RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 GJB2P29033 226 aa23.4■■□□□ 1.34
CLN3-240ENST00000631023 SFNP31947 248 aa23.4■■□□□ 1.34
CLN3-240ENST00000631023 TDHQ8IZJ6 230 aa23.4■■□□□ 1.34
CLN3-240ENST00000631023 ETNPPLQ8TBG4 499 aa23.4■■□□□ 1.34
CLN3-240ENST00000631023 ZNF302Q9NR11 478 aa23.4■■□□□ 1.34
CLN3-240ENST00000631023 SETD4Q9NVD3 440 aa23.4■■□□□ 1.34
CLN3-240ENST00000631023 SCN5AQ14524 2016 aa23.39■■□□□ 1.33
CLN3-240ENST00000631023 TBX3O15119 743 aa23.39■■□□□ 1.33
CLN3-240ENST00000631023 SLC37A4O43826 429 aa23.39■■□□□ 1.33
CLN3-240ENST00000631023 HOXC8P31273 242 aa23.39■■□□□ 1.33
CLN3-240ENST00000631023 JAK3P52333 1124 aa23.39■■□□□ 1.33
CLN3-240ENST00000631023 ZNF200P98182 395 aaPredicted RBP23.39■■□□□ 1.33
CLN3-240ENST00000631023 SWSAP1Q6NVH7 229 aa23.39■■□□□ 1.33
CLN3-240ENST00000631023 AFAP1L1Q8TED9 768 aa23.39■■□□□ 1.33
CLN3-240ENST00000631023 CTAGE1Q96RT6 745 aa23.39■■□□□ 1.33
CLN3-240ENST00000631023 EVPLQ92817 2033 aa23.39■■□□□ 1.33
CLN3-240ENST00000631023 PSMD10O75832 226 aa23.38■■□□□ 1.33
CLN3-240ENST00000631023 BAG4O95429 457 aaKnown RBP23.38■■□□□ 1.33
CLN3-240ENST00000631023 CCL23P55773 120 aa23.38■■□□□ 1.33
CLN3-240ENST00000631023 PPFIA1Q13136 1202 aa23.38■■□□□ 1.33
CLN3-240ENST00000631023 CUL4AQ13619 759 aa23.38■■□□□ 1.33
CLN3-240ENST00000631023 HABP4Q5JVS0 413 aaKnown RBP23.38■■□□□ 1.33
CLN3-240ENST00000631023 PDXDC2PQ6P474 469 aa23.38■■□□□ 1.33
CLN3-240ENST00000631023 DISC1Q9NRI5 854 aa23.38■■□□□ 1.33
CLN3-240ENST00000631023 TRPC6Q9Y210 931 aa23.38■■□□□ 1.33
CLN3-240ENST00000631023 TANC1Q9C0D5 1861 aa23.38■■□□□ 1.33
CLN3-240ENST00000631023 UMODL1Q5DID0 1318 aa23.38■■□□□ 1.33
CLN3-240ENST00000631023 CSF2RAP15509 400 aa23.37■■□□□ 1.33
CLN3-240ENST00000631023 HIC1Q14526 733 aa23.37■■□□□ 1.33
CLN3-240ENST00000631023 SERINC5Q86VE9 423 aa23.37■■□□□ 1.33
CLN3-240ENST00000631023 RPUSD2Q8IZ73 545 aaKnown RBP23.37■■□□□ 1.33
CLN3-240ENST00000631023 RDM1Q8NG50 284 aa23.37■■□□□ 1.33
CLN3-240ENST00000631023 LMBR1Q8WVP7 490 aa23.37■■□□□ 1.33
CLN3-240ENST00000631023 GJA10Q969M2 543 aa23.37■■□□□ 1.33
CLN3-240ENST00000631023 WNT8AQ9H1J5 351 aa23.37■■□□□ 1.33
CLN3-240ENST00000631023 KCNMB3Q9NPA1 279 aa23.37■■□□□ 1.33
CLN3-240ENST00000631023 RRN3P2A6NIE6 340 aa23.36■■□□□ 1.33
CLN3-240ENST00000631023 H3BQV1 296 aa23.36■■□□□ 1.33
CLN3-240ENST00000631023 TREHO43280 583 aa23.36■■□□□ 1.33
CLN3-240ENST00000631023 CHMP2AO43633 222 aa23.36■■□□□ 1.33
CLN3-240ENST00000631023 PLCB4Q15147 1175 aa23.36■■□□□ 1.33
CLN3-240ENST00000631023 NOSTRINQ8IVI9 506 aa23.36■■□□□ 1.33
CLN3-240ENST00000631023 CCDC60Q8IWA6 550 aaPredicted RBP23.36■■□□□ 1.33
CLN3-240ENST00000631023 SLFN12Q8IYM2 578 aa23.36■■□□□ 1.33
CLN3-240ENST00000631023 UNC45AQ9H3U1 944 aa23.36■■□□□ 1.33
CLN3-240ENST00000631023 MAFBQ9Y5Q3 323 aaPredicted RBP23.36■■□□□ 1.33
CLN3-240ENST00000631023 POTEB3A0JP26 581 aa23.35■■□□□ 1.33
CLN3-240ENST00000631023 RBL2Q08999 1139 aa23.35■■□□□ 1.33
CLN3-240ENST00000631023 GRIK4Q16099 956 aa23.35■■□□□ 1.33
CLN3-240ENST00000631023 POTEBQ6S5H4 581 aa23.35■■□□□ 1.33
CLN3-240ENST00000631023 MIER3Q7Z3K6 550 aa23.35■■□□□ 1.33
CLN3-240ENST00000631023 CKAP2LQ8IYA6 745 aa23.35■■□□□ 1.33
CLN3-240ENST00000631023 IL23AQ9NPF7 189 aa23.35■■□□□ 1.33
CLN3-240ENST00000631023 TET1Q8NFU7 2136 aa23.35■■□□□ 1.33
CLN3-240ENST00000631023 HBP1O60381 514 aa23.35■■□□□ 1.33
CLN3-240ENST00000631023 PARNO95453 639 aaKnown RBP23.35■■□□□ 1.33
CLN3-240ENST00000631023 IQCF3P0C7M6 154 aa23.35■■□□□ 1.33
CLN3-240ENST00000631023 CKBP12277 381 aa23.35■■□□□ 1.33
CLN3-240ENST00000631023 INSRRP14616 1297 aa23.35■■□□□ 1.33
CLN3-240ENST00000631023 ATP2B1P20020 1258 aa23.35■■□□□ 1.33
CLN3-240ENST00000631023 U2AF2P26368 475 aaKnown RBP eCLIP23.35■■□□□ 1.33
CLN3-240ENST00000631023 RFC2P35250 354 aa23.35■■□□□ 1.33
CLN3-240ENST00000631023 ADAM17P78536 824 aa23.35■■□□□ 1.33
CLN3-240ENST00000631023 LARP1BQ659C4 914 aaKnown RBP23.35■■□□□ 1.33
CLN3-240ENST00000631023 POTEDQ86YR6 584 aa23.35■■□□□ 1.33
CLN3-240ENST00000631023 DHX38Q92620 1227 aaKnown RBP23.35■■□□□ 1.33
CLN3-240ENST00000631023 SNX21Q969T3 373 aa23.35■■□□□ 1.33
CLN3-240ENST00000631023 SCLYQ96I15 445 aa23.35■■□□□ 1.33
CLN3-240ENST00000631023 GABBR1Q9UBS5 961 aa23.35■■□□□ 1.33
CLN3-240ENST00000631023 NOL7Q9UMY1 257 aaKnown RBP23.35■■□□□ 1.33
CLN3-240ENST00000631023 K7ELQ4 463 aaPredicted RBP23.34■■□□□ 1.33
CLN3-240ENST00000631023 SELPP16109 830 aa23.34■■□□□ 1.33
CLN3-240ENST00000631023 TRAPPC10P48553 1259 aa23.34■■□□□ 1.33
CLN3-240ENST00000631023 SHHQ15465 462 aa23.34■■□□□ 1.33
CLN3-240ENST00000631023 CALCRLQ16602 461 aa23.34■■□□□ 1.33
CLN3-240ENST00000631023 MCTP1Q6DN14 999 aa23.34■■□□□ 1.33
CLN3-240ENST00000631023 ATP8B4Q8TF62 1192 aa23.34■■□□□ 1.33
CLN3-240ENST00000631023 HAS1Q92839 578 aa23.34■■□□□ 1.33
CLN3-240ENST00000631023 NEMFO60524 1076 aa23.33■■□□□ 1.33
CLN3-240ENST00000631023 EPHB4P54760 987 aa23.33■■□□□ 1.33
CLN3-240ENST00000631023 IGBP1P78318 339 aa23.33■■□□□ 1.33
CLN3-240ENST00000631023 PPP2R5CQ13362 524 aa23.33■■□□□ 1.33
CLN3-240ENST00000631023 PSRC1Q6PGN9 363 aaPredicted RBP23.33■■□□□ 1.33
CLN3-240ENST00000631023 B3GNT9Q6UX72 402 aa23.33■■□□□ 1.33
CLN3-240ENST00000631023 LRRC8DQ7L1W4 858 aa23.33■■□□□ 1.33
CLN3-240ENST00000631023 TUBE1Q9UJT0 475 aa23.33■■□□□ 1.33
CLN3-240ENST00000631023 CAND2O75155 1236 aa23.32■■□□□ 1.32
CLN3-240ENST00000631023 PFKMP08237 780 aa23.32■■□□□ 1.32
CLN3-240ENST00000631023 THPOP40225 353 aa23.32■■□□□ 1.32
CLN3-240ENST00000631023 ORC2Q13416 577 aaPredicted RBP23.32■■□□□ 1.32
CLN3-240ENST00000631023 TAF2Q6P1X5 1199 aa23.32■■□□□ 1.32
CLN3-240ENST00000631023 BBXQ8WY36 941 aaPredicted RBP23.32■■□□□ 1.32
CLN3-240ENST00000631023 INTS4Q96HW7 963 aaKnown RBP23.32■■□□□ 1.32
CLN3-240ENST00000631023 FAM167AQ96KS9 214 aa23.32■■□□□ 1.32
CLN3-240ENST00000631023 IGSF9BQ9UPX0 1349 aa23.31■■□□□ 1.32
CLN3-240ENST00000631023 MBLAC1A4D2B0 266 aaPredicted RBP23.31■■□□□ 1.32
CLN3-240ENST00000631023 KIF28PB7ZC32 967 aa23.31■■□□□ 1.32
CLN3-240ENST00000631023 MCM7P33993 719 aa23.31■■□□□ 1.32
CLN3-240ENST00000631023 TRIM71Q2Q1W2 868 aaKnown RBP23.31■■□□□ 1.32
CLN3-240ENST00000631023 ZNF484Q5JVG2 852 aa23.31■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms