RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 RRAGBQ5VZM2 374 aa23.07■■□□□ 1.28
CLN3-245ENST00000636172 MIS18BP1Q6P0N0 1132 aa23.07■■□□□ 1.28
CLN3-245ENST00000636172 POTEGQ6S5H5 508 aa23.07■■□□□ 1.28
CLN3-245ENST00000636172 LXNQ9BS40 222 aa23.07■■□□□ 1.28
CLN3-245ENST00000636172 WRAP73Q9P2S5 460 aaPredicted RBP23.07■■□□□ 1.28
CLN3-245ENST00000636172 PTPN22Q9Y2R2 807 aa23.07■■□□□ 1.28
CLN3-245ENST00000636172 ACTN4O43707 911 aaKnown RBP23.06■■□□□ 1.28
CLN3-245ENST00000636172 P4HBP07237 508 aaKnown RBP23.06■■□□□ 1.28
CLN3-245ENST00000636172 PSAPP07602 524 aa23.06■■□□□ 1.28
CLN3-245ENST00000636172 GRK4P32298 578 aa23.06■■□□□ 1.28
CLN3-245ENST00000636172 STAT6P42226 847 aa23.06■■□□□ 1.28
CLN3-245ENST00000636172 LBX1P52954 281 aa23.06■■□□□ 1.28
CLN3-245ENST00000636172 UGCGQ16739 394 aa23.06■■□□□ 1.28
CLN3-245ENST00000636172 TPH2Q8IWU9 490 aa23.06■■□□□ 1.28
CLN3-245ENST00000636172 IQUBQ8NA54 791 aa23.06■■□□□ 1.28
CLN3-245ENST00000636172 SEPT1Q8WYJ6 367 aa23.06■■□□□ 1.28
CLN3-245ENST00000636172 PYM1Q9BRP8 204 aaKnown RBP23.06■■□□□ 1.28
CLN3-245ENST00000636172 NT5C3AQ9H0P0 336 aa23.06■■□□□ 1.28
CLN3-245ENST00000636172 KIAA1024Q9UPX6 916 aa23.06■■□□□ 1.28
CLN3-245ENST00000636172 IGKV6D-21A0A0A0MT36 114 aa23.05■■□□□ 1.28
CLN3-245ENST00000636172 NOP56O00567 594 aaKnown RBP23.05■■□□□ 1.28
CLN3-245ENST00000636172 KINO60870 393 aaKnown RBP23.05■■□□□ 1.28
CLN3-245ENST00000636172 INHAP05111 366 aa23.05■■□□□ 1.28
CLN3-245ENST00000636172 CCND3P30281 292 aaPredicted RBP23.05■■□□□ 1.28
CLN3-245ENST00000636172 PDXDC2PQ6P474 469 aa23.05■■□□□ 1.28
CLN3-245ENST00000636172 KCNK18Q7Z418 384 aa23.05■■□□□ 1.28
CLN3-245ENST00000636172 CCDC60Q8IWA6 550 aaPredicted RBP23.05■■□□□ 1.28
CLN3-245ENST00000636172 OR6J1Q8NGC5 347 aa23.05■■□□□ 1.28
CLN3-245ENST00000636172 PPTC7Q8NI37 304 aa23.05■■□□□ 1.28
CLN3-245ENST00000636172 DDX19AQ9NUU7 478 aaKnown RBP23.05■■□□□ 1.28
CLN3-245ENST00000636172 SERTAD1Q9UHV2 236 aa23.05■■□□□ 1.28
CLN3-245ENST00000636172 SEPT4O43236 478 aa23.04■■□□□ 1.28
CLN3-245ENST00000636172 MUTP22033 750 aa23.04■■□□□ 1.28
CLN3-245ENST00000636172 TCF7P36402 384 aaPredicted RBP23.04■■□□□ 1.28
CLN3-245ENST00000636172 QARSP47897 775 aaKnown RBP23.04■■□□□ 1.28
CLN3-245ENST00000636172 SWSAP1Q6NVH7 229 aa23.04■■□□□ 1.28
CLN3-245ENST00000636172 KRBA2Q6ZNG9 492 aa23.04■■□□□ 1.28
CLN3-245ENST00000636172 TLK2Q86UE8 772 aa23.04■■□□□ 1.28
CLN3-245ENST00000636172 AFG1LQ8WV93 481 aa23.04■■□□□ 1.28
CLN3-245ENST00000636172 TIGD1Q96MW7 591 aa23.04■■□□□ 1.28
CLN3-245ENST00000636172 GABBR1Q9UBS5 961 aa23.04■■□□□ 1.28
CLN3-245ENST00000636172 USP25Q9UHP3 1055 aa23.04■■□□□ 1.28
CLN3-245ENST00000636172 SLFN14P0C7P3 912 aa23.03■■□□□ 1.28
CLN3-245ENST00000636172 CNGA1P29973 690 aa23.03■■□□□ 1.28
CLN3-245ENST00000636172 PSMC5P62195 406 aa23.03■■□□□ 1.28
CLN3-245ENST00000636172 PCYT2Q99447 389 aa23.03■■□□□ 1.28
CLN3-245ENST00000636172 ZSWIM4Q9H7M6 989 aa23.03■■□□□ 1.28
CLN3-245ENST00000636172 BLOC1S4Q9NUP1 217 aa23.03■■□□□ 1.28
CLN3-245ENST00000636172 STK17AQ9UEE5 414 aa23.03■■□□□ 1.28
CLN3-245ENST00000636172 Q9Y3F1 56 aa23.03■■□□□ 1.28
CLN3-245ENST00000636172 IGSF9BQ9UPX0 1349 aa23.03■■□□□ 1.28
CLN3-245ENST00000636172 MYH9P35579 1960 aaKnown RBP23.03■■□□□ 1.28
CLN3-245ENST00000636172 BACH1O14867 736 aa23.03■■□□□ 1.28
CLN3-245ENST00000636172 DYNC1LI2O43237 492 aaPredicted RBP23.03■■□□□ 1.28
CLN3-245ENST00000636172 PSMC6P62333 389 aa23.03■■□□□ 1.28
CLN3-245ENST00000636172 CAVIN1Q6NZI2 390 aaKnown RBP23.03■■□□□ 1.28
CLN3-245ENST00000636172 CNNM3Q8NE01 707 aa23.03■■□□□ 1.28
CLN3-245ENST00000636172 CLSTN2Q9H4D0 955 aa23.03■■□□□ 1.28
CLN3-245ENST00000636172 TMEM63CQ9P1W3 806 aa23.03■■□□□ 1.28
CLN3-245ENST00000636172 A0A087WWV3 80 aa23.02■■□□□ 1.28
CLN3-245ENST00000636172 E9PMD0 336 aa23.02■■□□□ 1.28
CLN3-245ENST00000636172 DUSP11O75319 330 aaKnown RBP23.02■■□□□ 1.28
CLN3-245ENST00000636172 LGR5O75473 907 aa23.02■■□□□ 1.28
CLN3-245ENST00000636172 LYPLA2O95372 231 aa23.02■■□□□ 1.28
CLN3-245ENST00000636172 CTU1Q7Z7A3 348 aaKnown RBP23.02■■□□□ 1.28
CLN3-245ENST00000636172 CEP57L1Q8IYX8 460 aa23.02■■□□□ 1.28
CLN3-245ENST00000636172 SH3TC2Q8TF17 1288 aa23.02■■□□□ 1.28
CLN3-245ENST00000636172 RAD54LQ92698 747 aa23.02■■□□□ 1.28
CLN3-245ENST00000636172 ATP6V0A1Q93050 837 aa23.02■■□□□ 1.28
CLN3-245ENST00000636172 CUEDC2Q9H467 287 aa23.02■■□□□ 1.28
CLN3-245ENST00000636172 ZNF302Q9NR11 478 aa23.02■■□□□ 1.28
CLN3-245ENST00000636172 ZNF862O60290 1169 aa23.01■■□□□ 1.27
CLN3-245ENST00000636172 MMP3P08254 477 aa23.01■■□□□ 1.27
CLN3-245ENST00000636172 HOXD8P13378 290 aaPredicted RBP23.01■■□□□ 1.27
CLN3-245ENST00000636172 C4orf19Q8IY42 314 aa23.01■■□□□ 1.27
CLN3-245ENST00000636172 KCTD17Q8N5Z5 321 aa23.01■■□□□ 1.27
CLN3-245ENST00000636172 NUP62CLQ9H1M0 184 aa23.01■■□□□ 1.27
CLN3-245ENST00000636172 MAFBQ9Y5Q3 323 aaPredicted RBP23.01■■□□□ 1.27
CLN3-245ENST00000636172 EMSYQ7Z589 1322 aa23■■□□□ 1.27
CLN3-245ENST00000636172 A6NJR5 290 aa23■■□□□ 1.27
CLN3-245ENST00000636172 ZBTB39O15060 712 aa23■■□□□ 1.27
CLN3-245ENST00000636172 CAMK4Q16566 473 aa23■■□□□ 1.27
CLN3-245ENST00000636172 TRIM50Q86XT4 487 aa23■■□□□ 1.27
CLN3-245ENST00000636172 AFAP1L1Q8TED9 768 aa23■■□□□ 1.27
CLN3-245ENST00000636172 PIGOQ8TEQ8 1089 aa23■■□□□ 1.27
CLN3-245ENST00000636172 LARP4BQ92615 738 aaKnown RBP23■■□□□ 1.27
CLN3-245ENST00000636172 NACC1Q96RE7 527 aa23■■□□□ 1.27
CLN3-245ENST00000636172 MTRQ99707 1265 aa23■■□□□ 1.27
CLN3-245ENST00000636172 AP5M1Q9H0R1 490 aa23■■□□□ 1.27
CLN3-245ENST00000636172 DNM3Q9UQ16 869 aa23■■□□□ 1.27
CLN3-245ENST00000636172 LOXHD1Q8IVV2 1947 aa22.99■■□□□ 1.27
CLN3-245ENST00000636172 RARBP10826 455 aa22.99■■□□□ 1.27
CLN3-245ENST00000636172 IRX5P78411 483 aaPredicted RBP22.99■■□□□ 1.27
CLN3-245ENST00000636172 PRKCEQ02156 737 aa22.99■■□□□ 1.27
CLN3-245ENST00000636172 MCM6Q14566 821 aa22.99■■□□□ 1.27
CLN3-245ENST00000636172 CCDC183Q5T5S1 534 aa22.99■■□□□ 1.27
CLN3-245ENST00000636172 UTP14CQ5TAP6 766 aaKnown RBP22.99■■□□□ 1.27
CLN3-245ENST00000636172 FAM160B1Q5W0V3 765 aa22.99■■□□□ 1.27
CLN3-245ENST00000636172 SH3RF1Q7Z6J0 888 aa22.99■■□□□ 1.27
CLN3-245ENST00000636172 GRAMD1CQ8IYS0 662 aa22.99■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms