RNA–Protein interactions for RNA: ENST00000274071.6

PDGFC-201, Transcript of platelet derived growth factor C, humanhuman

TSL 1 (best)

Gene PDGFC, Length 2,987 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-201ENST00000274071 AGPAT5Q9NUQ2 364 aa10□□□□□ -0.81
PDGFC-201ENST00000274071 INTS9Q9NV88 658 aaKnown RBP10□□□□□ -0.81
PDGFC-201ENST00000274071 TUBA8Q9NY65 449 aaPredicted RBP10□□□□□ -0.81
PDGFC-201ENST00000274071 IQSEC3Q9UPP2 1182 aaPredicted RBP10□□□□□ -0.81
PDGFC-201ENST00000274071 PA2G4Q9UQ80 394 aaKnown RBP10□□□□□ -0.81
PDGFC-201ENST00000274071 STK24Q9Y6E0 443 aa10□□□□□ -0.81
PDGFC-201ENST00000274071 MYH10P35580 1976 aa10□□□□□ -0.81
PDGFC-201ENST00000274071 MYH7BA7E2Y1 1941 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 KCNQ3O43525 872 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 ACTN4O43707 911 aaKnown RBP9.99□□□□□ -0.81
PDGFC-201ENST00000274071 SUN1O94901 812 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 AFPP02771 609 aaKnown RBP9.99□□□□□ -0.81
PDGFC-201ENST00000274071 LYNP07948 512 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 PORP16435 677 aaPredicted RBP9.99□□□□□ -0.81
PDGFC-201ENST00000274071 RXRBP28702 533 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 CASP1P29466 404 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 SKIV2L2P42285 1042 aaKnown RBP9.99□□□□□ -0.81
PDGFC-201ENST00000274071 IFNAR2P48551 515 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 OCRLQ01968 901 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 CFAP157Q5JU67 520 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 SNX30Q5VWJ9 437 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 NSRP1Q9H0G5 558 aaKnown RBP9.99□□□□□ -0.81
PDGFC-201ENST00000274071 TAOK3Q9H2K8 898 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 KIAA1522Q9P206 1035 aaPredicted RBP9.99□□□□□ -0.81
PDGFC-201ENST00000274071 HESX1Q9UBX0 185 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 RABL2BQ9UNT1 228 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 NCAPD2Q15021 1401 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 MED1Q15648 1581 aaPredicted RBP9.99□□□□□ -0.81
PDGFC-201ENST00000274071 RNMTO43148 476 aaKnown RBP9.99□□□□□ -0.81
PDGFC-201ENST00000274071 PDGFRBP09619 1106 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 GNAT2P19087 354 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 KPNB1Q14974 876 aaKnown RBP9.99□□□□□ -0.81
PDGFC-201ENST00000274071 WASHC4Q2M389 1173 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 SH3D19Q5HYK7 790 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 PHLDB3Q6NSJ2 640 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 SLC2A7Q6PXP3 512 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 STK11IPQ8N1F8 1099 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 EIF1ADQ8N9N8 165 aaKnown RBP9.99□□□□□ -0.81
PDGFC-201ENST00000274071 NRG4Q8WWG1 115 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 IRGQQ8WZA9 623 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 MPP4Q96JB8 637 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 DNAJC1Q96KC8 554 aaKnown RBP9.99□□□□□ -0.81
PDGFC-201ENST00000274071 AIFM3Q96NN9 605 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 SETDB2Q96T68 719 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 FAM114A2Q9NRY5 505 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 ITM2BQ9Y287 266 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 MROH7Q68CQ1 1323 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 ASMTLO95671 621 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 MYBP10242 640 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 VAV1P15498 845 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 SERPINB3P29508 390 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 KANK3Q6NY19 840 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 RIBC1Q8N443 379 aaPredicted RBP9.99□□□□□ -0.81
PDGFC-201ENST00000274071 TBC1D16Q8TBP0 767 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 NAT14Q8WUY8 206 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 CENPKQ9BS16 269 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 TCHPQ9BT92 498 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 DCLRE1BQ9H816 532 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 STOML1Q9UBI4 398 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 RNF14Q9UBS8 474 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 SALL4Q9UJQ4 1053 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 TBC1D30Q9Y2I9 924 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 TDRKHQ9Y2W6 561 aaKnown RBP9.99□□□□□ -0.81
PDGFC-201ENST00000274071 TIMM22Q9Y584 194 aa9.99□□□□□ -0.81
PDGFC-201ENST00000274071 A0A0G2JLW4 131 aa9.98□□□□□ -0.81
PDGFC-201ENST00000274071 NUTM2BA6NNL0 878 aaPredicted RBP9.98□□□□□ -0.81
PDGFC-201ENST00000274071 NUTM2EB1AL46 878 aaPredicted RBP9.98□□□□□ -0.81
PDGFC-201ENST00000274071 KCNJ18B7U540 433 aa9.98□□□□□ -0.81
PDGFC-201ENST00000274071 PRPF3O43395 683 aaKnown RBP9.98□□□□□ -0.81
PDGFC-201ENST00000274071 GJB6O95452 261 aa9.98□□□□□ -0.81
PDGFC-201ENST00000274071 TRIM21P19474 475 aaKnown RBP9.98□□□□□ -0.81
PDGFC-201ENST00000274071 HALP42357 657 aa9.98□□□□□ -0.81
PDGFC-201ENST00000274071 GALK1P51570 392 aa9.98□□□□□ -0.81
PDGFC-201ENST00000274071 RNASE9P60153 205 aaKnown RBP9.98□□□□□ -0.81
PDGFC-201ENST00000274071 KCNJ12Q14500 433 aa9.98□□□□□ -0.81
PDGFC-201ENST00000274071 ANKLE1Q8NAG6 615 aa9.98□□□□□ -0.81
PDGFC-201ENST00000274071 LRRC8CQ8TDW0 803 aa9.98□□□□□ -0.81
PDGFC-201ENST00000274071 DENND2DQ9H6A0 471 aaPredicted RBP9.98□□□□□ -0.81
PDGFC-201ENST00000274071 CTNND2Q9UQB3 1225 aa9.98□□□□□ -0.81
PDGFC-201ENST00000274071 MAP3K15Q6ZN16 1313 aa9.98□□□□□ -0.81
PDGFC-201ENST00000274071 LMO7Q8WWI1 1683 aa9.98□□□□□ -0.81
PDGFC-201ENST00000274071 FAM208AQ9UK61 1670 aaKnown RBP9.98□□□□□ -0.81
PDGFC-201ENST00000274071 GOLGA8AA7E2F4 631 aa9.98□□□□□ -0.81
PDGFC-201ENST00000274071 POTEJP0CG39 1038 aa9.98□□□□□ -0.81
PDGFC-201ENST00000274071 IGHMBP2P38935 993 aaKnown RBP9.98□□□□□ -0.81
PDGFC-201ENST00000274071 RHBDL3P58872 404 aa9.98□□□□□ -0.81
PDGFC-201ENST00000274071 SPA17Q15506 151 aa9.98□□□□□ -0.81
PDGFC-201ENST00000274071 HLFQ16534 295 aa9.98□□□□□ -0.81
PDGFC-201ENST00000274071 KCTD19Q17RG1 926 aaPredicted RBP9.98□□□□□ -0.81
PDGFC-201ENST00000274071 CERKLQ49MI3 558 aaPredicted RBP9.98□□□□□ -0.81
PDGFC-201ENST00000274071 KLHDC7AQ5VTJ3 777 aa9.98□□□□□ -0.81
PDGFC-201ENST00000274071 USP49Q70CQ1 688 aa9.98□□□□□ -0.81
PDGFC-201ENST00000274071 MB21D1Q8N884 522 aa9.98□□□□□ -0.81
PDGFC-201ENST00000274071 TUBGCP5Q96RT8 1024 aa9.98□□□□□ -0.81
PDGFC-201ENST00000274071 OSBPL10Q9BXB5 764 aa9.98□□□□□ -0.81
PDGFC-201ENST00000274071 FGFR1OP2Q9NVK5 253 aa9.98□□□□□ -0.81
PDGFC-201ENST00000274071 PXDNQ92626 1479 aa9.98□□□□□ -0.81
PDGFC-201ENST00000274071 MYH1P12882 1939 aa9.97□□□□□ -0.81
PDGFC-201ENST00000274071 KDM4FA0A1W2PPD8 638 aa9.97□□□□□ -0.81
PDGFC-201ENST00000274071 GSTT2P0CG29 244 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms