RNA–Protein interactions for RNA: ENST00000635893.1

SCN1A-211, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 168 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-211ENST00000635893 NTRK3Q16288 839 aa5.27□□□□□ -1.57
SCN1A-211ENST00000635893 NSMFQ6X4W1 530 aa5.27□□□□□ -1.57
SCN1A-211ENST00000635893 DPH6Q7L8W6 267 aa5.27□□□□□ -1.57
SCN1A-211ENST00000635893 MCF2L2Q86YR7 1114 aa5.27□□□□□ -1.57
SCN1A-211ENST00000635893 HNRNPLLQ8WVV9 542 aaKnown RBP5.27□□□□□ -1.57
SCN1A-211ENST00000635893 EDAQ92838 391 aa5.27□□□□□ -1.57
SCN1A-211ENST00000635893 ARHGEF4Q9NR80 690 aa5.27□□□□□ -1.57
SCN1A-211ENST00000635893 IFRD2Q12894 506 aaPredicted RBP5.26□□□□□ -1.57
SCN1A-211ENST00000635893 MIIPQ5JXC2 388 aa5.26□□□□□ -1.57
SCN1A-211ENST00000635893 DPP8Q6V1X1 898 aaPredicted RBP5.26□□□□□ -1.57
SCN1A-211ENST00000635893 RNF207Q6ZRF8 634 aa5.26□□□□□ -1.57
SCN1A-211ENST00000635893 ANKS3Q6ZW76 656 aa5.26□□□□□ -1.57
SCN1A-211ENST00000635893 ALG1Q9BT22 464 aa5.26□□□□□ -1.57
SCN1A-211ENST00000635893 IPPKQ9H8X2 491 aa5.26□□□□□ -1.57
SCN1A-211ENST00000635893 ING1Q9UK53 422 aaPredicted RBP5.26□□□□□ -1.57
SCN1A-211ENST00000635893 PTPN22Q9Y2R2 807 aa5.26□□□□□ -1.57
SCN1A-211ENST00000635893 ESYT3A0FGR9 886 aa5.25□□□□□ -1.57
SCN1A-211ENST00000635893 NPIPB8E9PQR5 432 aa5.25□□□□□ -1.57
SCN1A-211ENST00000635893 DBPQ10586 325 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-211ENST00000635893 TOP3AQ13472 1001 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-211ENST00000635893 NRN1LQ496H8 165 aa5.25□□□□□ -1.57
SCN1A-211ENST00000635893 ZMAT1Q5H9K5 638 aa5.25□□□□□ -1.57
SCN1A-211ENST00000635893 CRB2Q5IJ48 1285 aa5.25□□□□□ -1.57
SCN1A-211ENST00000635893 AGBL4Q5VU57 503 aa5.25□□□□□ -1.57
SCN1A-211ENST00000635893 FUKQ8N0W3 1084 aa5.25□□□□□ -1.57
SCN1A-211ENST00000635893 NLGN4XQ8N0W4 816 aa5.25□□□□□ -1.57
SCN1A-211ENST00000635893 ST13P5Q8NFI4 369 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-211ENST00000635893 ZNF503Q96F45 646 aa5.25□□□□□ -1.57
SCN1A-211ENST00000635893 TINF2Q9BSI4 451 aa5.25□□□□□ -1.57
SCN1A-211ENST00000635893 CD244Q9BZW8 370 aa5.25□□□□□ -1.57
SCN1A-211ENST00000635893 SLC39A2Q9NP94 309 aa5.25□□□□□ -1.57
SCN1A-211ENST00000635893 TRAV20A0A0B4J274 112 aa5.24□□□□□ -1.57
SCN1A-211ENST00000635893 BLACEA4D250 179 aa5.24□□□□□ -1.57
SCN1A-211ENST00000635893 RAD17O75943 681 aa5.24□□□□□ -1.57
SCN1A-211ENST00000635893 CR2P20023 1033 aa5.24□□□□□ -1.57
SCN1A-211ENST00000635893 USP39Q53GS9 565 aaKnown RBP5.24□□□□□ -1.57
SCN1A-211ENST00000635893 BTBD8Q5XKL5 378 aa5.24□□□□□ -1.57
SCN1A-211ENST00000635893 LRRC47Q8N1G4 583 aaKnown RBP5.24□□□□□ -1.57
SCN1A-211ENST00000635893 SH3RF2Q8TEC5 729 aa5.24□□□□□ -1.57
SCN1A-211ENST00000635893 OAZ3Q9UMX2 235 aa5.24□□□□□ -1.57
SCN1A-211ENST00000635893 TCRBV5S4A2TA0A5A2 114 aa5.23□□□□□ -1.57
SCN1A-211ENST00000635893 KLF4O43474 513 aa5.23□□□□□ -1.57
SCN1A-211ENST00000635893 TCF3P15923 654 aa5.23□□□□□ -1.57
SCN1A-211ENST00000635893 DNAJA1P31689 397 aaKnown RBP5.23□□□□□ -1.57
SCN1A-211ENST00000635893 ETV4P43268 484 aa5.23□□□□□ -1.57
SCN1A-211ENST00000635893 TGFB2P61812 414 aa5.23□□□□□ -1.57
SCN1A-211ENST00000635893 FHL2Q14192 279 aa5.23□□□□□ -1.57
SCN1A-211ENST00000635893 RNF151Q2KHN1 245 aa5.23□□□□□ -1.57
SCN1A-211ENST00000635893 Q6ZSN1 163 aa5.23□□□□□ -1.57
SCN1A-211ENST00000635893 POLNQ7Z5Q5 900 aa5.23□□□□□ -1.57
SCN1A-211ENST00000635893 SCYL1Q96KG9 808 aa5.23□□□□□ -1.57
SCN1A-211ENST00000635893 ARHGAP28Q9P2N2 729 aa5.23□□□□□ -1.57
SCN1A-211ENST00000635893 SRPK3Q9UPE1 567 aa5.23□□□□□ -1.57
SCN1A-211ENST00000635893 SLC30A1Q9Y6M5 507 aa5.23□□□□□ -1.57
SCN1A-211ENST00000635893 ASXL2Q76L83 1435 aa5.23□□□□□ -1.57
SCN1A-211ENST00000635893 PTPN1P18031 435 aaKnown RBP5.22□□□□□ -1.57
SCN1A-211ENST00000635893 ACO1P21399 889 aaKnown RBP5.22□□□□□ -1.57
SCN1A-211ENST00000635893 ABHD18Q0P651 414 aa5.22□□□□□ -1.57
SCN1A-211ENST00000635893 PAK1Q13153 545 aa5.22□□□□□ -1.57
SCN1A-211ENST00000635893 GPR19Q15760 415 aa5.22□□□□□ -1.57
SCN1A-211ENST00000635893 WDR72Q3MJ13 1102 aa5.22□□□□□ -1.57
SCN1A-211ENST00000635893 YOD1Q5VVQ6 348 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-211ENST00000635893 ARHGAP36Q6ZRI8 547 aa5.22□□□□□ -1.57
SCN1A-211ENST00000635893 EXTL1Q92935 676 aa5.22□□□□□ -1.57
SCN1A-211ENST00000635893 ZNF669Q96BR6 464 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-211ENST00000635893 FAM89AQ96GI7 184 aa5.22□□□□□ -1.57
SCN1A-211ENST00000635893 CSRNP2Q9H175 543 aa5.22□□□□□ -1.57
SCN1A-211ENST00000635893 RIC8BQ9NVN3 520 aa5.22□□□□□ -1.57
SCN1A-211ENST00000635893 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP5.21□□□□□ -1.58
SCN1A-211ENST00000635893 FAM90A27PA6NNH2 459 aa5.21□□□□□ -1.58
SCN1A-211ENST00000635893 AQP7O14520 342 aa5.21□□□□□ -1.58
SCN1A-211ENST00000635893 WNT9AO14904 365 aa5.21□□□□□ -1.58
SCN1A-211ENST00000635893 CDC14BO60729 498 aa5.21□□□□□ -1.58
SCN1A-211ENST00000635893 ZNF202O95125 648 aa5.21□□□□□ -1.58
SCN1A-211ENST00000635893 RRADP55042 308 aa5.21□□□□□ -1.58
SCN1A-211ENST00000635893 PTH1RQ03431 593 aa5.21□□□□□ -1.58
SCN1A-211ENST00000635893 NFYCQ13952 458 aa5.21□□□□□ -1.58
SCN1A-211ENST00000635893 MAMDC4Q6UXC1 1216 aa5.21□□□□□ -1.58
SCN1A-211ENST00000635893 CXXC5Q7LFL8 322 aaKnown RBP5.21□□□□□ -1.58
SCN1A-211ENST00000635893 SLC43A3Q8NBI5 491 aa5.21□□□□□ -1.58
SCN1A-211ENST00000635893 GMLQ99445 158 aa5.21□□□□□ -1.58
SCN1A-211ENST00000635893 DPYSL5Q9BPU6 564 aa5.21□□□□□ -1.58
SCN1A-211ENST00000635893 ZDHHC5Q9C0B5 715 aa5.21□□□□□ -1.58
SCN1A-211ENST00000635893 MSL2Q9HCI7 577 aa5.21□□□□□ -1.58
SCN1A-211ENST00000635893 FBXO10Q9UK96 956 aa5.21□□□□□ -1.58
SCN1A-211ENST00000635893 NR2E1Q9Y466 385 aa5.21□□□□□ -1.58
SCN1A-211ENST00000635893 ATP23Q9Y6H3 246 aa5.21□□□□□ -1.58
SCN1A-211ENST00000635893 PLSCR1O15162 318 aa5.2□□□□□ -1.58
SCN1A-211ENST00000635893 ARHGAP6O43182 974 aa5.2□□□□□ -1.58
SCN1A-211ENST00000635893 GJA4P35212 333 aa5.2□□□□□ -1.58
SCN1A-211ENST00000635893 RPS19P39019 145 aaKnown RBP5.2□□□□□ -1.58
SCN1A-211ENST00000635893 NOLC1Q14978 699 aaKnown RBP eCLIP5.2□□□□□ -1.58
SCN1A-211ENST00000635893 LSM12Q3MHD2 195 aaKnown RBP5.2□□□□□ -1.58
SCN1A-211ENST00000635893 FIGNQ5HY92 759 aa5.2□□□□□ -1.58
SCN1A-211ENST00000635893 IGFL4Q6B9Z1 124 aa5.2□□□□□ -1.58
SCN1A-211ENST00000635893 EP400NLQ6ZTU2 488 aa5.2□□□□□ -1.58
SCN1A-211ENST00000635893 MAMDC2Q7Z304 686 aaPredicted RBP5.2□□□□□ -1.58
SCN1A-211ENST00000635893 FBXW5Q969U6 566 aa5.2□□□□□ -1.58
SCN1A-211ENST00000635893 OR14A2Q96R54 314 aa5.2□□□□□ -1.58
SCN1A-211ENST00000635893 PLA2G12BQ9BX93 195 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms