RNA–Protein interactions for RNA: ENST00000337841.4

SPTLC1-202, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SPTLC1, Length 946 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-202ENST00000337841 SMIM10L2AP0DMW4 78 aa13.35□□□□□ -0.27
SPTLC1-202ENST00000337841 SMIM10L2BP0DMW5 78 aa13.35□□□□□ -0.27
SPTLC1-202ENST00000337841 XRCC6P12956 609 aaKnown RBP eCLIP13.35□□□□□ -0.27
SPTLC1-202ENST00000337841 INSRRP14616 1297 aa13.35□□□□□ -0.27
SPTLC1-202ENST00000337841 MUTP22033 750 aa13.35□□□□□ -0.27
SPTLC1-202ENST00000337841 MARCKSP29966 332 aaPredicted RBP13.35□□□□□ -0.27
SPTLC1-202ENST00000337841 CCT6AP40227 531 aaKnown RBP13.35□□□□□ -0.27
SPTLC1-202ENST00000337841 UBA7P41226 1012 aa13.35□□□□□ -0.27
SPTLC1-202ENST00000337841 PPFIA1Q13136 1202 aa13.35□□□□□ -0.27
SPTLC1-202ENST00000337841 SNX17Q15036 470 aa13.35□□□□□ -0.27
SPTLC1-202ENST00000337841 IL17AQ16552 155 aa13.35□□□□□ -0.27
SPTLC1-202ENST00000337841 HAUS3Q68CZ6 603 aa13.35□□□□□ -0.27
SPTLC1-202ENST00000337841 TRMT1LQ7Z2T5 733 aaKnown RBP13.35□□□□□ -0.27
SPTLC1-202ENST00000337841 ANKRD33Q7Z3H0 272 aa13.35□□□□□ -0.27
SPTLC1-202ENST00000337841 C4orf19Q8IY42 314 aa13.35□□□□□ -0.27
SPTLC1-202ENST00000337841 KRI1Q8N9T8 703 aaKnown RBP13.35□□□□□ -0.27
SPTLC1-202ENST00000337841 BANK1Q8NDB2 785 aa13.35□□□□□ -0.27
SPTLC1-202ENST00000337841 KCNG4Q8TDN1 519 aa13.35□□□□□ -0.27
SPTLC1-202ENST00000337841 POLR3CQ9BUI4 534 aaPredicted RBP13.35□□□□□ -0.27
SPTLC1-202ENST00000337841 FTOQ9C0B1 505 aaKnown RBP eCLIP13.35□□□□□ -0.27
SPTLC1-202ENST00000337841 SETD4Q9NVD3 440 aa13.35□□□□□ -0.27
SPTLC1-202ENST00000337841 RCOR1Q9UKL0 485 aa13.35□□□□□ -0.27
SPTLC1-202ENST00000337841 SLC26A4O43511 780 aa13.34□□□□□ -0.27
SPTLC1-202ENST00000337841 EVI5O60447 810 aa13.34□□□□□ -0.27
SPTLC1-202ENST00000337841 PQBP1O60828 265 aaKnown RBP13.34□□□□□ -0.27
SPTLC1-202ENST00000337841 OATP04181 439 aa13.34□□□□□ -0.27
SPTLC1-202ENST00000337841 ATP4AP20648 1035 aa13.34□□□□□ -0.27
SPTLC1-202ENST00000337841 RPA1P27694 616 aa13.34□□□□□ -0.27
SPTLC1-202ENST00000337841 CYP4A11Q02928 519 aa13.34□□□□□ -0.27
SPTLC1-202ENST00000337841 CTTNQ14247 550 aaKnown RBP13.34□□□□□ -0.27
SPTLC1-202ENST00000337841 PTGISQ16647 500 aa13.34□□□□□ -0.27
SPTLC1-202ENST00000337841 TRIM60Q495X7 471 aa13.34□□□□□ -0.27
SPTLC1-202ENST00000337841 NACC1Q96RE7 527 aa13.34□□□□□ -0.27
SPTLC1-202ENST00000337841 NIFKQ9BYG3 293 aaKnown RBP13.34□□□□□ -0.27
SPTLC1-202ENST00000337841 SCAND2PQ9GZW5 306 aaPredicted RBP13.34□□□□□ -0.27
SPTLC1-202ENST00000337841 GTF2IRD1Q9UHL9 959 aa13.34□□□□□ -0.27
SPTLC1-202ENST00000337841 NR2E3Q9Y5X4 410 aa13.34□□□□□ -0.27
SPTLC1-202ENST00000337841 HTTP42858 3142 aa13.34□□□□□ -0.27
SPTLC1-202ENST00000337841 ZNF862O60290 1169 aa13.33□□□□□ -0.28
SPTLC1-202ENST00000337841 LYPLA2O95372 231 aa13.33□□□□□ -0.28
SPTLC1-202ENST00000337841 ME1P48163 572 aa13.33□□□□□ -0.28
SPTLC1-202ENST00000337841 IGBP1P78318 339 aa13.33□□□□□ -0.28
SPTLC1-202ENST00000337841 PRKCEQ02156 737 aa13.33□□□□□ -0.28
SPTLC1-202ENST00000337841 GRIK4Q16099 956 aa13.33□□□□□ -0.28
SPTLC1-202ENST00000337841 UGCGQ16739 394 aa13.33□□□□□ -0.28
SPTLC1-202ENST00000337841 GDF6Q6KF10 455 aaPredicted RBP13.33□□□□□ -0.28
SPTLC1-202ENST00000337841 CATSPER3Q86XQ3 398 aa13.33□□□□□ -0.28
SPTLC1-202ENST00000337841 FAM126BQ8IXS8 530 aa13.33□□□□□ -0.28
SPTLC1-202ENST00000337841 EXOC8Q8IYI6 725 aa13.33□□□□□ -0.28
SPTLC1-202ENST00000337841 KCTD17Q8N5Z5 321 aa13.33□□□□□ -0.28
SPTLC1-202ENST00000337841 SNX29Q8TEQ0 813 aa13.33□□□□□ -0.28
SPTLC1-202ENST00000337841 PPP1R13LQ8WUF5 828 aa13.33□□□□□ -0.28
SPTLC1-202ENST00000337841 CDK5RAP3Q96JB5 506 aa13.33□□□□□ -0.28
SPTLC1-202ENST00000337841 SPATA32Q96LK8 384 aa13.33□□□□□ -0.28
SPTLC1-202ENST00000337841 LXNQ9BS40 222 aa13.33□□□□□ -0.28
SPTLC1-202ENST00000337841 TRPV6Q9H1D0 765 aa13.33□□□□□ -0.28
SPTLC1-202ENST00000337841 ANKEF1Q9NU02 776 aa13.33□□□□□ -0.28
SPTLC1-202ENST00000337841 TMEM39AQ9NV64 488 aa13.33□□□□□ -0.28
SPTLC1-202ENST00000337841 PRKAG2Q9UGJ0 569 aa13.33□□□□□ -0.28
SPTLC1-202ENST00000337841 FBXO2Q9UK22 296 aaPredicted RBP13.33□□□□□ -0.28
SPTLC1-202ENST00000337841 IGSF9BQ9UPX0 1349 aa13.33□□□□□ -0.28
SPTLC1-202ENST00000337841 MAGEB2O15479 319 aa13.32□□□□□ -0.28
SPTLC1-202ENST00000337841 CUTAO60888 179 aa13.32□□□□□ -0.28
SPTLC1-202ENST00000337841 MED24O75448 989 aa13.32□□□□□ -0.28
SPTLC1-202ENST00000337841 SPATA31C1P0DKV0 1188 aa13.32□□□□□ -0.28
SPTLC1-202ENST00000337841 CDC25AP30304 524 aa13.32□□□□□ -0.28
SPTLC1-202ENST00000337841 YWHABP31946 246 aaKnown RBP13.32□□□□□ -0.28
SPTLC1-202ENST00000337841 TXLNAP40222 546 aa13.32□□□□□ -0.28
SPTLC1-202ENST00000337841 PTK7Q13308 1070 aa13.32□□□□□ -0.28
SPTLC1-202ENST00000337841 ZRSR1Q15695 479 aaKnown RBP13.32□□□□□ -0.28
SPTLC1-202ENST00000337841 CABP7Q86V35 215 aa13.32□□□□□ -0.28
SPTLC1-202ENST00000337841 ZNF579Q8NAF0 562 aaKnown RBP13.32□□□□□ -0.28
SPTLC1-202ENST00000337841 RASSF8Q8NHQ8 419 aa13.32□□□□□ -0.28
SPTLC1-202ENST00000337841 CALML4Q96GE6 196 aa13.32□□□□□ -0.28
SPTLC1-202ENST00000337841 CCDC43Q96MW1 224 aaKnown RBP13.32□□□□□ -0.28
SPTLC1-202ENST00000337841 NT5C3AQ9H0P0 336 aa13.32□□□□□ -0.28
SPTLC1-202ENST00000337841 CSRNP2Q9H175 543 aa13.32□□□□□ -0.28
SPTLC1-202ENST00000337841 TRMT13Q9NUP7 481 aaKnown RBP13.32□□□□□ -0.28
SPTLC1-202ENST00000337841 SEPT9Q9UHD8 586 aaPredicted RBP13.32□□□□□ -0.28
SPTLC1-202ENST00000337841 KIAA1024Q9UPX6 916 aa13.32□□□□□ -0.28
SPTLC1-202ENST00000337841 DNM3Q9UQ16 869 aa13.32□□□□□ -0.28
SPTLC1-202ENST00000337841 PPME1Q9Y570 386 aa13.32□□□□□ -0.28
SPTLC1-202ENST00000337841 COL1A2P08123 1366 aa13.32□□□□□ -0.28
SPTLC1-202ENST00000337841 PP2D1A8MPX8 630 aa13.31□□□□□ -0.28
SPTLC1-202ENST00000337841 B4GALT4O60513 344 aa13.31□□□□□ -0.28
SPTLC1-202ENST00000337841 STBD1O95210 358 aa13.31□□□□□ -0.28
SPTLC1-202ENST00000337841 CD4P01730 458 aa13.31□□□□□ -0.28
SPTLC1-202ENST00000337841 RPLP2P05387 115 aaKnown RBP13.31□□□□□ -0.28
SPTLC1-202ENST00000337841 CLTBP09497 229 aa13.31□□□□□ -0.28
SPTLC1-202ENST00000337841 KLRC1P26715 233 aa13.31□□□□□ -0.28
SPTLC1-202ENST00000337841 ZNF200P98182 395 aaPredicted RBP13.31□□□□□ -0.28
SPTLC1-202ENST00000337841 MLLT1Q03111 559 aaPredicted RBP13.31□□□□□ -0.28
SPTLC1-202ENST00000337841 FAAP100Q0VG06 881 aa13.31□□□□□ -0.28
SPTLC1-202ENST00000337841 BFSP2Q13515 415 aa13.31□□□□□ -0.28
SPTLC1-202ENST00000337841 XKR9Q5GH70 373 aa13.31□□□□□ -0.28
SPTLC1-202ENST00000337841 RSPH3Q86UC2 560 aa13.31□□□□□ -0.28
SPTLC1-202ENST00000337841 CCDC155Q8N6L0 562 aa13.31□□□□□ -0.28
SPTLC1-202ENST00000337841 RETREG2Q8NC44 543 aa13.31□□□□□ -0.28
SPTLC1-202ENST00000337841 LEO1Q8WVC0 666 aaPredicted RBP13.31□□□□□ -0.28
SPTLC1-202ENST00000337841 LMBR1Q8WVP7 490 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms