RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 SPOPLQ6IQ16 392 aa10.61□□□□□ -0.71
COL6A3-201ENST00000295550 SGMS1Q86VZ5 419 aa10.61□□□□□ -0.71
COL6A3-201ENST00000295550 SLC17A8Q8NDX2 589 aa10.61□□□□□ -0.71
COL6A3-201ENST00000295550 ATP6V0A1Q93050 837 aa10.61□□□□□ -0.71
COL6A3-201ENST00000295550 DACH2Q96NX9 599 aa10.61□□□□□ -0.71
COL6A3-201ENST00000295550 LGALS16A8MUM7 142 aa10.61□□□□□ -0.71
COL6A3-201ENST00000295550 CAPN9O14815 690 aa10.61□□□□□ -0.71
COL6A3-201ENST00000295550 POLD1P28340 1107 aa10.61□□□□□ -0.71
COL6A3-201ENST00000295550 CAPRIN2Q6IMN6 1127 aaKnown RBP10.61□□□□□ -0.71
COL6A3-201ENST00000295550 ZNF711Q9Y462 761 aa10.61□□□□□ -0.71
COL6A3-201ENST00000295550 PLCG1P19174 1290 aa10.61□□□□□ -0.71
COL6A3-201ENST00000295550 CASP8Q14790 479 aa10.61□□□□□ -0.71
COL6A3-201ENST00000295550 NOD1Q9Y239 953 aa10.61□□□□□ -0.71
COL6A3-201ENST00000295550 KRT14P02533 472 aa10.61□□□□□ -0.71
COL6A3-201ENST00000295550 HDLBPQ00341 1268 aaKnown RBP10.61□□□□□ -0.71
COL6A3-201ENST00000295550 SGO2Q562F6 1265 aa10.61□□□□□ -0.71
COL6A3-201ENST00000295550 HIBCHQ6NVY1 386 aaPredicted RBP10.61□□□□□ -0.71
COL6A3-201ENST00000295550 OLFM3Q96PB7 478 aa10.61□□□□□ -0.71
COL6A3-201ENST00000295550 NWD1Q149M9 1564 aa10.61□□□□□ -0.71
COL6A3-201ENST00000295550 UTYO14607 1347 aa10.6□□□□□ -0.71
COL6A3-201ENST00000295550 ECEL1O95672 775 aa10.6□□□□□ -0.71
COL6A3-201ENST00000295550 FAM102BQ5T8I3 360 aa10.6□□□□□ -0.71
COL6A3-201ENST00000295550 ZC3H15Q8WU90 426 aaKnown RBP10.6□□□□□ -0.71
COL6A3-201ENST00000295550 ANKRD7Q92527 254 aa10.6□□□□□ -0.71
COL6A3-201ENST00000295550 STRIP2Q9ULQ0 834 aa10.6□□□□□ -0.71
COL6A3-201ENST00000295550 H0Y3Z8 333 aa10.6□□□□□ -0.71
COL6A3-201ENST00000295550 PPP1R12AO14974 1030 aaPredicted RBP10.6□□□□□ -0.71
COL6A3-201ENST00000295550 CYP27B1O15528 508 aa10.6□□□□□ -0.71
COL6A3-201ENST00000295550 HLA-DPA1P20036 260 aa10.6□□□□□ -0.71
COL6A3-201ENST00000295550 BRD2P25440 801 aaKnown RBP10.6□□□□□ -0.71
COL6A3-201ENST00000295550 EMBQ6PCB8 327 aa10.6□□□□□ -0.71
COL6A3-201ENST00000295550 DPP8Q6V1X1 898 aaPredicted RBP10.6□□□□□ -0.71
COL6A3-201ENST00000295550 FMO2Q99518 471 aa10.6□□□□□ -0.71
COL6A3-201ENST00000295550 YIPF3Q9GZM5 350 aa10.6□□□□□ -0.71
COL6A3-201ENST00000295550 EXOC3L4Q17RC7 722 aa10.6□□□□□ -0.71
COL6A3-201ENST00000295550 ZNF229Q9UJW7 825 aa10.6□□□□□ -0.71
COL6A3-201ENST00000295550 SLC13A4Q9UKG4 626 aa10.6□□□□□ -0.71
COL6A3-201ENST00000295550 ZBTB1Q9Y2K1 713 aa10.6□□□□□ -0.71
COL6A3-201ENST00000295550 KIF28PB7ZC32 967 aa10.6□□□□□ -0.71
COL6A3-201ENST00000295550 MCF2LO15068 1137 aa10.6□□□□□ -0.71
COL6A3-201ENST00000295550 SEMA3FQ13275 785 aa10.6□□□□□ -0.71
COL6A3-201ENST00000295550 C1orf146Q5VVC0 180 aa10.6□□□□□ -0.71
COL6A3-201ENST00000295550 SESTD1Q86VW0 696 aa10.6□□□□□ -0.71
COL6A3-201ENST00000295550 SIGLEC1Q9BZZ2 1709 aa10.6□□□□□ -0.71
COL6A3-201ENST00000295550 COBLO75128 1261 aa10.6□□□□□ -0.71
COL6A3-201ENST00000295550 GAP43P17677 238 aa10.6□□□□□ -0.71
COL6A3-201ENST00000295550 GRM1Q13255 1194 aa10.6□□□□□ -0.71
COL6A3-201ENST00000295550 CUL1Q13616 776 aa10.6□□□□□ -0.71
COL6A3-201ENST00000295550 PTPN21Q16825 1174 aa10.6□□□□□ -0.71
COL6A3-201ENST00000295550 BRDTQ58F21 947 aaPredicted RBP10.6□□□□□ -0.71
COL6A3-201ENST00000295550 RNF169Q8NCN4 708 aa10.6□□□□□ -0.71
COL6A3-201ENST00000295550 DLATP10515 647 aaKnown RBP10.6□□□□□ -0.71
COL6A3-201ENST00000295550 KPNA2P52292 529 aaKnown RBP10.6□□□□□ -0.71
COL6A3-201ENST00000295550 PMS1P54277 932 aaKnown RBP10.6□□□□□ -0.71
COL6A3-201ENST00000295550 MAGOHBQ96A72 148 aaKnown RBP10.6□□□□□ -0.71
COL6A3-201ENST00000295550 SPDYE2BA6NHP3 402 aa10.6□□□□□ -0.71
COL6A3-201ENST00000295550 ZRANB2O95218 330 aaKnown RBP eCLIP10.6□□□□□ -0.71
COL6A3-201ENST00000295550 SPDYE6P0CI01 402 aa10.6□□□□□ -0.71
COL6A3-201ENST00000295550 GOLGA8HP0CJ92 632 aa10.6□□□□□ -0.71
COL6A3-201ENST00000295550 CCNE1P24864 410 aa10.6□□□□□ -0.71
COL6A3-201ENST00000295550 GPATCH4Q5T3I0 446 aaKnown RBP10.6□□□□□ -0.71
COL6A3-201ENST00000295550 PDXDC1Q6P996 788 aa10.6□□□□□ -0.71
COL6A3-201ENST00000295550 FIS1Q9Y3D6 152 aa10.6□□□□□ -0.71
COL6A3-201ENST00000295550 LOC102724428A0A0B4J2F2 783 aa10.6□□□□□ -0.71
COL6A3-201ENST00000295550 CTIFO43310 598 aaKnown RBP10.6□□□□□ -0.71
COL6A3-201ENST00000295550 PLTPP55058 493 aa10.6□□□□□ -0.71
COL6A3-201ENST00000295550 SIK1P57059 783 aa10.6□□□□□ -0.71
COL6A3-201ENST00000295550 ORC2Q13416 577 aaPredicted RBP10.6□□□□□ -0.71
COL6A3-201ENST00000295550 CYB5R4Q7L1T6 521 aa10.6□□□□□ -0.71
COL6A3-201ENST00000295550 NCLNQ969V3 563 aa10.6□□□□□ -0.71
COL6A3-201ENST00000295550 DTNBP1Q96EV8 351 aa10.6□□□□□ -0.71
COL6A3-201ENST00000295550 BSDC1Q9NW68 430 aaPredicted RBP10.6□□□□□ -0.71
COL6A3-201ENST00000295550 C3P01024 1663 aa10.59□□□□□ -0.71
COL6A3-201ENST00000295550 PLEKHG2Q9H7P9 1386 aa10.59□□□□□ -0.71
COL6A3-201ENST00000295550 PPP4R3CPQ6ZMV5 832 aa10.59□□□□□ -0.71
COL6A3-201ENST00000295550 STOX1Q6ZVD7 989 aa10.59□□□□□ -0.71
COL6A3-201ENST00000295550 METTL13Q8N6R0 699 aa10.59□□□□□ -0.71
COL6A3-201ENST00000295550 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.59□□□□□ -0.71
COL6A3-201ENST00000295550 ATP6V1E2Q96A05 226 aa10.59□□□□□ -0.71
COL6A3-201ENST00000295550 OLA1Q9NTK5 396 aaKnown RBP10.59□□□□□ -0.71
COL6A3-201ENST00000295550 PCDHA13Q9Y5I0 950 aa10.59□□□□□ -0.71
COL6A3-201ENST00000295550 SYNJ2BP-COX16A0A087WUM0 186 aa10.59□□□□□ -0.71
COL6A3-201ENST00000295550 WDR91A4D1P6 747 aa10.59□□□□□ -0.71
COL6A3-201ENST00000295550 TMEM232C9JQI7 657 aa10.59□□□□□ -0.71
COL6A3-201ENST00000295550 ATP5HO75947 161 aa10.59□□□□□ -0.71
COL6A3-201ENST00000295550 ECM2O94769 699 aaPredicted RBP10.59□□□□□ -0.71
COL6A3-201ENST00000295550 SERPINB10P48595 397 aa10.59□□□□□ -0.71
COL6A3-201ENST00000295550 HSPA2P54652 639 aa10.59□□□□□ -0.71
COL6A3-201ENST00000295550 MRPS15P82914 257 aaKnown RBP10.59□□□□□ -0.71
COL6A3-201ENST00000295550 MYL7Q01449 175 aa10.59□□□□□ -0.71
COL6A3-201ENST00000295550 MYLK4Q86YV6 388 aaPredicted RBP10.59□□□□□ -0.71
COL6A3-201ENST00000295550 PLA2G12BQ9BX93 195 aa10.59□□□□□ -0.71
COL6A3-201ENST00000295550 COX16Q9P0S2 106 aa10.59□□□□□ -0.71
COL6A3-201ENST00000295550 NINQ8N4C6 2090 aa10.59□□□□□ -0.71
COL6A3-201ENST00000295550 ADAMTS13Q76LX8 1427 aa10.59□□□□□ -0.71
COL6A3-201ENST00000295550 MROH7-TTC4A0A0A0MT08 1334 aa10.59□□□□□ -0.71
COL6A3-201ENST00000295550 CXCR5P32302 372 aa10.59□□□□□ -0.71
COL6A3-201ENST00000295550 TMEM60Q9H2L4 133 aa10.59□□□□□ -0.71
COL6A3-201ENST00000295550 GPHNQ9NQX3 736 aaPredicted RBP10.59□□□□□ -0.71
COL6A3-201ENST00000295550 MYO1CO00159 1063 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms