RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 PLPPR4Q7Z2D5 763 aa16.9■□□□□ 0.3
CCDC88B-201ENST00000301897 RNF135Q8IUD6 432 aa16.9■□□□□ 0.3
CCDC88B-201ENST00000301897 CRIPAKQ8N1N5 446 aa16.9■□□□□ 0.3
CCDC88B-201ENST00000301897 SPPL3Q8TCT6 385 aa16.9■□□□□ 0.3
CCDC88B-201ENST00000301897 LINC01599Q8WXQ3 324 aa16.9■□□□□ 0.3
CCDC88B-201ENST00000301897 MSLNLQ96KJ4 702 aa16.9■□□□□ 0.3
CCDC88B-201ENST00000301897 FBXL18Q96ME1 805 aa16.9■□□□□ 0.3
CCDC88B-201ENST00000301897 LRFN2Q9ULH4 789 aa16.9■□□□□ 0.3
CCDC88B-201ENST00000301897 PADI3Q9ULW8 664 aa16.9■□□□□ 0.3
CCDC88B-201ENST00000301897 PCDHA6Q9UN73 950 aa16.9■□□□□ 0.3
CCDC88B-201ENST00000301897 PCDHA8Q9Y5H6 950 aa16.9■□□□□ 0.3
CCDC88B-201ENST00000301897 NFASCO94856 1347 aa16.9■□□□□ 0.3
CCDC88B-201ENST00000301897 LOXHD1Q8IVV2 1947 aa16.9■□□□□ 0.3
CCDC88B-201ENST00000301897 SMIM35A0A1B0GVV1 85 aa16.89■□□□□ 0.29
CCDC88B-201ENST00000301897 SH2B2O14492 632 aaPredicted RBP16.89■□□□□ 0.29
CCDC88B-201ENST00000301897 COASYQ13057 564 aa16.89■□□□□ 0.29
CCDC88B-201ENST00000301897 CAMK1Q14012 370 aa16.89■□□□□ 0.29
CCDC88B-201ENST00000301897 UBE2SQ16763 222 aa16.89■□□□□ 0.29
CCDC88B-201ENST00000301897 SMRP1Q8NCR6 262 aa16.89■□□□□ 0.29
CCDC88B-201ENST00000301897 EDAQ92838 391 aa16.89■□□□□ 0.29
CCDC88B-201ENST00000301897 CELF4Q9BZC1 486 aaKnown RBP16.89■□□□□ 0.29
CCDC88B-201ENST00000301897 AAASQ9NRG9 546 aa16.89■□□□□ 0.29
CCDC88B-201ENST00000301897 KCNH7Q9NS40 1196 aa16.89■□□□□ 0.29
CCDC88B-201ENST00000301897 PKD2L1Q9P0L9 805 aa16.89■□□□□ 0.29
CCDC88B-201ENST00000301897 MUTYHQ9UIF7 546 aa16.89■□□□□ 0.29
CCDC88B-201ENST00000301897 SLC12A7Q9Y666 1083 aa16.89■□□□□ 0.29
CCDC88B-201ENST00000301897 KIAA1671Q9BY89 1806 aa16.89■□□□□ 0.29
CCDC88B-201ENST00000301897 FOSP01100 380 aaPredicted RBP16.88■□□□□ 0.29
CCDC88B-201ENST00000301897 GTF2F1P35269 517 aaKnown RBP eCLIP16.88■□□□□ 0.29
CCDC88B-201ENST00000301897 STAT5BP51692 787 aa16.88■□□□□ 0.29
CCDC88B-201ENST00000301897 UBE3AQ05086 875 aa16.88■□□□□ 0.29
CCDC88B-201ENST00000301897 BMP8AQ7Z5Y6 402 aa16.88■□□□□ 0.29
CCDC88B-201ENST00000301897 RTN4RL1Q86UN2 441 aaPredicted RBP16.88■□□□□ 0.29
CCDC88B-201ENST00000301897 KLHL23Q8NBE8 558 aa16.88■□□□□ 0.29
CCDC88B-201ENST00000301897 PCYT2Q99447 389 aa16.88■□□□□ 0.29
CCDC88B-201ENST00000301897 PRRX2Q99811 253 aa16.88■□□□□ 0.29
CCDC88B-201ENST00000301897 MXRA8Q9BRK3 442 aa16.88■□□□□ 0.29
CCDC88B-201ENST00000301897 PCDHB12Q9Y5F1 795 aa16.88■□□□□ 0.29
CCDC88B-201ENST00000301897 LINC01565O15544 149 aa16.87■□□□□ 0.29
CCDC88B-201ENST00000301897 SARSP49591 514 aaKnown RBP16.87■□□□□ 0.29
CCDC88B-201ENST00000301897 ACTR2P61160 394 aa16.87■□□□□ 0.29
CCDC88B-201ENST00000301897 KRT76Q01546 638 aa16.87■□□□□ 0.29
CCDC88B-201ENST00000301897 PLCB4Q15147 1175 aa16.87■□□□□ 0.29
CCDC88B-201ENST00000301897 PPP1R18Q6NYC8 613 aa16.87■□□□□ 0.29
CCDC88B-201ENST00000301897 TMTC3Q6ZXV5 915 aa16.87■□□□□ 0.29
CCDC88B-201ENST00000301897 HEATR3Q7Z4Q2 680 aa16.87■□□□□ 0.29
CCDC88B-201ENST00000301897 FANCBQ8NB91 859 aa16.87■□□□□ 0.29
CCDC88B-201ENST00000301897 POF1BQ8WVV4 589 aa16.87■□□□□ 0.29
CCDC88B-201ENST00000301897 CDCA3Q99618 268 aaPredicted RBP16.87■□□□□ 0.29
CCDC88B-201ENST00000301897 GLT8D2Q9H1C3 349 aa16.87■□□□□ 0.29
CCDC88B-201ENST00000301897 PCDHB7Q9Y5E2 793 aa16.87■□□□□ 0.29
CCDC88B-201ENST00000301897 CACNA1HO95180 2353 aa16.87■□□□□ 0.29
CCDC88B-201ENST00000301897 CSPG5O95196 566 aa16.86■□□□□ 0.29
CCDC88B-201ENST00000301897 DNAJB1P25685 340 aa16.86■□□□□ 0.29
CCDC88B-201ENST00000301897 NRIP1P48552 1158 aa16.86■□□□□ 0.29
CCDC88B-201ENST00000301897 PAN2Q504Q3 1202 aaKnown RBP16.86■□□□□ 0.29
CCDC88B-201ENST00000301897 CEP55Q53EZ4 464 aa16.86■□□□□ 0.29
CCDC88B-201ENST00000301897 FAM160B1Q5W0V3 765 aa16.86■□□□□ 0.29
CCDC88B-201ENST00000301897 PDE12Q6L8Q7 609 aaKnown RBP16.86■□□□□ 0.29
CCDC88B-201ENST00000301897 MTHFD1LQ6UB35 978 aa16.86■□□□□ 0.29
CCDC88B-201ENST00000301897 SYNE3Q6ZMZ3 975 aa16.86■□□□□ 0.29
CCDC88B-201ENST00000301897 C1orf112Q9NSG2 853 aa16.86■□□□□ 0.29
CCDC88B-201ENST00000301897 DENND3A2RUS2 1198 aa16.85■□□□□ 0.29
CCDC88B-201ENST00000301897 LOC730098B7Z3J9 87 aa16.85■□□□□ 0.29
CCDC88B-201ENST00000301897 hCG_1984214I3L0E3 225 aa16.85■□□□□ 0.29
CCDC88B-201ENST00000301897 HBP1O60381 514 aa16.85■□□□□ 0.29
CCDC88B-201ENST00000301897 ATG7O95352 703 aa16.85■□□□□ 0.29
CCDC88B-201ENST00000301897 SRGAP2BP0DMP2 458 aa16.85■□□□□ 0.29
CCDC88B-201ENST00000301897 TMEM62Q0P6H9 643 aa16.85■□□□□ 0.29
CCDC88B-201ENST00000301897 CBX2Q14781 532 aaPredicted RBP16.85■□□□□ 0.29
CCDC88B-201ENST00000301897 SPOUT1Q5T280 376 aaKnown RBP16.85■□□□□ 0.29
CCDC88B-201ENST00000301897 NIPA1Q7RTP0 329 aa16.85■□□□□ 0.29
CCDC88B-201ENST00000301897 SGMS1Q86VZ5 419 aa16.85■□□□□ 0.29
CCDC88B-201ENST00000301897 CMTR1Q8N1G2 835 aaKnown RBP16.85■□□□□ 0.29
CCDC88B-201ENST00000301897 CCDC82Q8N4S0 544 aa16.85■□□□□ 0.29
CCDC88B-201ENST00000301897 ZNF713Q8N859 430 aaPredicted RBP16.85■□□□□ 0.29
CCDC88B-201ENST00000301897 PHF7Q9BWX1 381 aaPredicted RBP16.85■□□□□ 0.29
CCDC88B-201ENST00000301897 TLE6Q9H808 572 aa16.85■□□□□ 0.29
CCDC88B-201ENST00000301897 RIC8AQ9NPQ8 531 aa16.85■□□□□ 0.29
CCDC88B-201ENST00000301897 RBM28Q9NW13 759 aaKnown RBP16.85■□□□□ 0.29
CCDC88B-201ENST00000301897 CLEC1BQ9P126 229 aa16.85■□□□□ 0.29
CCDC88B-201ENST00000301897 COL1A2P08123 1366 aa16.85■□□□□ 0.29
CCDC88B-201ENST00000301897 RPS6KA5O75582 802 aa16.84■□□□□ 0.29
CCDC88B-201ENST00000301897 ATF7P17544 494 aaPredicted RBP16.84■□□□□ 0.29
CCDC88B-201ENST00000301897 RXRAP19793 462 aa16.84■□□□□ 0.29
CCDC88B-201ENST00000301897 NAPAP54920 295 aa16.84■□□□□ 0.29
CCDC88B-201ENST00000301897 NFX1Q12986 1120 aaKnown RBP16.84■□□□□ 0.29
CCDC88B-201ENST00000301897 TRIM67Q6ZTA4 783 aa16.84■□□□□ 0.29
CCDC88B-201ENST00000301897 ADGRD2Q7Z7M1 963 aa16.84■□□□□ 0.29
CCDC88B-201ENST00000301897 SUGP1Q8IWZ8 645 aaKnown RBP16.84■□□□□ 0.29
CCDC88B-201ENST00000301897 MICAL1Q8TDZ2 1067 aa16.84■□□□□ 0.29
CCDC88B-201ENST00000301897 TRAPPC12Q8WVT3 735 aa16.84■□□□□ 0.29
CCDC88B-201ENST00000301897 ZBTB10Q96DT7 871 aa16.84■□□□□ 0.29
CCDC88B-201ENST00000301897 YTHDC1Q96MU7 727 aaKnown RBP16.84■□□□□ 0.29
CCDC88B-201ENST00000301897 TMX1Q9H3N1 280 aa16.84■□□□□ 0.29
CCDC88B-201ENST00000301897 TLR9Q9NR96 1032 aa16.84■□□□□ 0.29
CCDC88B-201ENST00000301897 FNDC1Q4ZHG4 1894 aaPredicted RBP16.84■□□□□ 0.29
CCDC88B-201ENST00000301897 IGKV6D-21A0A0A0MT36 114 aa16.83■□□□□ 0.28
CCDC88B-201ENST00000301897 hCG_1642624A0A1W2PR95 340 aa16.83■□□□□ 0.28
CCDC88B-201ENST00000301897 TMEM221A6NGB7 291 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms