RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 FAM167BQ9BTA0 163 aa11.91□□□□□ -0.5
LSM3-201ENST00000306024 BATF3Q9NR55 127 aa11.91□□□□□ -0.5
LSM3-201ENST00000306024 FEM1BQ9UK73 627 aa11.91□□□□□ -0.5
LSM3-201ENST00000306024 TPX2Q9ULW0 747 aaKnown RBP11.91□□□□□ -0.5
LSM3-201ENST00000306024 hCG_1984214I3L0E3 225 aa11.91□□□□□ -0.5
LSM3-201ENST00000306024 TBC1D12O60347 775 aa11.91□□□□□ -0.5
LSM3-201ENST00000306024 ABL1P00519 1130 aa11.91□□□□□ -0.5
LSM3-201ENST00000306024 COPB1P53618 953 aaKnown RBP11.91□□□□□ -0.5
LSM3-201ENST00000306024 DRP2Q13474 957 aa11.91□□□□□ -0.5
LSM3-201ENST00000306024 DLK2Q6UY11 383 aa11.91□□□□□ -0.5
LSM3-201ENST00000306024 CCDC170Q8IYT3 715 aa11.91□□□□□ -0.5
LSM3-201ENST00000306024 ZNF713Q8N859 430 aaPredicted RBP11.91□□□□□ -0.5
LSM3-201ENST00000306024 RPAP3Q9H6T3 665 aaPredicted RBP11.91□□□□□ -0.5
LSM3-201ENST00000306024 SH3GLB2Q9NR46 395 aa11.91□□□□□ -0.5
LSM3-201ENST00000306024 STIM2Q9P246 746 aa11.91□□□□□ -0.5
LSM3-201ENST00000306024 PRR12Q9ULL5 1215 aa11.91□□□□□ -0.5
LSM3-201ENST00000306024 NFU1Q9UMS0 254 aa11.91□□□□□ -0.5
LSM3-201ENST00000306024 CYP27A1Q02318 531 aa11.9□□□□□ -0.5
LSM3-201ENST00000306024 SEMA3FQ13275 785 aa11.9□□□□□ -0.5
LSM3-201ENST00000306024 PTGISQ16647 500 aa11.9□□□□□ -0.5
LSM3-201ENST00000306024 HVCN1Q96D96 273 aa11.9□□□□□ -0.5
LSM3-201ENST00000306024 ATP6V0A4Q9HBG4 840 aa11.9□□□□□ -0.5
LSM3-201ENST00000306024 EPB41L5Q9HCM4 733 aa11.9□□□□□ -0.5
LSM3-201ENST00000306024 ETAA1Q9NY74 926 aa11.9□□□□□ -0.5
LSM3-201ENST00000306024 SAMD15Q9P1V8 674 aa11.9□□□□□ -0.5
LSM3-201ENST00000306024 GYPCP04921 128 aa11.9□□□□□ -0.5
LSM3-201ENST00000306024 MDH1P40925 334 aaKnown RBP11.9□□□□□ -0.5
LSM3-201ENST00000306024 MXRA7P84157 204 aa11.9□□□□□ -0.5
LSM3-201ENST00000306024 ATRNL1Q5VV63 1379 aa11.9□□□□□ -0.5
LSM3-201ENST00000306024 TRAPPC11Q7Z392 1133 aa11.9□□□□□ -0.5
LSM3-201ENST00000306024 NEK8Q86SG6 692 aa11.9□□□□□ -0.5
LSM3-201ENST00000306024 SPDYE1Q8NFV5 336 aaPredicted RBP11.9□□□□□ -0.5
LSM3-201ENST00000306024 LPAR1Q92633 364 aa11.9□□□□□ -0.5
LSM3-201ENST00000306024 ZIM3Q96PE6 472 aa11.9□□□□□ -0.5
LSM3-201ENST00000306024 HSD3B7Q9H2F3 369 aa11.9□□□□□ -0.5
LSM3-201ENST00000306024 STK38LQ9Y2H1 464 aa11.9□□□□□ -0.5
LSM3-201ENST00000306024 PCDHB6Q9Y5E3 794 aa11.9□□□□□ -0.5
LSM3-201ENST00000306024 A0A1W2PRG0 241 aa11.9□□□□□ -0.5
LSM3-201ENST00000306024 USP17L15C9J2P7 530 aa11.9□□□□□ -0.5
LSM3-201ENST00000306024 USP17L13C9JLJ4 530 aa11.9□□□□□ -0.5
LSM3-201ENST00000306024 USP17L11C9JVI0 530 aa11.9□□□□□ -0.5
LSM3-201ENST00000306024 USP17L18D6R9N7 530 aa11.9□□□□□ -0.5
LSM3-201ENST00000306024 USP17L22D6RA61 530 aa11.9□□□□□ -0.5
LSM3-201ENST00000306024 USP17L17D6RBQ6 530 aa11.9□□□□□ -0.5
LSM3-201ENST00000306024 USP17L19D6RCP7 530 aa11.9□□□□□ -0.5
LSM3-201ENST00000306024 USP17L20D6RJB6 530 aa11.9□□□□□ -0.5
LSM3-201ENST00000306024 CYTH3O43739 400 aa11.9□□□□□ -0.5
LSM3-201ENST00000306024 VIMP08670 466 aaKnown RBP11.9□□□□□ -0.5
LSM3-201ENST00000306024 POLR2MP0CAP2 368 aa11.9□□□□□ -0.5
LSM3-201ENST00000306024 HIRAP54198 1017 aaPredicted RBP11.9□□□□□ -0.5
LSM3-201ENST00000306024 USP17L24Q0WX57 530 aa11.9□□□□□ -0.5
LSM3-201ENST00000306024 PTGDRQ13258 359 aa11.9□□□□□ -0.5
LSM3-201ENST00000306024 PLCB4Q15147 1175 aa11.9□□□□□ -0.5
LSM3-201ENST00000306024 USP17L6PQ6QN14 398 aa11.9□□□□□ -0.5
LSM3-201ENST00000306024 ANKRD13AQ8IZ07 590 aa11.9□□□□□ -0.5
LSM3-201ENST00000306024 TRIM58Q8NG06 486 aa11.9□□□□□ -0.5
LSM3-201ENST00000306024 TBCKQ8TEA7 893 aa11.9□□□□□ -0.5
LSM3-201ENST00000306024 TAF1DQ9H5J8 278 aaPredicted RBP11.9□□□□□ -0.5
LSM3-201ENST00000306024 NOP53Q9NZM5 478 aaKnown RBP11.9□□□□□ -0.5
LSM3-201ENST00000306024 ESYT3A0FGR9 886 aa11.89□□□□□ -0.51
LSM3-201ENST00000306024 GMNCA6NCL1 334 aa11.89□□□□□ -0.51
LSM3-201ENST00000306024 FAM205CA6NFA0 338 aa11.89□□□□□ -0.51
LSM3-201ENST00000306024 KCNJ18B7U540 433 aa11.89□□□□□ -0.51
LSM3-201ENST00000306024 HGSO14964 777 aaPredicted RBP11.89□□□□□ -0.51
LSM3-201ENST00000306024 CAND2O75155 1236 aa11.89□□□□□ -0.51
LSM3-201ENST00000306024 SNUPNO95149 360 aaKnown RBP11.89□□□□□ -0.51
LSM3-201ENST00000306024 CASP1P29466 404 aa11.89□□□□□ -0.51
LSM3-201ENST00000306024 HOXA13P31271 388 aaPredicted RBP11.89□□□□□ -0.51
LSM3-201ENST00000306024 TXKP42681 527 aa11.89□□□□□ -0.51
LSM3-201ENST00000306024 LACTBP83111 547 aaPredicted RBP11.89□□□□□ -0.51
LSM3-201ENST00000306024 KCNJ12Q14500 433 aa11.89□□□□□ -0.51
LSM3-201ENST00000306024 KCNB1Q14721 858 aa11.89□□□□□ -0.51
LSM3-201ENST00000306024 ENOX2Q16206 610 aaKnown RBP11.89□□□□□ -0.51
LSM3-201ENST00000306024 PKN1Q16512 942 aa11.89□□□□□ -0.51
LSM3-201ENST00000306024 RUFY4Q6ZNE9 571 aa11.89□□□□□ -0.51
LSM3-201ENST00000306024 CYFIP2Q96F07 1278 aa11.89□□□□□ -0.51
LSM3-201ENST00000306024 CDCA5Q96FF9 252 aa11.89□□□□□ -0.51
LSM3-201ENST00000306024 TSGA10Q9BZW7 698 aa11.89□□□□□ -0.51
LSM3-201ENST00000306024 RAVER2Q9HCJ3 691 aaKnown RBP11.89□□□□□ -0.51
LSM3-201ENST00000306024 LUC7LQ9NQ29 371 aaKnown RBP11.89□□□□□ -0.51
LSM3-201ENST00000306024 TLDC2A0PJX2 215 aa11.89□□□□□ -0.51
LSM3-201ENST00000306024 SOCS7O14512 581 aa11.89□□□□□ -0.51
LSM3-201ENST00000306024 WDR46O15213 610 aaKnown RBP11.89□□□□□ -0.51
LSM3-201ENST00000306024 HEXIM1O94992 359 aaKnown RBP11.89□□□□□ -0.51
LSM3-201ENST00000306024 FAM107AO95990 144 aa11.89□□□□□ -0.51
LSM3-201ENST00000306024 ERVK-24P63145 666 aa11.89□□□□□ -0.51
LSM3-201ENST00000306024 PAK1Q13153 545 aa11.89□□□□□ -0.51
LSM3-201ENST00000306024 KRT31Q15323 416 aa11.89□□□□□ -0.51
LSM3-201ENST00000306024 FUKQ8N0W3 1084 aa11.89□□□□□ -0.51
LSM3-201ENST00000306024 TSC22D3Q99576 134 aa11.89□□□□□ -0.51
LSM3-201ENST00000306024 PHF20Q9BVI0 1012 aa11.89□□□□□ -0.51
LSM3-201ENST00000306024 DMGDHQ9UI17 866 aaKnown RBP11.89□□□□□ -0.51
LSM3-201ENST00000306024 HYOU1Q9Y4L1 999 aa11.89□□□□□ -0.51
LSM3-201ENST00000306024 SCN9AQ15858 1988 aa11.89□□□□□ -0.51
LSM3-201ENST00000306024 CNTNAP1P78357 1384 aa11.89□□□□□ -0.51
LSM3-201ENST00000306024 SMIM23A6NLE4 172 aa11.89□□□□□ -0.51
LSM3-201ENST00000306024 CTNNA1P35221 906 aaKnown RBP11.89□□□□□ -0.51
LSM3-201ENST00000306024 KLHL7Q8IXQ5 586 aa11.89□□□□□ -0.51
LSM3-201ENST00000306024 LMBR1Q8WVP7 490 aa11.89□□□□□ -0.51
LSM3-201ENST00000306024 MKL1Q969V6 931 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms