RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 ARL4CP56559 192 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 ZNF658Q5TYW1 1059 aaPredicted RBP6.5□□□□□ -1.37
VPS13D-201ENST00000011700 ARHGEF16Q5VV41 709 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 RCSD1Q6JBY9 416 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 LRRC8EQ6NSJ5 796 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 MEIS3Q99687 375 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 SLITRK6Q9H5Y7 841 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 UBA2Q9UBT2 640 aaPredicted RBP6.5□□□□□ -1.37
VPS13D-201ENST00000011700 HPCAL4Q9UM19 191 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 ANKRD26Q9UPS8 1709 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 PLEKHG3A1L390 1219 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 AFPP02771 609 aaKnown RBP6.5□□□□□ -1.37
VPS13D-201ENST00000011700 AARSP49588 968 aaKnown RBP eCLIP6.5□□□□□ -1.37
VPS13D-201ENST00000011700 SKOR1P84550 965 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 OCRLQ01968 901 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 TP53BP2Q13625 1128 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 PTK2BQ14289 1009 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 ZNF790Q6PG37 636 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 KCNV1Q6PIU1 500 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 ZNF839A8K0R7 811 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 F6X3S4 739 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 NVLO15381 856 aaKnown RBP6.5□□□□□ -1.37
VPS13D-201ENST00000011700 ORC4O43929 436 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 TNFAIP2Q03169 654 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 DAB2IPQ5VWQ8 1189 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 GPBP1Q86WP2 473 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 SPATA5Q8NB90 893 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 PALMDQ9NP74 551 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 ATP10AO60312 1499 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 TK2O00142 265 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 TTLL1O95922 423 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 RPN1P04843 607 aaKnown RBP6.5□□□□□ -1.37
VPS13D-201ENST00000011700 DR1Q01658 176 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 CNGA3Q16281 694 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 CENPPQ6IPU0 288 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 TSPAN17Q96FV3 270 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 ACAP3Q96P50 834 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 FRMD8P1Q9BZ68 369 aaPredicted RBP6.5□□□□□ -1.37
VPS13D-201ENST00000011700 ZBTB3Q9H5J0 574 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 RPRD1BQ9NQG5 326 aaKnown RBP6.5□□□□□ -1.37
VPS13D-201ENST00000011700 TOMM70O94826 608 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 GUCY2CP25092 1073 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 INPP5AQ14642 412 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 SARM1Q6SZW1 724 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 PIK3AP1Q6ZUJ8 805 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 PBXIP1Q96AQ6 731 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 FAM193BQ96PV7 902 aaPredicted RBP6.5□□□□□ -1.37
VPS13D-201ENST00000011700 CEP44Q9C0F1 390 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 EFCAB6Q5THR3 1501 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 STXBP3O00186 592 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 HNRNPDLO14979 420 aaKnown RBP6.5□□□□□ -1.37
VPS13D-201ENST00000011700 CHRNA3P32297 505 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 GUCY1A3Q02108 690 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 RUNX1T1Q06455 604 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 LRMPQ12912 555 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 ADAM9Q13443 819 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 CABP7Q86V35 215 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 NCAPG2Q86XI2 1143 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 OSBPL3Q9H4L5 887 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 TOPORSQ9NS56 1045 aaPredicted RBP6.5□□□□□ -1.37
VPS13D-201ENST00000011700 STK36Q9NRP7 1315 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 MYO7AQ13402 2215 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 ZBTB22O15209 634 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 CDC27P30260 824 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 NFIAQ12857 509 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 MIS18BP1Q6P0N0 1132 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 C1orf228Q6PIY5 440 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 TRIM8Q9BZR9 551 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 BICC1Q9H694 974 aaKnown RBP6.49□□□□□ -1.37
VPS13D-201ENST00000011700 GCNT4Q9P109 453 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 GTPBP10A4D1E9 387 aaKnown RBP6.49□□□□□ -1.37
VPS13D-201ENST00000011700 BAG2O95816 211 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 RWDD2BP57060 319 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 MRPS35P82673 323 aaKnown RBP6.49□□□□□ -1.37
VPS13D-201ENST00000011700 SFSWAPQ12872 951 aaKnown RBP6.49□□□□□ -1.37
VPS13D-201ENST00000011700 IFT88Q13099 833 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 AP3B2Q13367 1082 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 SLC39A14Q15043 492 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 PCYOX1LQ8NBM8 494 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 ZNF555Q8NEP9 628 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 XPO4Q9C0E2 1151 aaKnown RBP6.49□□□□□ -1.37
VPS13D-201ENST00000011700 DYNC1LI1Q9Y6G9 523 aaKnown RBP6.49□□□□□ -1.37
VPS13D-201ENST00000011700 MT-ND3P03897 115 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 HOXC8P31273 242 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 MMP14P50281 582 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 MYL7Q01449 175 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 CAPRIN2Q6IMN6 1127 aaKnown RBP6.49□□□□□ -1.37
VPS13D-201ENST00000011700 ATP6V1E2Q96A05 226 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 FARP1Q9Y4F1 1045 aaPredicted RBP6.49□□□□□ -1.37
VPS13D-201ENST00000011700 HGSO14964 777 aaPredicted RBP6.49□□□□□ -1.37
VPS13D-201ENST00000011700 PRPSAP2O60256 369 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 VAMP4O75379 141 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 SLC1A1P43005 524 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 MICALL2Q8IY33 904 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 ABI1Q8IZP0 508 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.49□□□□□ -1.37
VPS13D-201ENST00000011700 MYO3BQ8WXR4 1341 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 MAPK4P31152 587 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 SOX6P35712 828 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 LIFRP42702 1097 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms