RNA–Protein interactions for RNA: ENST00000642137.1

LINC00339-213, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 222 nt, Biotype transcribed processed pseudogene, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-213ENST00000642137 DYDC2Q96IM9 177 aa13.82□□□□□ -0.2
LINC00339-213ENST00000642137 MCOLN1Q9GZU1 580 aa13.82□□□□□ -0.2
LINC00339-213ENST00000642137 RNF208Q9H0X6 261 aa13.82□□□□□ -0.2
LINC00339-213ENST00000642137 CCDC39Q9UFE4 941 aa13.82□□□□□ -0.2
LINC00339-213ENST00000642137 CEP350Q5VT06 3117 aa13.82□□□□□ -0.2
LINC00339-213ENST00000642137 MYH9P35579 1960 aaKnown RBP13.82□□□□□ -0.2
LINC00339-213ENST00000642137 GADD45BO75293 160 aaPredicted RBP13.81□□□□□ -0.2
LINC00339-213ENST00000642137 MED24O75448 989 aa13.81□□□□□ -0.2
LINC00339-213ENST00000642137 LYPLA2O95372 231 aa13.81□□□□□ -0.2
LINC00339-213ENST00000642137 PGK1P00558 417 aa13.81□□□□□ -0.2
LINC00339-213ENST00000642137 C6orf222P0C671 652 aaPredicted RBP13.81□□□□□ -0.2
LINC00339-213ENST00000642137 XRCC6P12956 609 aaKnown RBP eCLIP13.81□□□□□ -0.2
LINC00339-213ENST00000642137 CCT6AP40227 531 aaKnown RBP13.81□□□□□ -0.2
LINC00339-213ENST00000642137 QARSP47897 775 aaKnown RBP13.81□□□□□ -0.2
LINC00339-213ENST00000642137 STAT5BP51692 787 aa13.81□□□□□ -0.2
LINC00339-213ENST00000642137 PSMC5P62195 406 aa13.81□□□□□ -0.2
LINC00339-213ENST00000642137 FSCN1Q16658 493 aaKnown RBP13.81□□□□□ -0.2
LINC00339-213ENST00000642137 GNASQ5JWF2 1037 aa13.81□□□□□ -0.2
LINC00339-213ENST00000642137 FAM160B1Q5W0V3 765 aa13.81□□□□□ -0.2
LINC00339-213ENST00000642137 RNF180Q86T96 592 aa13.81□□□□□ -0.2
LINC00339-213ENST00000642137 C4orf19Q8IY42 314 aa13.81□□□□□ -0.2
LINC00339-213ENST00000642137 PCSK9Q8NBP7 692 aaKnown RBP13.81□□□□□ -0.2
LINC00339-213ENST00000642137 ARRDC4Q8NCT1 418 aa13.81□□□□□ -0.2
LINC00339-213ENST00000642137 SNX29Q8TEQ0 813 aa13.81□□□□□ -0.2
LINC00339-213ENST00000642137 MRPS27Q92552 414 aaKnown RBP13.81□□□□□ -0.2
LINC00339-213ENST00000642137 CALML4Q96GE6 196 aa13.81□□□□□ -0.2
LINC00339-213ENST00000642137 PCYT2Q99447 389 aa13.81□□□□□ -0.2
LINC00339-213ENST00000642137 NT5C3AQ9H0P0 336 aa13.81□□□□□ -0.2
LINC00339-213ENST00000642137 SMARCAD1Q9H4L7 1026 aa13.81□□□□□ -0.2
LINC00339-213ENST00000642137 AZI2Q9H6S1 392 aa13.81□□□□□ -0.2
LINC00339-213ENST00000642137 ZSWIM4Q9H7M6 989 aa13.81□□□□□ -0.2
LINC00339-213ENST00000642137 ZNF302Q9NR11 478 aa13.81□□□□□ -0.2
LINC00339-213ENST00000642137 RGL1Q9NZL6 768 aa13.81□□□□□ -0.2
LINC00339-213ENST00000642137 GABBR1Q9UBS5 961 aa13.81□□□□□ -0.2
LINC00339-213ENST00000642137 HPSEQ9Y251 543 aa13.81□□□□□ -0.2
LINC00339-213ENST00000642137 MAFBQ9Y5Q3 323 aaPredicted RBP13.81□□□□□ -0.2
LINC00339-213ENST00000642137 EMSYQ7Z589 1322 aa13.81□□□□□ -0.2
LINC00339-213ENST00000642137 SYNRGQ9UMZ2 1314 aa13.81□□□□□ -0.2
LINC00339-213ENST00000642137 BACH1O14867 736 aa13.8□□□□□ -0.2
LINC00339-213ENST00000642137 LGALS2P05162 132 aa13.8□□□□□ -0.2
LINC00339-213ENST00000642137 SLC26A2P50443 739 aa13.8□□□□□ -0.2
LINC00339-213ENST00000642137 BEX3Q00994 111 aa13.8□□□□□ -0.2
LINC00339-213ENST00000642137 CTTNQ14247 550 aaKnown RBP13.8□□□□□ -0.2
LINC00339-213ENST00000642137 UTP14CQ5TAP6 766 aaKnown RBP13.8□□□□□ -0.2
LINC00339-213ENST00000642137 CCSAPQ6IQ19 270 aaPredicted RBP13.8□□□□□ -0.2
LINC00339-213ENST00000642137 CCDC60Q8IWA6 550 aaPredicted RBP13.8□□□□□ -0.2
LINC00339-213ENST00000642137 TPH2Q8IWU9 490 aa13.8□□□□□ -0.2
LINC00339-213ENST00000642137 BANK1Q8NDB2 785 aa13.8□□□□□ -0.2
LINC00339-213ENST00000642137 ATP6V0A1Q93050 837 aa13.8□□□□□ -0.2
LINC00339-213ENST00000642137 PNMA5Q96PV4 448 aa13.8□□□□□ -0.2
LINC00339-213ENST00000642137 PYM1Q9BRP8 204 aaKnown RBP13.8□□□□□ -0.2
LINC00339-213ENST00000642137 C16orf70Q9BSU1 422 aa13.8□□□□□ -0.2
LINC00339-213ENST00000642137 TSEN34Q9BSV6 310 aaKnown RBP13.8□□□□□ -0.2
LINC00339-213ENST00000642137 KDM3AQ9Y4C1 1321 aa13.8□□□□□ -0.2
LINC00339-213ENST00000642137 A0A1B0GVL5 298 aa13.79□□□□□ -0.2
LINC00339-213ENST00000642137 MYADML2A6NDP7 307 aa13.79□□□□□ -0.2
LINC00339-213ENST00000642137 SGPL1O95470 568 aa13.79□□□□□ -0.2
LINC00339-213ENST00000642137 GJB1P08034 283 aa13.79□□□□□ -0.2
LINC00339-213ENST00000642137 ATP4AP20648 1035 aa13.79□□□□□ -0.2
LINC00339-213ENST00000642137 PTMSP20962 102 aa13.79□□□□□ -0.2
LINC00339-213ENST00000642137 IRX5P78411 483 aaPredicted RBP13.79□□□□□ -0.2
LINC00339-213ENST00000642137 CYP4A11Q02928 519 aa13.79□□□□□ -0.2
LINC00339-213ENST00000642137 GRB10Q13322 594 aa13.79□□□□□ -0.2
LINC00339-213ENST00000642137 KARSQ15046 597 aaKnown RBP13.79□□□□□ -0.2
LINC00339-213ENST00000642137 LRRC41Q15345 812 aa13.79□□□□□ -0.2
LINC00339-213ENST00000642137 KCNA10Q16322 511 aa13.79□□□□□ -0.2
LINC00339-213ENST00000642137 ECM1Q16610 540 aa13.79□□□□□ -0.2
LINC00339-213ENST00000642137 TMEM119Q4V9L6 283 aa13.79□□□□□ -0.2
LINC00339-213ENST00000642137 PDXDC2PQ6P474 469 aa13.79□□□□□ -0.2
LINC00339-213ENST00000642137 CCDC73Q6ZRK6 1079 aa13.79□□□□□ -0.2
LINC00339-213ENST00000642137 FSIP1Q8NA03 581 aa13.79□□□□□ -0.2
LINC00339-213ENST00000642137 GLG1Q92896 1179 aa13.79□□□□□ -0.2
LINC00339-213ENST00000642137 CDK5RAP3Q96JB5 506 aa13.79□□□□□ -0.2
LINC00339-213ENST00000642137 DEFB118Q96PH6 123 aa13.79□□□□□ -0.2
LINC00339-213ENST00000642137 NACC1Q96RE7 527 aa13.79□□□□□ -0.2
LINC00339-213ENST00000642137 LXNQ9BS40 222 aa13.79□□□□□ -0.2
LINC00339-213ENST00000642137 PANK2Q9BZ23 570 aa13.79□□□□□ -0.2
LINC00339-213ENST00000642137 NRBP2Q9NSY0 501 aa13.79□□□□□ -0.2
LINC00339-213ENST00000642137 ERAP1Q9NZ08 941 aa13.79□□□□□ -0.2
LINC00339-213ENST00000642137 OGDHLQ9ULD0 1010 aa13.79□□□□□ -0.2
LINC00339-213ENST00000642137 KCNH3Q9ULD8 1083 aa13.79□□□□□ -0.2
LINC00339-213ENST00000642137 KIAA1024Q9UPX6 916 aa13.79□□□□□ -0.2
LINC00339-213ENST00000642137 DDX11L8A8MPP1 907 aa13.78□□□□□ -0.2
LINC00339-213ENST00000642137 H3BRB1 525 aa13.78□□□□□ -0.2
LINC00339-213ENST00000642137 STBD1O95210 358 aa13.78□□□□□ -0.2
LINC00339-213ENST00000642137 MYCP01106 439 aaPredicted RBP13.78□□□□□ -0.2
LINC00339-213ENST00000642137 MYL3P08590 195 aa13.78□□□□□ -0.2
LINC00339-213ENST00000642137 PFKFB1P16118 471 aa13.78□□□□□ -0.2
LINC00339-213ENST00000642137 PURAQ00577 322 aaKnown RBP13.78□□□□□ -0.2
LINC00339-213ENST00000642137 XKR3Q5GH77 459 aa13.78□□□□□ -0.2
LINC00339-213ENST00000642137 RRAGBQ5VZM2 374 aa13.78□□□□□ -0.2
LINC00339-213ENST00000642137 OTUD6AQ7L8S5 288 aa13.78□□□□□ -0.2
LINC00339-213ENST00000642137 ENGASEQ8NFI3 743 aa13.78□□□□□ -0.2
LINC00339-213ENST00000642137 CRISPLD2Q9H0B8 497 aa13.78□□□□□ -0.2
LINC00339-213ENST00000642137 TUT1Q9H6E5 874 aaKnown RBP13.78□□□□□ -0.2
LINC00339-213ENST00000642137 ANKEF1Q9NU02 776 aa13.78□□□□□ -0.2
LINC00339-213ENST00000642137 DDX19AQ9NUU7 478 aaKnown RBP13.78□□□□□ -0.2
LINC00339-213ENST00000642137 USP25Q9UHP3 1055 aa13.78□□□□□ -0.2
LINC00339-213ENST00000642137 ZNF215Q9UL58 517 aaPredicted RBP13.78□□□□□ -0.2
LINC00339-213ENST00000642137 DNM3Q9UQ16 869 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms