RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 ATP1A4Q13733 1029 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 KCNB1Q14721 858 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 TLR1Q15399 786 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 C1orf94Q6P1W5 598 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 USP26Q9BXU7 913 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 NRDE2Q9H7Z3 1164 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 PCDHGB4Q9UN71 923 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 PACSIN2Q9UNF0 486 aaPredicted RBP3.86□□□□□ -1.79
SCN1A-221ENST00000641996 BRINP1O60477 761 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 SLCO1A2P46721 670 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 MYO1EQ12965 1108 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 AKIRIN2Q53H80 203 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 ARHGEF18Q6ZSZ5 1173 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 NUP93Q8N1F7 819 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 SNX25Q9H3E2 840 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 TBKBP1A7MCY6 615 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 UBA7P41226 1012 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 OTUD4Q01804 1114 aaKnown RBP3.85□□□□□ -1.79
SCN1A-221ENST00000641996 AFAP1L1Q8TED9 768 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 CATSPER2Q96P56 530 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 EURLQ9NYK6 297 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 ZKSCAN7Q9P0L1 754 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-221ENST00000641996 CDC23Q9UJX2 597 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 MTF2Q9Y483 593 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-221ENST00000641996 PCDHB9Q9Y5E1 797 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 SCN1AP35498 2009 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 MED12Q93074 2177 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 DNALI1O14645 258 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-221ENST00000641996 PDE3AQ14432 1141 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 ATP13A4Q4VNC1 1196 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 THEMIS2Q5TEJ8 643 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 TTC7BQ86TV6 843 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 GADD45GIP1Q8TAE8 222 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-221ENST00000641996 ZNF845Q96IR2 970 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-221ENST00000641996 YIPF4Q9BSR8 244 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 S100A9P06702 114 aaKnown RBP3.85□□□□□ -1.79
SCN1A-221ENST00000641996 GAP43P17677 238 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 OTUD7BQ6GQQ9 843 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 ETFRF1Q6IPR1 90 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 PPP1R14AQ96A00 147 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 RBM17Q96I25 401 aaKnown RBP3.85□□□□□ -1.79
SCN1A-221ENST00000641996 MOGAT1Q96PD6 335 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 HAUS8Q9BT25 410 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 RTEL1Q9NZ71 1219 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 RRN3P2A6NIE6 340 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 C19orf81C9J6K1 198 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 IFRD1O00458 451 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-221ENST00000641996 SCAMP3O14828 347 aaKnown RBP3.85□□□□□ -1.79
SCN1A-221ENST00000641996 STAT2P52630 851 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 KRT85P78386 507 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 PDE1BQ01064 536 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 P3H1Q32P28 736 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 WDR44Q5JSH3 913 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 SCYL3Q8IZE3 742 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 PSPC1Q8WXF1 523 aaKnown RBP3.85□□□□□ -1.79
SCN1A-221ENST00000641996 SYNJ2BP-COX16A0A087WUM0 186 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 C2orf74A8MZ97 194 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 DYNC1LI2O43237 492 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-221ENST00000641996 HMBSP08397 361 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 FUT4P22083 530 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 CD83Q01151 205 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 PPIL2Q13356 520 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 SPDYAQ5MJ70 313 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 CABP7Q86V35 215 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 KCT2Q8NC54 265 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 EPS8L3Q8TE67 593 aaKnown RBP3.85□□□□□ -1.79
SCN1A-221ENST00000641996 FBF1Q8TES7 1133 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 HINFPQ9BQA5 517 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 VPS11Q9H270 941 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 FBRSL1Q9HCM7 1045 aaKnown RBP3.85□□□□□ -1.79
SCN1A-221ENST00000641996 H0YCG3 227 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 PRG2P13727 222 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 PRLRP16471 622 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 PLCD1P51178 756 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 CYTH1Q15438 398 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 C4orf50Q6ZRC1 276 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 RNF34Q969K3 372 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 CCDC127Q96BQ5 260 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 CAPZA3Q96KX2 299 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 NUP88Q99567 741 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-221ENST00000641996 PRPF18Q99633 342 aaKnown RBP3.85□□□□□ -1.79
SCN1A-221ENST00000641996 STMN4Q9H169 189 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-221ENST00000641996 TRPS1Q9UHF7 1281 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 TTC7AQ9ULT0 858 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-221ENST00000641996 CHUKO15111 745 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 KRT37O76014 449 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 MAP3K6O95382 1288 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 CALB1P05937 261 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 FGFR4P22455 802 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 NLRP6P59044 892 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 ZNF425Q6IV72 752 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 PMF1Q6P1K2 205 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 PNMA8AQ86V59 439 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-221ENST00000641996 GRK7Q8WTQ7 553 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 IFT81Q8WYA0 676 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 KIFAP3Q92845 792 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 EPAS1Q99814 870 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 ACAD9Q9H845 621 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 TUBGCP4Q9UGJ1 667 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 DDX19BQ9UMR2 479 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms