RNA–Protein interactions for RNA: ENST00000627000.1

CHRNA4-209, Transcript of cholinergic receptor nicotinic alpha 4 subunit, humanhuman

TSL 1 (best)

Gene CHRNA4, Length 2,192 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4-209ENST00000627000 NSMFQ6X4W1 530 aa21.74■■□□□ 1.07
CHRNA4-209ENST00000627000 KRT26Q7Z3Y9 468 aa21.74■■□□□ 1.07
CHRNA4-209ENST00000627000 BANK1Q8NDB2 785 aa21.74■■□□□ 1.07
CHRNA4-209ENST00000627000 NUP58Q9BVL2 599 aa21.74■■□□□ 1.07
CHRNA4-209ENST00000627000 ZNF215Q9UL58 517 aaPredicted RBP21.74■■□□□ 1.07
CHRNA4-209ENST00000627000 UBIAD1Q9Y5Z9 338 aa21.74■■□□□ 1.07
CHRNA4-209ENST00000627000 EPHB6O15197 1021 aa21.73■■□□□ 1.07
CHRNA4-209ENST00000627000 PRPF6O94906 941 aaKnown RBP21.73■■□□□ 1.07
CHRNA4-209ENST00000627000 BCRP11274 1271 aa21.73■■□□□ 1.07
CHRNA4-209ENST00000627000 PCNX4Q63HM2 1172 aa21.73■■□□□ 1.07
CHRNA4-209ENST00000627000 C1orf186Q6ZWK4 172 aa21.73■■□□□ 1.07
CHRNA4-209ENST00000627000 EPM2AIP1Q7L775 607 aaPredicted RBP21.73■■□□□ 1.07
CHRNA4-209ENST00000627000 CCDC155Q8N6L0 562 aa21.73■■□□□ 1.07
CHRNA4-209ENST00000627000 PKNOX2Q96KN3 472 aa21.73■■□□□ 1.07
CHRNA4-209ENST00000627000 RIT2Q99578 217 aa21.73■■□□□ 1.07
CHRNA4-209ENST00000627000 L2HGDHQ9H9P8 463 aa21.73■■□□□ 1.07
CHRNA4-209ENST00000627000 SIK3Q9Y2K2 1263 aa21.73■■□□□ 1.07
CHRNA4-209ENST00000627000 DHX15O43143 795 aaKnown RBP21.72■■□□□ 1.07
CHRNA4-209ENST00000627000 ITGB3BPQ13352 177 aaPredicted RBP21.72■■□□□ 1.07
CHRNA4-209ENST00000627000 PGM5Q15124 567 aa21.72■■□□□ 1.07
CHRNA4-209ENST00000627000 CCDC40Q4G0X9 1142 aa21.72■■□□□ 1.07
CHRNA4-209ENST00000627000 RNF207Q6ZRF8 634 aa21.72■■□□□ 1.07
CHRNA4-209ENST00000627000 REPS2Q8NFH8 660 aa21.72■■□□□ 1.07
CHRNA4-209ENST00000627000 LXNQ9BS40 222 aa21.72■■□□□ 1.07
CHRNA4-209ENST00000627000 TBCAO75347 108 aaKnown RBP21.72■■□□□ 1.07
CHRNA4-209ENST00000627000 KIF20AO95235 890 aa21.72■■□□□ 1.07
CHRNA4-209ENST00000627000 KCTD17Q8N5Z5 321 aa21.72■■□□□ 1.07
CHRNA4-209ENST00000627000 RETREG2Q8NC44 543 aa21.72■■□□□ 1.07
CHRNA4-209ENST00000627000 CEP63Q96MT8 703 aa21.72■■□□□ 1.07
CHRNA4-209ENST00000627000 FHDC1Q9C0D6 1143 aaPredicted RBP21.72■■□□□ 1.07
CHRNA4-209ENST00000627000 RNF146Q9NTX7 359 aa21.72■■□□□ 1.07
CHRNA4-209ENST00000627000 FRMPD4Q14CM0 1322 aa21.72■■□□□ 1.07
CHRNA4-209ENST00000627000 ABL1P00519 1130 aa21.71■■□□□ 1.07
CHRNA4-209ENST00000627000 MYCLP12524 364 aaPredicted RBP21.71■■□□□ 1.07
CHRNA4-209ENST00000627000 C12orf42Q96LP6 360 aa21.71■■□□□ 1.07
CHRNA4-209ENST00000627000 RMDN3Q96TC7 470 aa21.71■■□□□ 1.07
CHRNA4-209ENST00000627000 AGO4Q9HCK5 861 aaKnown RBP21.71■■□□□ 1.07
CHRNA4-209ENST00000627000 JADE2Q9NQC1 790 aa21.71■■□□□ 1.07
CHRNA4-209ENST00000627000 DSG3P32926 999 aa21.71■■□□□ 1.07
CHRNA4-209ENST00000627000 ZBED6P86452 979 aa21.71■■□□□ 1.07
CHRNA4-209ENST00000627000 ADAM9Q13443 819 aa21.71■■□□□ 1.07
CHRNA4-209ENST00000627000 NIPA1Q7RTP0 329 aa21.71■■□□□ 1.07
CHRNA4-209ENST00000627000 SMCR8Q8TEV9 937 aaPredicted RBP21.71■■□□□ 1.07
CHRNA4-209ENST00000627000 NACC1Q96RE7 527 aa21.71■■□□□ 1.07
CHRNA4-209ENST00000627000 FAM207AQ9NSI2 230 aaPredicted RBP21.71■■□□□ 1.07
CHRNA4-209ENST00000627000 MAP3K20Q9NYL2 800 aaKnown RBP21.71■■□□□ 1.07
CHRNA4-209ENST00000627000 NCBP1Q09161 790 aaKnown RBP21.7■■□□□ 1.06
CHRNA4-209ENST00000627000 KCNA1Q09470 495 aa21.7■■□□□ 1.06
CHRNA4-209ENST00000627000 MTMR1Q13613 665 aa21.7■■□□□ 1.06
CHRNA4-209ENST00000627000 BAATQ14032 418 aaPredicted RBP21.7■■□□□ 1.06
CHRNA4-209ENST00000627000 KNOP1Q1ED39 458 aaKnown RBP21.7■■□□□ 1.06
CHRNA4-209ENST00000627000 FIGNQ5HY92 759 aa21.7■■□□□ 1.06
CHRNA4-209ENST00000627000 SNRNP48Q6IEG0 339 aaKnown RBP21.7■■□□□ 1.06
CHRNA4-209ENST00000627000 MIER3Q7Z3K6 550 aa21.7■■□□□ 1.06
CHRNA4-209ENST00000627000 ZC3H3Q8IXZ2 948 aaKnown RBP21.7■■□□□ 1.06
CHRNA4-209ENST00000627000 LRRN4CLQ8ND94 238 aa21.7■■□□□ 1.06
CHRNA4-209ENST00000627000 MMRN2Q9H8L6 949 aa21.7■■□□□ 1.06
CHRNA4-209ENST00000627000 PXMP2Q9NR77 195 aa21.7■■□□□ 1.06
CHRNA4-209ENST00000627000 REXO2Q9Y3B8 237 aaKnown RBP21.7■■□□□ 1.06
CHRNA4-209ENST00000627000 PPP2R3BQ9Y5P8 575 aa21.7■■□□□ 1.06
CHRNA4-209ENST00000627000 EPN1Q9Y6I3 576 aaPredicted RBP21.7■■□□□ 1.06
CHRNA4-209ENST00000627000 C19orf81C9J6K1 198 aa21.7■■□□□ 1.06
CHRNA4-209ENST00000627000 FAM13AO94988 1023 aa21.7■■□□□ 1.06
CHRNA4-209ENST00000627000 GCNT3O95395 438 aa21.7■■□□□ 1.06
CHRNA4-209ENST00000627000 FDX1P10109 184 aa21.7■■□□□ 1.06
CHRNA4-209ENST00000627000 MEA1Q16626 185 aa21.7■■□□□ 1.06
CHRNA4-209ENST00000627000 TSR1Q2NL82 804 aaKnown RBP21.7■■□□□ 1.06
CHRNA4-209ENST00000627000 PDCD2LQ9BRP1 358 aa21.7■■□□□ 1.06
CHRNA4-209ENST00000627000 SPON1Q9HCB6 807 aa21.7■■□□□ 1.06
CHRNA4-209ENST00000627000 NOL12Q9UGY1 213 aaKnown RBP eCLIP21.7■■□□□ 1.06
CHRNA4-209ENST00000627000 V9GYY5 206 aaPredicted RBP21.7■■□□□ 1.06
CHRNA4-209ENST00000627000 USP2O75604 605 aaPredicted RBP21.69■■□□□ 1.06
CHRNA4-209ENST00000627000 URI1O94763 535 aaPredicted RBP21.69■■□□□ 1.06
CHRNA4-209ENST00000627000 NDUFA10O95299 355 aa21.69■■□□□ 1.06
CHRNA4-209ENST00000627000 SLU7O95391 586 aaKnown RBP21.69■■□□□ 1.06
CHRNA4-209ENST00000627000 MUTP22033 750 aa21.69■■□□□ 1.06
CHRNA4-209ENST00000627000 NR2F2P24468 414 aa21.69■■□□□ 1.06
CHRNA4-209ENST00000627000 EDRF1Q3B7T1 1238 aa21.69■■□□□ 1.06
CHRNA4-209ENST00000627000 DDX55Q8NHQ9 600 aaKnown RBP eCLIP21.69■■□□□ 1.06
CHRNA4-209ENST00000627000 ZNF214Q9UL59 606 aaPredicted RBP21.69■■□□□ 1.06
CHRNA4-209ENST00000627000 A0A1W2PQJ5 194 aa21.68■■□□□ 1.06
CHRNA4-209ENST00000627000 NMT1P30419 496 aaKnown RBP21.68■■□□□ 1.06
CHRNA4-209ENST00000627000 CASQ1P31415 396 aa21.68■■□□□ 1.06
CHRNA4-209ENST00000627000 KCNMA1Q12791 1236 aa21.68■■□□□ 1.06
CHRNA4-209ENST00000627000 TMEM132BQ14DG7 1078 aa21.68■■□□□ 1.06
CHRNA4-209ENST00000627000 SUPT20HL1Q3ZLR7 823 aa21.68■■□□□ 1.06
CHRNA4-209ENST00000627000 PPP4R3CPQ6ZMV5 832 aa21.68■■□□□ 1.06
CHRNA4-209ENST00000627000 TRIM59Q8IWR1 403 aa21.68■■□□□ 1.06
CHRNA4-209ENST00000627000 MYCT1Q8N699 235 aa21.68■■□□□ 1.06
CHRNA4-209ENST00000627000 IKZF4Q9H2S9 585 aa21.68■■□□□ 1.06
CHRNA4-209ENST00000627000 ADAMTS5Q9UNA0 930 aa21.68■■□□□ 1.06
CHRNA4-209ENST00000627000 TRAF3IP3Q9Y228 551 aa21.68■■□□□ 1.06
CHRNA4-209ENST00000627000 AFG3L2Q9Y4W6 797 aa21.68■■□□□ 1.06
CHRNA4-209ENST00000627000 ATP9AO75110 1047 aa21.68■■□□□ 1.06
CHRNA4-209ENST00000627000 MARSP56192 900 aaKnown RBP21.68■■□□□ 1.06
CHRNA4-209ENST00000627000 COG2Q14746 738 aa21.68■■□□□ 1.06
CHRNA4-209ENST00000627000 NOL9Q5SY16 702 aaKnown RBP21.68■■□□□ 1.06
CHRNA4-209ENST00000627000 ARHGEF16Q5VV41 709 aa21.68■■□□□ 1.06
CHRNA4-209ENST00000627000 CATSPERGQ6ZRH7 1159 aa21.68■■□□□ 1.06
CHRNA4-209ENST00000627000 SAMD3Q8N6K7 520 aa21.68■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms