RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 ZNF746Q6NUN9 644 aaPredicted RBP22.42■■□□□ 1.18
CLN3-250ENST00000636839 ABRAQ8N0Z2 381 aa22.42■■□□□ 1.18
CLN3-250ENST00000636839 NPLOC4Q8TAT6 608 aa22.42■■□□□ 1.18
CLN3-250ENST00000636839 MORC4Q8TE76 937 aa22.42■■□□□ 1.18
CLN3-250ENST00000636839 HSD3B7Q9H2F3 369 aa22.42■■□□□ 1.18
CLN3-250ENST00000636839 NFASCO94856 1347 aa22.42■■□□□ 1.18
CLN3-250ENST00000636839 DEFB115Q30KQ5 88 aa22.41■■□□□ 1.18
CLN3-250ENST00000636839 GLIS3Q8NEA6 775 aa22.41■■□□□ 1.18
CLN3-250ENST00000636839 ZFYVE28Q9HCC9 887 aa22.41■■□□□ 1.18
CLN3-250ENST00000636839 RMND1Q9NWS8 449 aa22.41■■□□□ 1.18
CLN3-250ENST00000636839 CTGFP29279 349 aa22.41■■□□□ 1.18
CLN3-250ENST00000636839 QARSP47897 775 aaKnown RBP22.41■■□□□ 1.18
CLN3-250ENST00000636839 COPS5Q92905 334 aa22.41■■□□□ 1.18
CLN3-250ENST00000636839 CAPNS2Q96L46 248 aa22.41■■□□□ 1.18
CLN3-250ENST00000636839 NACC1Q96RE7 527 aa22.41■■□□□ 1.18
CLN3-250ENST00000636839 SENP7Q9BQF6 1050 aa22.41■■□□□ 1.18
CLN3-250ENST00000636839 ZSWIM4Q9H7M6 989 aa22.41■■□□□ 1.18
CLN3-250ENST00000636839 SLC39A2Q9NP94 309 aa22.41■■□□□ 1.18
CLN3-250ENST00000636839 EXOC1Q9NV70 894 aa22.41■■□□□ 1.18
CLN3-250ENST00000636839 TCEAL9Q9UHQ7 104 aa22.41■■□□□ 1.18
CLN3-250ENST00000636839 DDX41Q9UJV9 622 aaKnown RBP22.41■■□□□ 1.18
CLN3-250ENST00000636839 PCDHA10Q9Y5I2 948 aa22.41■■□□□ 1.18
CLN3-250ENST00000636839 DOCK3Q8IZD9 2030 aa22.41■■□□□ 1.18
CLN3-250ENST00000636839 JAK3P52333 1124 aa22.4■■□□□ 1.18
CLN3-250ENST00000636839 HSP90AA4PQ58FG1 418 aa22.4■■□□□ 1.18
CLN3-250ENST00000636839 UTP14CQ5TAP6 766 aaKnown RBP22.4■■□□□ 1.18
CLN3-250ENST00000636839 RINT1Q6NUQ1 792 aa22.4■■□□□ 1.18
CLN3-250ENST00000636839 SWSAP1Q6NVH7 229 aa22.4■■□□□ 1.18
CLN3-250ENST00000636839 UNC13DQ70J99 1090 aa22.4■■□□□ 1.18
CLN3-250ENST00000636839 GIMAP8Q8ND71 665 aaPredicted RBP22.4■■□□□ 1.18
CLN3-250ENST00000636839 FGFBP2Q9BYJ0 223 aa22.4■■□□□ 1.18
CLN3-250ENST00000636839 TBC1D7Q9P0N9 293 aa22.4■■□□□ 1.18
CLN3-250ENST00000636839 GABBR1Q9UBS5 961 aa22.4■■□□□ 1.18
CLN3-250ENST00000636839 RSPH10B2B2RC85 870 aa22.4■■□□□ 1.18
CLN3-250ENST00000636839 B4DLN1 442 aa22.4■■□□□ 1.18
CLN3-250ENST00000636839 GOLGA6L19H0YKK7 550 aa22.4■■□□□ 1.18
CLN3-250ENST00000636839 RSPH10BP0C881 870 aa22.4■■□□□ 1.18
CLN3-250ENST00000636839 SFNP31947 248 aa22.4■■□□□ 1.18
CLN3-250ENST00000636839 GIT2Q14161 759 aa22.4■■□□□ 1.18
CLN3-250ENST00000636839 CNNM4Q6P4Q7 775 aa22.4■■□□□ 1.18
CLN3-250ENST00000636839 ABHD15Q6UXT9 468 aa22.4■■□□□ 1.18
CLN3-250ENST00000636839 KIAA0895Q8NCT3 520 aa22.4■■□□□ 1.18
CLN3-250ENST00000636839 REEP2Q9BRK0 252 aa22.4■■□□□ 1.18
CLN3-250ENST00000636839 ASB14A6NK59 587 aa22.39■■□□□ 1.17
CLN3-250ENST00000636839 ZNF862O60290 1169 aa22.39■■□□□ 1.17
CLN3-250ENST00000636839 FARP2O94887 1054 aaPredicted RBP22.39■■□□□ 1.17
CLN3-250ENST00000636839 GGPS1O95749 300 aa22.39■■□□□ 1.17
CLN3-250ENST00000636839 SNAI1O95863 264 aaPredicted RBP22.39■■□□□ 1.17
CLN3-250ENST00000636839 KRT18P05783 430 aaKnown RBP22.39■■□□□ 1.17
CLN3-250ENST00000636839 GJC2Q5T442 439 aaPredicted RBP22.39■■□□□ 1.17
CLN3-250ENST00000636839 CCDC60Q8IWA6 550 aaPredicted RBP22.39■■□□□ 1.17
CLN3-250ENST00000636839 MAML3Q96JK9 1138 aa22.39■■□□□ 1.17
CLN3-250ENST00000636839 PANK4Q9NVE7 773 aa22.39■■□□□ 1.17
CLN3-250ENST00000636839 CTNND2Q9UQB3 1225 aa22.39■■□□□ 1.17
CLN3-250ENST00000636839 PLXNA1Q9UIW2 1896 aa22.38■■□□□ 1.17
CLN3-250ENST00000636839 PVALEFA0A1B0GWK0 134 aa22.38■■□□□ 1.17
CLN3-250ENST00000636839 EHHADHQ08426 723 aa22.38■■□□□ 1.17
CLN3-250ENST00000636839 COASYQ13057 564 aa22.38■■□□□ 1.17
CLN3-250ENST00000636839 MORN1Q5T089 497 aa22.38■■□□□ 1.17
CLN3-250ENST00000636839 C1orf186Q6ZWK4 172 aa22.38■■□□□ 1.17
CLN3-250ENST00000636839 NEK9Q8TD19 979 aa22.38■■□□□ 1.17
CLN3-250ENST00000636839 MPHOSPH6Q99547 160 aaKnown RBP22.38■■□□□ 1.17
CLN3-250ENST00000636839 ZHX3Q9H4I2 956 aa22.38■■□□□ 1.17
CLN3-250ENST00000636839 CREBZFQ9NS37 354 aa22.38■■□□□ 1.17
CLN3-250ENST00000636839 FANCLQ9NW38 375 aa22.38■■□□□ 1.17
CLN3-250ENST00000636839 SYNGAP1Q96PV0 1343 aa22.38■■□□□ 1.17
CLN3-250ENST00000636839 SLC15A5A6NIM6 579 aa22.38■■□□□ 1.17
CLN3-250ENST00000636839 RASSF10A6NK89 507 aa22.38■■□□□ 1.17
CLN3-250ENST00000636839 SFI1A8K8P3 1242 aa22.38■■□□□ 1.17
CLN3-250ENST00000636839 CA12O43570 354 aa22.38■■□□□ 1.17
CLN3-250ENST00000636839 APLP1P51693 650 aa22.38■■□□□ 1.17
CLN3-250ENST00000636839 PSMC5P62195 406 aa22.38■■□□□ 1.17
CLN3-250ENST00000636839 LRRC41Q15345 812 aa22.38■■□□□ 1.17
CLN3-250ENST00000636839 PLA2G4FQ68DD2 849 aa22.38■■□□□ 1.17
CLN3-250ENST00000636839 TAPT1Q6NXT6 567 aa22.38■■□□□ 1.17
CLN3-250ENST00000636839 CCDC62Q6P9F0 684 aa22.38■■□□□ 1.17
CLN3-250ENST00000636839 LRRC27Q9C0I9 530 aa22.38■■□□□ 1.17
CLN3-250ENST00000636839 BMP2KQ9NSY1 1161 aaPredicted RBP22.38■■□□□ 1.17
CLN3-250ENST00000636839 CENPFP49454 3210 aa22.37■■□□□ 1.17
CLN3-250ENST00000636839 GSTTP1A0A1W2PQM5 241 aa22.37■■□□□ 1.17
CLN3-250ENST00000636839 TGFB3P10600 412 aa22.37■■□□□ 1.17
CLN3-250ENST00000636839 ATP1A3P13637 1013 aa22.37■■□□□ 1.17
CLN3-250ENST00000636839 YWHABP31946 246 aaKnown RBP22.37■■□□□ 1.17
CLN3-250ENST00000636839 PMS1P54277 932 aaKnown RBP22.37■■□□□ 1.17
CLN3-250ENST00000636839 NPEPPSP55786 919 aa22.37■■□□□ 1.17
CLN3-250ENST00000636839 MYL5Q02045 173 aa22.37■■□□□ 1.17
CLN3-250ENST00000636839 NOGQ13253 232 aa22.37■■□□□ 1.17
CLN3-250ENST00000636839 SMAP1Q8IYB5 467 aaPredicted RBP22.37■■□□□ 1.17
CLN3-250ENST00000636839 ADSSL1Q8N142 457 aa22.37■■□□□ 1.17
CLN3-250ENST00000636839 ARHGAP39Q9C0H5 1083 aa22.37■■□□□ 1.17
CLN3-250ENST00000636839 CDKN2AIPQ9NXV6 580 aaPredicted RBP22.37■■□□□ 1.17
CLN3-250ENST00000636839 STBD1O95210 358 aa22.36■■□□□ 1.17
CLN3-250ENST00000636839 ADCY5O95622 1261 aa22.36■■□□□ 1.17
CLN3-250ENST00000636839 MUTP22033 750 aa22.36■■□□□ 1.17
CLN3-250ENST00000636839 KATNBL1Q9H079 304 aa22.36■■□□□ 1.17
CLN3-250ENST00000636839 FLRT1Q9NZU1 646 aa22.36■■□□□ 1.17
CLN3-250ENST00000636839 DACH1Q9UI36 760 aa22.36■■□□□ 1.17
CLN3-250ENST00000636839 TRIM49BA6NDI0 452 aa22.36■■□□□ 1.17
CLN3-250ENST00000636839 IKBKBO14920 756 aa22.36■■□□□ 1.17
CLN3-250ENST00000636839 PSAPP07602 524 aa22.36■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms