RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 EDEM3Q9BZQ6 932 aa11.49□□□□□ -0.57
COL3A1-202ENST00000317840 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.49□□□□□ -0.57
COL3A1-202ENST00000317840 PGRMC1O00264 195 aaKnown RBP11.49□□□□□ -0.57
COL3A1-202ENST00000317840 GFPT2O94808 682 aa11.49□□□□□ -0.57
COL3A1-202ENST00000317840 FAM13AO94988 1023 aa11.49□□□□□ -0.57
COL3A1-202ENST00000317840 ICA1Q05084 483 aa11.49□□□□□ -0.57
COL3A1-202ENST00000317840 WDR78Q5VTH9 848 aa11.49□□□□□ -0.57
COL3A1-202ENST00000317840 RUFY4Q6ZNE9 571 aa11.49□□□□□ -0.57
COL3A1-202ENST00000317840 MMS22LQ6ZRQ5 1243 aa11.49□□□□□ -0.57
COL3A1-202ENST00000317840 MTMR9Q96QG7 549 aa11.49□□□□□ -0.57
COL3A1-202ENST00000317840 RTFDC1Q9BY42 306 aaPredicted RBP11.49□□□□□ -0.57
COL3A1-202ENST00000317840 AMACRQ9UHK6 382 aa11.49□□□□□ -0.57
COL3A1-202ENST00000317840 UTP11Q9Y3A2 253 aaKnown RBP11.49□□□□□ -0.57
COL3A1-202ENST00000317840 AFPP02771 609 aaKnown RBP11.48□□□□□ -0.57
COL3A1-202ENST00000317840 NT5C2P49902 561 aa11.48□□□□□ -0.57
COL3A1-202ENST00000317840 ITIH3Q06033 890 aa11.48□□□□□ -0.57
COL3A1-202ENST00000317840 SLFN13Q68D06 897 aa11.48□□□□□ -0.57
COL3A1-202ENST00000317840 NIM1KQ8IY84 436 aa11.48□□□□□ -0.57
COL3A1-202ENST00000317840 ATP6V1G3Q96LB4 118 aa11.48□□□□□ -0.57
COL3A1-202ENST00000317840 CEP63Q96MT8 703 aa11.48□□□□□ -0.57
COL3A1-202ENST00000317840 SELENOSQ9BQE4 189 aa11.48□□□□□ -0.57
COL3A1-202ENST00000317840 ZBTB21Q9ULJ3 1066 aa11.48□□□□□ -0.57
COL3A1-202ENST00000317840 SART1O43290 800 aaKnown RBP11.48□□□□□ -0.57
COL3A1-202ENST00000317840 PPP1R37O75864 691 aa11.48□□□□□ -0.57
COL3A1-202ENST00000317840 TM4SF1P30408 202 aa11.48□□□□□ -0.57
COL3A1-202ENST00000317840 SP4Q02446 784 aa11.48□□□□□ -0.57
COL3A1-202ENST00000317840 ARHGAP44Q17R89 818 aa11.48□□□□□ -0.57
COL3A1-202ENST00000317840 SFR1Q86XK3 245 aa11.48□□□□□ -0.57
COL3A1-202ENST00000317840 SYCP3Q8IZU3 236 aa11.48□□□□□ -0.57
COL3A1-202ENST00000317840 FGFBP2Q9BYJ0 223 aa11.48□□□□□ -0.57
COL3A1-202ENST00000317840 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.48□□□□□ -0.57
COL3A1-202ENST00000317840 GCNT4Q9P109 453 aa11.48□□□□□ -0.57
COL3A1-202ENST00000317840 BCL9LQ86UU0 1499 aa11.48□□□□□ -0.57
COL3A1-202ENST00000317840 UBR2Q8IWV8 1755 aa11.48□□□□□ -0.57
COL3A1-202ENST00000317840 GOLGA6L10A0A0M3HER8 536 aa11.48□□□□□ -0.57
COL3A1-202ENST00000317840 hCG_1984214I3L0E3 225 aa11.48□□□□□ -0.57
COL3A1-202ENST00000317840 CALUO43852 315 aaPredicted RBP11.48□□□□□ -0.57
COL3A1-202ENST00000317840 STAT1P42224 750 aa11.48□□□□□ -0.57
COL3A1-202ENST00000317840 SEPT2Q15019 361 aa11.48□□□□□ -0.57
COL3A1-202ENST00000317840 ECM1Q16610 540 aa11.48□□□□□ -0.57
COL3A1-202ENST00000317840 CEP57Q86XR8 500 aa11.48□□□□□ -0.57
COL3A1-202ENST00000317840 ZNF713Q8N859 430 aaPredicted RBP11.48□□□□□ -0.57
COL3A1-202ENST00000317840 UHMK1Q8TAS1 419 aaKnown RBP11.48□□□□□ -0.57
COL3A1-202ENST00000317840 CTNNBL1Q8WYA6 563 aaPredicted RBP11.48□□□□□ -0.57
COL3A1-202ENST00000317840 CRAMP1Q96RY5 1269 aa11.48□□□□□ -0.57
COL3A1-202ENST00000317840 TAF1DQ9H5J8 278 aaPredicted RBP11.48□□□□□ -0.57
COL3A1-202ENST00000317840 JMJD4Q9H9V9 463 aa11.48□□□□□ -0.57
COL3A1-202ENST00000317840 NOVA2Q9UNW9 492 aaKnown RBP11.48□□□□□ -0.57
COL3A1-202ENST00000317840 ESYT2A0FGR8 921 aa11.47□□□□□ -0.57
COL3A1-202ENST00000317840 TLR2O60603 784 aa11.47□□□□□ -0.57
COL3A1-202ENST00000317840 IRX3P78415 501 aaPredicted RBP11.47□□□□□ -0.57
COL3A1-202ENST00000317840 DHX9Q08211 1270 aaKnown RBP11.47□□□□□ -0.57
COL3A1-202ENST00000317840 ORC2Q13416 577 aaPredicted RBP11.47□□□□□ -0.57
COL3A1-202ENST00000317840 TTLL12Q14166 644 aaPredicted RBP11.47□□□□□ -0.57
COL3A1-202ENST00000317840 MYCT1Q8N699 235 aa11.47□□□□□ -0.57
COL3A1-202ENST00000317840 USP38Q8NB14 1042 aa11.47□□□□□ -0.57
COL3A1-202ENST00000317840 BHMT2Q9H2M3 363 aa11.47□□□□□ -0.57
COL3A1-202ENST00000317840 ATP8A1Q9Y2Q0 1164 aa11.47□□□□□ -0.57
COL3A1-202ENST00000317840 MYH13Q9UKX3 1938 aa11.47□□□□□ -0.57
COL3A1-202ENST00000317840 ZBTB5O15062 677 aa11.47□□□□□ -0.57
COL3A1-202ENST00000317840 KIF4AO95239 1232 aa11.47□□□□□ -0.57
COL3A1-202ENST00000317840 UCHL3P15374 230 aa11.47□□□□□ -0.57
COL3A1-202ENST00000317840 GCFC2P16383 781 aaKnown RBP11.47□□□□□ -0.57
COL3A1-202ENST00000317840 CDC37Q16543 378 aaPredicted RBP11.47□□□□□ -0.57
COL3A1-202ENST00000317840 HS2ST1Q7LGA3 356 aa11.47□□□□□ -0.57
COL3A1-202ENST00000317840 ZNF233A6NK53 670 aa11.47□□□□□ -0.57
COL3A1-202ENST00000317840 HMGB1P1B2RPK0 211 aaPredicted RBP11.47□□□□□ -0.57
COL3A1-202ENST00000317840 PJA2O43164 708 aa11.47□□□□□ -0.57
COL3A1-202ENST00000317840 DAPK3O43293 454 aa11.47□□□□□ -0.57
COL3A1-202ENST00000317840 PHLPP1O60346 1717 aa11.47□□□□□ -0.57
COL3A1-202ENST00000317840 ABCB5Q2M3G0 1257 aa11.47□□□□□ -0.57
COL3A1-202ENST00000317840 GPATCH4Q5T3I0 446 aaKnown RBP11.47□□□□□ -0.57
COL3A1-202ENST00000317840 HGSNATQ68CP4 663 aa11.47□□□□□ -0.57
COL3A1-202ENST00000317840 TTLL6Q8N841 843 aa11.47□□□□□ -0.57
COL3A1-202ENST00000317840 SCFD1Q8WVM8 642 aa11.47□□□□□ -0.57
COL3A1-202ENST00000317840 RUBCNQ92622 972 aa11.47□□□□□ -0.57
COL3A1-202ENST00000317840 CAVIN3Q969G5 261 aa11.47□□□□□ -0.57
COL3A1-202ENST00000317840 ANO3Q9BYT9 981 aa11.47□□□□□ -0.57
COL3A1-202ENST00000317840 RIOX1Q9H6W3 641 aa11.47□□□□□ -0.57
COL3A1-202ENST00000317840 AMFRQ9UKV5 643 aa11.47□□□□□ -0.57
COL3A1-202ENST00000317840 GPR75-ASB3A0A0A6YYF3 556 aa11.46□□□□□ -0.57
COL3A1-202ENST00000317840 GRID2IPA4D2P6 1211 aa11.46□□□□□ -0.57
COL3A1-202ENST00000317840 DDX39AO00148 427 aaKnown RBP11.46□□□□□ -0.57
COL3A1-202ENST00000317840 GH2P01242 217 aa11.46□□□□□ -0.57
COL3A1-202ENST00000317840 CYP2J2P51589 502 aa11.46□□□□□ -0.57
COL3A1-202ENST00000317840 ZNF543Q08ER8 600 aa11.46□□□□□ -0.57
COL3A1-202ENST00000317840 MAEAQ7L5Y9 396 aa11.46□□□□□ -0.57
COL3A1-202ENST00000317840 TPH2Q8IWU9 490 aa11.46□□□□□ -0.57
COL3A1-202ENST00000317840 CCT8L2Q96SF2 557 aa11.46□□□□□ -0.57
COL3A1-202ENST00000317840 BZW2Q9Y6E2 419 aaKnown RBP11.46□□□□□ -0.57
COL3A1-202ENST00000317840 TIAM2Q8IVF5 1701 aa11.46□□□□□ -0.57
COL3A1-202ENST00000317840 ABCB11O95342 1321 aa11.46□□□□□ -0.57
COL3A1-202ENST00000317840 FGGP02679 453 aa11.46□□□□□ -0.57
COL3A1-202ENST00000317840 LLGL1Q15334 1064 aa11.46□□□□□ -0.57
COL3A1-202ENST00000317840 CDC42EP5Q6NZY7 148 aa11.46□□□□□ -0.57
COL3A1-202ENST00000317840 NLRP14Q86W24 1093 aa11.46□□□□□ -0.57
COL3A1-202ENST00000317840 TRIM59Q8IWR1 403 aa11.46□□□□□ -0.57
COL3A1-202ENST00000317840 NOC2LQ9Y3T9 749 aaKnown RBP11.46□□□□□ -0.57
COL3A1-202ENST00000317840 MYO1FO00160 1098 aa11.46□□□□□ -0.58
COL3A1-202ENST00000317840 TMOD1P28289 359 aa11.46□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms