RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Plekhg1F6S200 1446 aa12.75□□□□□ -0.37
Trim56-201ENSMUST00000054384 DgkkE9Q7N4 1118 aa12.75□□□□□ -0.37
Trim56-201ENSMUST00000054384 Eif4a1P60843 406 aaKnown RBP12.75□□□□□ -0.37
Trim56-201ENSMUST00000054384 Psmc1P62192 440 aa12.75□□□□□ -0.37
Trim56-201ENSMUST00000054384 Ece1Q4PZA2 769 aa12.75□□□□□ -0.37
Trim56-201ENSMUST00000054384 Uba6Q8C7R4 1053 aa12.75□□□□□ -0.37
Trim56-201ENSMUST00000054384 Thoc1Q8R3N6 657 aaKnown RBP12.75□□□□□ -0.37
Trim56-201ENSMUST00000054384 Rbbp7Q60973 425 aaKnown RBP12.75□□□□□ -0.37
Trim56-201ENSMUST00000054384 CntrobQ8CB62 887 aa12.75□□□□□ -0.37
Trim56-201ENSMUST00000054384 Ifi35Q9D8C4 286 aa12.75□□□□□ -0.37
Trim56-201ENSMUST00000054384 Fbxo3Q9DC63 480 aa12.75□□□□□ -0.37
Trim56-201ENSMUST00000054384 Ptk2bQ9QVP9 1009 aa12.75□□□□□ -0.37
Trim56-201ENSMUST00000054384 Rreb1Q3UH06 1700 aaKnown RBP12.75□□□□□ -0.37
Trim56-201ENSMUST00000054384 Brpf3B2KF05 1204 aaKnown RBP12.75□□□□□ -0.37
Trim56-201ENSMUST00000054384 Zfp850J3QPC5 689 aa12.75□□□□□ -0.37
Trim56-201ENSMUST00000054384 SftpbP50405 377 aa12.75□□□□□ -0.37
Trim56-201ENSMUST00000054384 Scg2Q03517 617 aa12.75□□□□□ -0.37
Trim56-201ENSMUST00000054384 Meis1Q60954 390 aa12.75□□□□□ -0.37
Trim56-201ENSMUST00000054384 Trmt112Q9DCG9 125 aa12.75□□□□□ -0.37
Trim56-201ENSMUST00000054384 Wbp4Q61048 376 aa12.75□□□□□ -0.37
Trim56-201ENSMUST00000054384 Sap130Q8BIH0 1057 aa12.75□□□□□ -0.37
Trim56-201ENSMUST00000054384 Ranbp17Q99NF8 1088 aa12.75□□□□□ -0.37
Trim56-201ENSMUST00000054384 Prl3b1P09586 222 aa12.75□□□□□ -0.37
Trim56-201ENSMUST00000054384 PrimpolQ6P1E7 537 aa12.75□□□□□ -0.37
Trim56-201ENSMUST00000054384 Gm16486A0A1D5RMD1 1434 aa12.75□□□□□ -0.37
Trim56-201ENSMUST00000054384 Eno1P17182 434 aaKnown RBP12.75□□□□□ -0.37
Trim56-201ENSMUST00000054384 Fam167bP17257 162 aa12.75□□□□□ -0.37
Trim56-201ENSMUST00000054384 Churc1Q6DG52 112 aa12.75□□□□□ -0.37
Trim56-201ENSMUST00000054384 Otub1Q7TQI3 271 aa12.75□□□□□ -0.37
Trim56-201ENSMUST00000054384 Best2Q8BGM5 508 aa12.75□□□□□ -0.37
Trim56-201ENSMUST00000054384 Hpcal4Q8BGZ1 191 aa12.75□□□□□ -0.37
Trim56-201ENSMUST00000054384 Klhl31Q8BWA5 634 aa12.75□□□□□ -0.37
Trim56-201ENSMUST00000054384 Zfp558E9Q1J0 407 aa12.75□□□□□ -0.37
Trim56-201ENSMUST00000054384 PlvapQ91VC4 438 aa12.75□□□□□ -0.37
Trim56-201ENSMUST00000054384 Cul7Q8VE73 1689 aa12.75□□□□□ -0.37
Trim56-201ENSMUST00000054384 Nsun7Q14AW5 724 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Hsph1Q61699 858 aaKnown RBP12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Pla2g4cQ64GA5 597 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Cacnb1Q8R3Z5 597 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Pold3Q9EQ28 462 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Dctpp1Q9QY93 170 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Suclg2Q9Z2I8 433 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Gm8922F6XVS9 199 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Anks1aP59672 1150 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Crnkl1P63154 690 aaKnown RBP12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Kiaa1468Q148V7 1216 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Zbtb40Q6PCS8 1258 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Dcaf15Q6PFH3 600 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Trim36Q80WG7 729 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 CenpuQ8C4M7 410 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Usp15Q8R5H1 981 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Ciao1Q99KN2 339 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Zscan12Q9Z1D7 501 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Fhod3Q76LL6 1578 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Sox5P35710 763 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 IqcmQ149I8 489 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Rgl1Q60695 768 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Fxr1Q61584 677 aaKnown RBP12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Fbxo9Q8BK06 437 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Champ1Q8K327 802 aaKnown RBP12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Vwa5aQ99KC8 793 aaKnown RBP12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Gm4340L7N2C4 268 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Mup5P11591 180 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Slc12a8Q8VI23 705 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Rnf6Q9DBU5 667 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Txnrd1Q9JMH6 613 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Abcc12Q80WJ6 1366 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Ugt1a5B2RT14 529 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Stx3Q64704 289 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 NemfQ8CCP0 1064 aaKnown RBP12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Slc8a2Q8K596 921 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Pdxdc1Q99K01 787 aaKnown RBP12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Ndst4Q9EQW8 872 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 ErmapQ9JLN5 566 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Gm8879F6R3J9 157 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Dnajb6O54946 365 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 ScinQ60604 715 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Tdrd7Q8K1H1 1086 aaKnown RBP12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Akr1c14Q91WT7 323 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Chordc1Q9D1P4 331 aaKnown RBP12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Serpina9Q9D7D2 418 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 PycardQ9EPB4 193 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Gm28360A0A087WR25 190 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Uhmk1P97343 419 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Znf148Q61624 794 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Zcwpw1Q6IR42 630 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Ric8bQ80XE1 520 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Ppm1kQ8BXN7 372 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Slc25a13Q9QXX4 676 aa12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Usp42B2RQC2 1324 aaKnown RBP12.74□□□□□ -0.37
Trim56-201ENSMUST00000054384 Zc3h6Q8BYK8 1177 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 CgasQ8C6L5 507 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 Nol6Q8R5K4 1152 aaKnown RBP12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 Armc7Q3UJZ3 198 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 Pcgf5Q3UK78 256 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 Dnajc3Q91YW3 504 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 Snf8Q9CZ28 258 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 TbcbQ9D1E6 244 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 3425401B19RikD3Z1D3 1412 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 Arpp19P56212 112 aaKnown RBP12.73□□□□□ -0.37
Retrieved 100 of 22,080 RNA–protein pairs in 17 ms