RNA–Protein interactions for RNA: ENST00000264555.9

PHRF1-201, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-201ENST00000264555 PPP4CP60510 307 aa18.12■□□□□ 0.49
PHRF1-201ENST00000264555 EIF3CQ99613 913 aaKnown RBP18.12■□□□□ 0.49
PHRF1-201ENST00000264555 GPR75-ASB3A0A0A6YYF3 556 aa18.12■□□□□ 0.49
PHRF1-201ENST00000264555 TTBK2Q6IQ55 1244 aa18.12■□□□□ 0.49
PHRF1-201ENST00000264555 ANKRD42Q8N9B4 389 aa18.12■□□□□ 0.49
PHRF1-201ENST00000264555 BANK1Q8NDB2 785 aa18.12■□□□□ 0.49
PHRF1-201ENST00000264555 HAUS1Q96CS2 278 aa18.12■□□□□ 0.49
PHRF1-201ENST00000264555 STIM2Q9P246 746 aa18.12■□□□□ 0.49
PHRF1-201ENST00000264555 FAN1Q9Y2M0 1017 aa18.12■□□□□ 0.49
PHRF1-201ENST00000264555 ZNF233A6NK53 670 aa18.12■□□□□ 0.49
PHRF1-201ENST00000264555 CA8P35219 290 aa18.12■□□□□ 0.49
PHRF1-201ENST00000264555 VSIG1Q86XK7 387 aa18.12■□□□□ 0.49
PHRF1-201ENST00000264555 CCDC97Q96F63 343 aaPredicted RBP18.12■□□□□ 0.49
PHRF1-201ENST00000264555 EDEM3Q9BZQ6 932 aa18.12■□□□□ 0.49
PHRF1-201ENST00000264555 KRT76Q01546 638 aa18.12■□□□□ 0.49
PHRF1-201ENST00000264555 GLE1Q53GS7 698 aaKnown RBP18.12■□□□□ 0.49
PHRF1-201ENST00000264555 SLFN12LQ6IEE8 588 aa18.12■□□□□ 0.49
PHRF1-201ENST00000264555 FBXL16Q8N461 479 aa18.12■□□□□ 0.49
PHRF1-201ENST00000264555 RNF10Q8N5U6 811 aaKnown RBP18.12■□□□□ 0.49
PHRF1-201ENST00000264555 PRPF38AQ8NAV1 312 aaKnown RBP18.12■□□□□ 0.49
PHRF1-201ENST00000264555 WHAMMQ8TF30 809 aa18.12■□□□□ 0.49
PHRF1-201ENST00000264555 DNAJC5Q9H3Z4 198 aa18.12■□□□□ 0.49
PHRF1-201ENST00000264555 RAVER2Q9HCJ3 691 aaKnown RBP18.12■□□□□ 0.49
PHRF1-201ENST00000264555 NYAP2Q9P242 653 aa18.12■□□□□ 0.49
PHRF1-201ENST00000264555 PTPN22Q9Y2R2 807 aa18.12■□□□□ 0.49
PHRF1-201ENST00000264555 FER1L4A9Z1Z3 1794 aa18.11■□□□□ 0.49
PHRF1-201ENST00000264555 SHPRHQ149N8 1683 aa18.11■□□□□ 0.49
PHRF1-201ENST00000264555 GOLGA8IPA6NC78 632 aa18.11■□□□□ 0.49
PHRF1-201ENST00000264555 GOLGA8JA6NMD2 632 aa18.11■□□□□ 0.49
PHRF1-201ENST00000264555 P4HBP07237 508 aaKnown RBP18.11■□□□□ 0.49
PHRF1-201ENST00000264555 NR1I3Q14994 352 aa18.11■□□□□ 0.49
PHRF1-201ENST00000264555 XXYLT1Q8NBI6 393 aa18.11■□□□□ 0.49
PHRF1-201ENST00000264555 MGARPQ8TDB4 240 aa18.11■□□□□ 0.49
PHRF1-201ENST00000264555 ZMYND12Q9H0C1 365 aa18.11■□□□□ 0.49
PHRF1-201ENST00000264555 KCTD16Q68DU8 428 aa18.11■□□□□ 0.49
PHRF1-201ENST00000264555 CASC4Q6P4E1 433 aa18.11■□□□□ 0.49
PHRF1-201ENST00000264555 PSMD1Q99460 953 aa18.11■□□□□ 0.49
PHRF1-201ENST00000264555 ITIH6Q6UXX5 1313 aa18.11■□□□□ 0.49
PHRF1-201ENST00000264555 PALMO75781 387 aa18.11■□□□□ 0.49
PHRF1-201ENST00000264555 ALS2CLQ60I27 953 aa18.11■□□□□ 0.49
PHRF1-201ENST00000264555 KAZNQ674X7 775 aa18.11■□□□□ 0.49
PHRF1-201ENST00000264555 CACNA2D3Q8IZS8 1091 aa18.11■□□□□ 0.49
PHRF1-201ENST00000264555 MCPH1Q8NEM0 835 aa18.11■□□□□ 0.49
PHRF1-201ENST00000264555 GABPB2Q8TAK5 448 aaPredicted RBP18.11■□□□□ 0.49
PHRF1-201ENST00000264555 SPC25Q9HBM1 224 aa18.11■□□□□ 0.49
PHRF1-201ENST00000264555 PDHBP11177 359 aa18.11■□□□□ 0.49
PHRF1-201ENST00000264555 PTPAQ15257 358 aa18.11■□□□□ 0.49
PHRF1-201ENST00000264555 E4F1Q66K89 784 aaPredicted RBP18.11■□□□□ 0.49
PHRF1-201ENST00000264555 EIF2AK1Q9BQI3 630 aaKnown RBP18.11■□□□□ 0.49
PHRF1-201ENST00000264555 K7ERI5 159 aa18.1■□□□□ 0.49
PHRF1-201ENST00000264555 SARNPP82979 210 aaKnown RBP18.1■□□□□ 0.49
PHRF1-201ENST00000264555 GFPT1Q06210 699 aaPredicted RBP18.1■□□□□ 0.49
PHRF1-201ENST00000264555 SGO2Q562F6 1265 aa18.1■□□□□ 0.49
PHRF1-201ENST00000264555 CDC42EP5Q6NZY7 148 aa18.1■□□□□ 0.49
PHRF1-201ENST00000264555 EMBQ6PCB8 327 aa18.1■□□□□ 0.49
PHRF1-201ENST00000264555 CCDC125Q86Z20 511 aa18.1■□□□□ 0.49
PHRF1-201ENST00000264555 CCDC13Q8IYE1 715 aa18.1■□□□□ 0.49
PHRF1-201ENST00000264555 ATF5Q9Y2D1 282 aaPredicted RBP18.1■□□□□ 0.49
PHRF1-201ENST00000264555 ARL1P40616 181 aaPredicted RBP18.1■□□□□ 0.49
PHRF1-201ENST00000264555 ATP11AP98196 1134 aa18.1■□□□□ 0.49
PHRF1-201ENST00000264555 IPO5O00410 1097 aaKnown RBP18.1■□□□□ 0.49
PHRF1-201ENST00000264555 ECEL1O95672 775 aa18.1■□□□□ 0.49
PHRF1-201ENST00000264555 RIOK1Q9BRS2 568 aaKnown RBP18.1■□□□□ 0.49
PHRF1-201ENST00000264555 HOXC10Q9NYD6 342 aa18.1■□□□□ 0.49
PHRF1-201ENST00000264555 DIS3Q9Y2L1 958 aaKnown RBP18.1■□□□□ 0.49
PHRF1-201ENST00000264555 SFNP31947 248 aa18.1■□□□□ 0.49
PHRF1-201ENST00000264555 SURF1Q15526 300 aa18.1■□□□□ 0.49
PHRF1-201ENST00000264555 CCDC188H7C350 402 aa18.09■□□□□ 0.49
PHRF1-201ENST00000264555 QARSP47897 775 aaKnown RBP18.09■□□□□ 0.49
PHRF1-201ENST00000264555 IREB2P48200 963 aaKnown RBP18.09■□□□□ 0.49
PHRF1-201ENST00000264555 GKAP1Q5VSY0 366 aaPredicted RBP18.09■□□□□ 0.49
PHRF1-201ENST00000264555 MAP7D3Q8IWC1 876 aa18.09■□□□□ 0.49
PHRF1-201ENST00000264555 UHMK1Q8TAS1 419 aaKnown RBP18.09■□□□□ 0.49
PHRF1-201ENST00000264555 ZNF277Q9NRM2 450 aaPredicted RBP18.09■□□□□ 0.49
PHRF1-201ENST00000264555 I3L4J1 428 aa18.09■□□□□ 0.49
PHRF1-201ENST00000264555 SLC26A4O43511 780 aa18.09■□□□□ 0.49
PHRF1-201ENST00000264555 PLTPP55058 493 aa18.09■□□□□ 0.49
PHRF1-201ENST00000264555 RBM43Q6ZSC3 357 aaKnown RBP18.09■□□□□ 0.49
PHRF1-201ENST00000264555 DPP9Q86TI2 863 aa18.09■□□□□ 0.49
PHRF1-201ENST00000264555 AKT3Q9Y243 479 aa18.09■□□□□ 0.49
PHRF1-201ENST00000264555 IRX5P78411 483 aaPredicted RBP18.09■□□□□ 0.49
PHRF1-201ENST00000264555 MRFAP1Q9Y605 127 aa18.09■□□□□ 0.49
PHRF1-201ENST00000264555 LDHAP00338 332 aaKnown RBP18.09■□□□□ 0.49
PHRF1-201ENST00000264555 KLRK1P26718 216 aa18.09■□□□□ 0.49
PHRF1-201ENST00000264555 TFAMQ00059 246 aaKnown RBP18.09■□□□□ 0.49
PHRF1-201ENST00000264555 NSUN6Q8TEA1 469 aaKnown RBP18.09■□□□□ 0.49
PHRF1-201ENST00000264555 EXOC4Q96A65 974 aa18.09■□□□□ 0.49
PHRF1-201ENST00000264555 SRGAP2O75044 1071 aa18.09■□□□□ 0.49
PHRF1-201ENST00000264555 SLC7A5Q01650 507 aa18.09■□□□□ 0.49
PHRF1-201ENST00000264555 CTAGE3PQ8IX95 158 aa18.09■□□□□ 0.49
PHRF1-201ENST00000264555 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.09■□□□□ 0.49
PHRF1-201ENST00000264555 TLR3O15455 904 aaKnown RBP18.08■□□□□ 0.49
PHRF1-201ENST00000264555 ENTPD3O75355 529 aa18.08■□□□□ 0.49
PHRF1-201ENST00000264555 EYA4O95677 639 aa18.08■□□□□ 0.49
PHRF1-201ENST00000264555 FDX1P10109 184 aa18.08■□□□□ 0.49
PHRF1-201ENST00000264555 CUL1Q13616 776 aa18.08■□□□□ 0.49
PHRF1-201ENST00000264555 GPATCH11Q8N954 259 aa18.08■□□□□ 0.49
PHRF1-201ENST00000264555 ATP6V0A4Q9HBG4 840 aa18.08■□□□□ 0.49
PHRF1-201ENST00000264555 KIAA1586Q9HCI6 787 aa18.08■□□□□ 0.49
PHRF1-201ENST00000264555 FRMD5Q7Z6J6 570 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms