□□□□□ -0.77
ATG4A-202ENST00000345734 CYP4A11Q02928 519 aa10.26□□□□□ -0.77
ATG4A-202ENST00000345734 CEP55Q53EZ4 464 aa10.26□□□□□ -0.77
ATG4A-202ENST00000345734 DNTTIP2Q5QJE6 756 aaKnown RBP10.26□□□□□ -0.77
ATG4A-202ENST00000345734 HAUS3Q68CZ6 603 aa10.26□□□□□ -0.77
ATG4A-202ENST00000345734 ANKRD40Q6AI12 368 aa10.26□□□□□ -0.77
ATG4A-202ENST00000345734 IL31RAQ8NI17 732 aa10.26□□□□□ -0.77
ATG4A-202ENST00000345734 ERMNQ8TAM6 284 aa10.26□□□□□ -0.77
ATG4A-202ENST00000345734 P2RX5Q93086 422 aa10.26□□□□□ -0.77
ATG4A-202ENST00000345734 CTAGE1Q96RT6 745 aa10.26□□□□□ -0.77
ATG4A-202ENST00000345734 VPS16Q9H269 839 aa10.26□□□□□ -0.77
ATG4A-202ENST00000345734 SEMA6BQ9H3T3 888 aa10.26□□□□□ -0.77
ATG4A-202ENST00000345734 EHMT1Q9H9B1 1298 aa10.26□□□□□ -0.77
ATG4A-202ENST00000345734 GNEQ9Y223 722 aaKnown RBP10.26□□□□□ -0.77
ATG4A-202ENST00000345734 R3HCC1Q9Y3T6 440 aaKnown RBP10.26□□□□□ -0.77
ATG4A-202ENST00000345734 PPP2R3BQ9Y5P8 575 aa10.26□□□□□ -0.77
ATG4A-202ENST00000345734 LRRC10BA6NIK2 292 aa10.25□□□□□ -0.77
ATG4A-202ENST00000345734 ADM5C9JUS6 153 aa10.25□□□□□ -0.77
ATG4A-202ENST00000345734 VWA5AO00534 786 aa10.25□□□□□ -0.77
ATG4A-202ENST00000345734 SLC26A4O43511 780 aa10.25□□□□□ -0.77
ATG4A-202ENST00000345734 CHMP2AO43633 222 aa10.25□□□□□ -0.77
ATG4A-202ENST00000345734 ZBED4O75132 1171 aa10.25□□□□□ -0.77
ATG4A-202ENST00000345734 USP2O75604 605 aaPredicted RBP10.25□□□□□ -0.77
ATG4A-202ENST00000345734 PSMD10O75832 226 aa10.25□□□□□ -0.77
ATG4A-202ENST00000345734 RPA1P27694 616 aa10.25□□□□□ -0.77
ATG4A-202ENST00000345734 PBX1P40424 430 aa10.25□□□□□ -0.77
ATG4A-202ENST00000345734 SLC12A3P55017 1021 aa10.25□□□□□ -0.77
ATG4A-202ENST00000345734 IRX3P78415 501 aaPredicted RBP10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms