RNA–Protein interactions for RNA: ENST00000637439.1

CIITA-215, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-215ENST00000637439 MARK3P27448 753 aa20.48■□□□□ 0.87
CIITA-215ENST00000637439 FBXO47Q5MNV8 452 aa20.48■□□□□ 0.87
CIITA-215ENST00000637439 TSHZ1Q6ZSZ6 1077 aa20.48■□□□□ 0.87
CIITA-215ENST00000637439 TEX2Q8IWB9 1127 aa20.48■□□□□ 0.87
CIITA-215ENST00000637439 DNAJB3Q8WWF6 145 aa20.48■□□□□ 0.87
CIITA-215ENST00000637439 CLP1Q92989 425 aaKnown RBP20.48■□□□□ 0.87
CIITA-215ENST00000637439 JADE2Q9NQC1 790 aa20.48■□□□□ 0.87
CIITA-215ENST00000637439 SLC12A7Q9Y666 1083 aa20.48■□□□□ 0.87
CIITA-215ENST00000637439 HOXD11P31277 338 aaPredicted RBP20.47■□□□□ 0.87
CIITA-215ENST00000637439 MRPS6P82932 125 aaKnown RBP20.47■□□□□ 0.87
CIITA-215ENST00000637439 MARCH8Q5T0T0 291 aa20.47■□□□□ 0.87
CIITA-215ENST00000637439 IER5Q5VY09 327 aa20.47■□□□□ 0.87
CIITA-215ENST00000637439 CMTR1Q8N1G2 835 aaKnown RBP20.47■□□□□ 0.87
CIITA-215ENST00000637439 PLVAPQ9BX97 442 aa20.47■□□□□ 0.87
CIITA-215ENST00000637439 AZI2Q9H6S1 392 aa20.47■□□□□ 0.87
CIITA-215ENST00000637439 RC3H2Q9HBD1 1191 aaKnown RBP20.47■□□□□ 0.87
CIITA-215ENST00000637439 CLDND1Q9NY35 253 aa20.47■□□□□ 0.87
CIITA-215ENST00000637439 PCDHA6Q9UN73 950 aa20.47■□□□□ 0.87
CIITA-215ENST00000637439 PCDHA8Q9Y5H6 950 aa20.47■□□□□ 0.87
CIITA-215ENST00000637439 CDY2AQ9Y6F7 541 aa20.47■□□□□ 0.87
CIITA-215ENST00000637439 SQORQ9Y6N5 450 aa20.47■□□□□ 0.87
CIITA-215ENST00000637439 RXRAP19793 462 aa20.46■□□□□ 0.87
CIITA-215ENST00000637439 BTG3Q14201 252 aaPredicted RBP20.46■□□□□ 0.87
CIITA-215ENST00000637439 UBE2SQ16763 222 aa20.46■□□□□ 0.87
CIITA-215ENST00000637439 FANCBQ8NB91 859 aa20.46■□□□□ 0.87
CIITA-215ENST00000637439 ZNF689Q96CS4 500 aaPredicted RBP20.46■□□□□ 0.87
CIITA-215ENST00000637439 FTHL17Q9BXU8 183 aa20.46■□□□□ 0.87
CIITA-215ENST00000637439 JPH1Q9HDC5 661 aaPredicted RBP20.46■□□□□ 0.87
CIITA-215ENST00000637439 PKD2L1Q9P0L9 805 aa20.46■□□□□ 0.87
CIITA-215ENST00000637439 TTC3P53804 2025 aa20.45■□□□□ 0.86
CIITA-215ENST00000637439 M0QZ92 97 aa20.45■□□□□ 0.86
CIITA-215ENST00000637439 LINC00271P0C7V0 271 aa20.45■□□□□ 0.86
CIITA-215ENST00000637439 IGBP1P78318 339 aa20.45■□□□□ 0.86
CIITA-215ENST00000637439 SYNE3Q6ZMZ3 975 aa20.45■□□□□ 0.86
CIITA-215ENST00000637439 TMTC3Q6ZXV5 915 aa20.45■□□□□ 0.86
CIITA-215ENST00000637439 HEATR3Q7Z4Q2 680 aa20.45■□□□□ 0.86
CIITA-215ENST00000637439 SLC9A2Q9UBY0 812 aa20.45■□□□□ 0.86
CIITA-215ENST00000637439 SLC27A2O14975 620 aa20.44■□□□□ 0.86
CIITA-215ENST00000637439 GRM6O15303 877 aa20.44■□□□□ 0.86
CIITA-215ENST00000637439 DGKIO75912 1065 aa20.44■□□□□ 0.86
CIITA-215ENST00000637439 INSRRP14616 1297 aa20.44■□□□□ 0.86
CIITA-215ENST00000637439 CSPP1Q1MSJ5 1256 aa20.44■□□□□ 0.86
CIITA-215ENST00000637439 CTC1Q2NKJ3 1217 aa20.44■□□□□ 0.86
CIITA-215ENST00000637439 NAALADL2Q58DX5 795 aa20.44■□□□□ 0.86
CIITA-215ENST00000637439 FAM43BQ6ZT52 329 aaPredicted RBP20.44■□□□□ 0.86
CIITA-215ENST00000637439 CCDC82Q8N4S0 544 aa20.44■□□□□ 0.86
CIITA-215ENST00000637439 MXRA8Q9BRK3 442 aa20.44■□□□□ 0.86
CIITA-215ENST00000637439 SDF4Q9BRK5 362 aa20.44■□□□□ 0.86
CIITA-215ENST00000637439 LSG1Q9H089 658 aaKnown RBP20.44■□□□□ 0.86
CIITA-215ENST00000637439 KCNH7Q9NS40 1196 aa20.44■□□□□ 0.86
CIITA-215ENST00000637439 TRPC6Q9Y210 931 aa20.44■□□□□ 0.86
CIITA-215ENST00000637439 NFASCO94856 1347 aa20.44■□□□□ 0.86
CIITA-215ENST00000637439 hCG_1642624A0A1W2PR95 340 aa20.43■□□□□ 0.86
CIITA-215ENST00000637439 DCXO43602 365 aa20.43■□□□□ 0.86
CIITA-215ENST00000637439 FOSP01100 380 aaPredicted RBP20.43■□□□□ 0.86
CIITA-215ENST00000637439 MMP1P03956 469 aa20.43■□□□□ 0.86
CIITA-215ENST00000637439 CD52P31358 61 aa20.43■□□□□ 0.86
CIITA-215ENST00000637439 ZP2Q05996 745 aa20.43■□□□□ 0.86
CIITA-215ENST00000637439 PLPPR4Q7Z2D5 763 aa20.43■□□□□ 0.86
CIITA-215ENST00000637439 SGMS1Q86VZ5 419 aa20.43■□□□□ 0.86
CIITA-215ENST00000637439 ADHFE1Q8IWW8 467 aa20.43■□□□□ 0.86
CIITA-215ENST00000637439 CMTR2Q8IYT2 770 aaKnown RBP20.43■□□□□ 0.86
CIITA-215ENST00000637439 P2RX5Q93086 422 aa20.43■□□□□ 0.86
CIITA-215ENST00000637439 PPP2R3CQ969Q6 453 aa20.43■□□□□ 0.86
CIITA-215ENST00000637439 UPF3BQ9BZI7 483 aaKnown RBP20.43■□□□□ 0.86
CIITA-215ENST00000637439 FAM49AQ9H0Q0 323 aaPredicted RBP20.43■□□□□ 0.86
CIITA-215ENST00000637439 AGO3Q9H9G7 860 aaKnown RBP20.43■□□□□ 0.86
CIITA-215ENST00000637439 TRPV2Q9Y5S1 764 aa20.43■□□□□ 0.86
CIITA-215ENST00000637439 C19orf67A6NJJ6 358 aa20.42■□□□□ 0.86
CIITA-215ENST00000637439 STAG3L1P0CL83 205 aa20.42■□□□□ 0.86
CIITA-215ENST00000637439 LTBRP36941 435 aa20.42■□□□□ 0.86
CIITA-215ENST00000637439 HYAL1Q12794 435 aa20.42■□□□□ 0.86
CIITA-215ENST00000637439 NECTIN1Q15223 517 aa20.42■□□□□ 0.86
CIITA-215ENST00000637439 CREB3L3Q68CJ9 461 aa20.42■□□□□ 0.86
CIITA-215ENST00000637439 PPP1R18Q6NYC8 613 aa20.42■□□□□ 0.86
CIITA-215ENST00000637439 MICU3Q86XE3 530 aa20.42■□□□□ 0.86
CIITA-215ENST00000637439 NPAS4Q8IUM7 802 aa20.42■□□□□ 0.86
CIITA-215ENST00000637439 NME8Q8N427 588 aa20.42■□□□□ 0.86
CIITA-215ENST00000637439 PCYT2Q99447 389 aa20.42■□□□□ 0.86
CIITA-215ENST00000637439 POP1Q99575 1024 aaKnown RBP20.42■□□□□ 0.86
CIITA-215ENST00000637439 ESYT1Q9BSJ8 1104 aa20.42■□□□□ 0.86
CIITA-215ENST00000637439 RBM28Q9NW13 759 aaKnown RBP20.42■□□□□ 0.86
CIITA-215ENST00000637439 PCDHA2Q9Y5H9 948 aa20.42■□□□□ 0.86
CIITA-215ENST00000637439 ATG2AQ2TAZ0 1938 aa20.41■□□□□ 0.86
CIITA-215ENST00000637439 POTEB3A0JP26 581 aa20.41■□□□□ 0.86
CIITA-215ENST00000637439 SLC26A2P50443 739 aa20.41■□□□□ 0.86
CIITA-215ENST00000637439 STAT5BP51692 787 aa20.41■□□□□ 0.86
CIITA-215ENST00000637439 NAPAP54920 295 aa20.41■□□□□ 0.86
CIITA-215ENST00000637439 ACTR2P61160 394 aa20.41■□□□□ 0.86
CIITA-215ENST00000637439 SMAD2Q15796 467 aaKnown RBP20.41■□□□□ 0.86
CIITA-215ENST00000637439 POTEBQ6S5H4 581 aa20.41■□□□□ 0.86
CIITA-215ENST00000637439 RAB11FIP4Q86YS3 637 aa20.41■□□□□ 0.86
CIITA-215ENST00000637439 RIC8AQ9NPQ8 531 aa20.41■□□□□ 0.86
CIITA-215ENST00000637439 PLAGL2Q9UPG8 496 aa20.41■□□□□ 0.86
CIITA-215ENST00000637439 MYO7AQ13402 2215 aa20.41■□□□□ 0.86
CIITA-215ENST00000637439 SMIM35A0A1B0GVV1 85 aa20.4■□□□□ 0.86
CIITA-215ENST00000637439 hCG_1984214I3L0E3 225 aa20.4■□□□□ 0.86
CIITA-215ENST00000637439 PAK2Q13177 524 aa20.4■□□□□ 0.86
CIITA-215ENST00000637439 PLCB4Q15147 1175 aa20.4■□□□□ 0.86
CIITA-215ENST00000637439 CEP55Q53EZ4 464 aa20.4■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms