RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 ACCSLQ4AC99 568 aa15.43■□□□□ 0.06
LDB3-209ENST00000623056 HIBCHQ6NVY1 386 aaPredicted RBP15.43■□□□□ 0.06
LDB3-209ENST00000623056 FOXR2Q6PJQ5 311 aa15.43■□□□□ 0.06
LDB3-209ENST00000623056 MYOCDQ8IZQ8 938 aa15.43■□□□□ 0.06
LDB3-209ENST00000623056 METTL13Q8N6R0 699 aa15.43■□□□□ 0.06
LDB3-209ENST00000623056 CCDC197Q8NCU1 140 aa15.43■□□□□ 0.06
LDB3-209ENST00000623056 TLCD1Q96CP7 247 aa15.43■□□□□ 0.06
LDB3-209ENST00000623056 TBC1D31Q96DN5 1066 aa15.43■□□□□ 0.06
LDB3-209ENST00000623056 CDK5RAP3Q96JB5 506 aa15.43■□□□□ 0.06
LDB3-209ENST00000623056 FAM129AQ9BZQ8 928 aa15.43■□□□□ 0.06
LDB3-209ENST00000623056 KANSL2Q9H9L4 492 aa15.43■□□□□ 0.06
LDB3-209ENST00000623056 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.43■□□□□ 0.06
LDB3-209ENST00000623056 KIAA1551Q9HCM1 1747 aa15.42■□□□□ 0.06
LDB3-209ENST00000623056 RTN2O75298 545 aa15.42■□□□□ 0.06
LDB3-209ENST00000623056 NEBLO76041 1014 aa15.42■□□□□ 0.06
LDB3-209ENST00000623056 KIRREL3Q8IZU9 778 aa15.42■□□□□ 0.06
LDB3-209ENST00000623056 RAD54LQ92698 747 aa15.42■□□□□ 0.06
LDB3-209ENST00000623056 DDX12PQ92771 950 aa15.42■□□□□ 0.06
LDB3-209ENST00000623056 CUL5Q93034 780 aa15.42■□□□□ 0.06
LDB3-209ENST00000623056 BAIAP2L1Q9UHR4 511 aa15.42■□□□□ 0.06
LDB3-209ENST00000623056 CCDC188H7C350 402 aa15.42■□□□□ 0.06
LDB3-209ENST00000623056 TTI1O43156 1089 aa15.42■□□□□ 0.06
LDB3-209ENST00000623056 PSMD2Q13200 908 aa15.42■□□□□ 0.06
LDB3-209ENST00000623056 PPP2R5AQ15172 486 aa15.42■□□□□ 0.06
LDB3-209ENST00000623056 CAVIN4Q5BKX8 364 aa15.42■□□□□ 0.06
LDB3-209ENST00000623056 TBCKQ8TEA7 893 aa15.42■□□□□ 0.06
LDB3-209ENST00000623056 CENPTQ96BT3 561 aa15.42■□□□□ 0.06
LDB3-209ENST00000623056 DOT1LQ8TEK3 1739 aa15.41■□□□□ 0.06
LDB3-209ENST00000623056 SMCO2A6NFE2 343 aa15.41■□□□□ 0.06
LDB3-209ENST00000623056 CTNND1O60716 968 aaKnown RBP15.41■□□□□ 0.06
LDB3-209ENST00000623056 USP17L8P0C7I0 530 aa15.41■□□□□ 0.06
LDB3-209ENST00000623056 GOLGA8HP0CJ92 632 aa15.41■□□□□ 0.06
LDB3-209ENST00000623056 SATB1Q01826 763 aa15.41■□□□□ 0.06
LDB3-209ENST00000623056 NAA25Q14CX7 972 aa15.41■□□□□ 0.06
LDB3-209ENST00000623056 CHADLQ6NUI6 762 aa15.41■□□□□ 0.06
LDB3-209ENST00000623056 DNAAF5Q86Y56 855 aa15.41■□□□□ 0.06
LDB3-209ENST00000623056 SEC14L1Q92503 715 aa15.41■□□□□ 0.06
LDB3-209ENST00000623056 ZNF317Q96PQ6 595 aaPredicted RBP15.41■□□□□ 0.06
LDB3-209ENST00000623056 GANQ9H2C0 597 aa15.41■□□□□ 0.06
LDB3-209ENST00000623056 DPH5Q9H2P9 285 aa15.41■□□□□ 0.06
LDB3-209ENST00000623056 CPVLQ9H3G5 476 aa15.41■□□□□ 0.06
LDB3-209ENST00000623056 SLITRK6Q9H5Y7 841 aa15.41■□□□□ 0.06
LDB3-209ENST00000623056 C6orf50Q9HD87 102 aa15.41■□□□□ 0.06
LDB3-209ENST00000623056 MCM9Q9NXL9 1143 aa15.41■□□□□ 0.06
LDB3-209ENST00000623056 PNMA2Q9UL42 364 aa15.41■□□□□ 0.06
LDB3-209ENST00000623056 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.41■□□□□ 0.06
LDB3-209ENST00000623056 USP17L3A6NCW0 530 aa15.4■□□□□ 0.06
LDB3-209ENST00000623056 USP17L4A6NCW7 530 aa15.4■□□□□ 0.06
LDB3-209ENST00000623056 PTK2Q05397 1052 aa15.4■□□□□ 0.06
LDB3-209ENST00000623056 IFI16Q16666 785 aaKnown RBP15.4■□□□□ 0.06
LDB3-209ENST00000623056 C10orf76Q5T2E6 689 aa15.4■□□□□ 0.06
LDB3-209ENST00000623056 USP17L1Q7RTZ2 530 aa15.4■□□□□ 0.06
LDB3-209ENST00000623056 KCNK18Q7Z418 384 aa15.4■□□□□ 0.06
LDB3-209ENST00000623056 FMNL3Q8IVF7 1028 aa15.4■□□□□ 0.06
LDB3-209ENST00000623056 TRIM59Q8IWR1 403 aa15.4■□□□□ 0.06
LDB3-209ENST00000623056 MARCH10Q8NA82 808 aaPredicted RBP15.4■□□□□ 0.06
LDB3-209ENST00000623056 FAM84BQ96KN1 310 aaPredicted RBP15.4■□□□□ 0.06
LDB3-209ENST00000623056 MTMR9Q96QG7 549 aa15.4■□□□□ 0.06
LDB3-209ENST00000623056 CELF4Q9BZC1 486 aaKnown RBP15.4■□□□□ 0.06
LDB3-209ENST00000623056 TRIM6Q9C030 488 aaPredicted RBP15.4■□□□□ 0.06
LDB3-209ENST00000623056 SLC12A4Q9UP95 1085 aa15.4■□□□□ 0.06
LDB3-209ENST00000623056 SPATA31A5Q5VU36 1347 aa15.4■□□□□ 0.06
LDB3-209ENST00000623056 SPATA31A7Q8IWB4 1347 aa15.4■□□□□ 0.06
LDB3-209ENST00000623056 PALM3A6NDB9 673 aaPredicted RBP15.4■□□□□ 0.06
LDB3-209ENST00000623056 BUB1BO60566 1050 aaPredicted RBP15.4■□□□□ 0.06
LDB3-209ENST00000623056 CAND2O75155 1236 aa15.4■□□□□ 0.06
LDB3-209ENST00000623056 SLC8A3P57103 927 aa15.4■□□□□ 0.06
LDB3-209ENST00000623056 ZNF571Q7Z3V5 609 aaPredicted RBP15.4■□□□□ 0.06
LDB3-209ENST00000623056 CCDC63Q8NA47 563 aa15.4■□□□□ 0.06
LDB3-209ENST00000623056 CCDC26Q8TAB7 109 aa15.4■□□□□ 0.06
LDB3-209ENST00000623056 TBC1D22AQ8WUA7 517 aa15.4■□□□□ 0.06
LDB3-209ENST00000623056 STAMBPL1Q96FJ0 436 aa15.4■□□□□ 0.06
LDB3-209ENST00000623056 DYNLL2Q96FJ2 89 aa15.4■□□□□ 0.06
LDB3-209ENST00000623056 RSRC1Q96IZ7 334 aaKnown RBP15.4■□□□□ 0.06
LDB3-209ENST00000623056 CEP63Q96MT8 703 aa15.4■□□□□ 0.06
LDB3-209ENST00000623056 C8orf37Q96NL8 207 aa15.4■□□□□ 0.06
LDB3-209ENST00000623056 FAM114A2Q9NRY5 505 aa15.4■□□□□ 0.06
LDB3-209ENST00000623056 PPFIA2O75334 1257 aa15.39■□□□□ 0.05
LDB3-209ENST00000623056 GSTA1P08263 222 aa15.39■□□□□ 0.05
LDB3-209ENST00000623056 HOXA7P31268 230 aaPredicted RBP15.39■□□□□ 0.05
LDB3-209ENST00000623056 FXR2P51116 673 aaKnown RBP eCLIP15.39■□□□□ 0.05
LDB3-209ENST00000623056 COASYQ13057 564 aa15.39■□□□□ 0.05
LDB3-209ENST00000623056 UBE4AQ14139 1066 aa15.39■□□□□ 0.05
LDB3-209ENST00000623056 CALCRLQ16602 461 aa15.39■□□□□ 0.05
LDB3-209ENST00000623056 RASGEF1CQ8N431 466 aa15.39■□□□□ 0.05
LDB3-209ENST00000623056 ANKS4BQ8N8V4 417 aa15.39■□□□□ 0.05
LDB3-209ENST00000623056 TPCN2Q8NHX9 752 aa15.39■□□□□ 0.05
LDB3-209ENST00000623056 HOOK2Q96ED9 719 aa15.39■□□□□ 0.05
LDB3-209ENST00000623056 NUDT12Q9BQG2 462 aa15.39■□□□□ 0.05
LDB3-209ENST00000623056 EBF2Q9HAK2 575 aa15.39■□□□□ 0.05
LDB3-209ENST00000623056 ATP8A1Q9Y2Q0 1164 aa15.39■□□□□ 0.05
LDB3-209ENST00000623056 SCN7AQ01118 1682 aa15.39■□□□□ 0.05
LDB3-209ENST00000623056 POTEMA6NI47 508 aa15.39■□□□□ 0.05
LDB3-209ENST00000623056 CHN1P15882 459 aa15.39■□□□□ 0.05
LDB3-209ENST00000623056 GNA11P29992 359 aa15.39■□□□□ 0.05
LDB3-209ENST00000623056 EIF3BP55884 814 aaKnown RBP15.39■□□□□ 0.05
LDB3-209ENST00000623056 CRELD2Q6UXH1 353 aaPredicted RBP15.39■□□□□ 0.05
LDB3-209ENST00000623056 PEX26Q7Z412 305 aa15.39■□□□□ 0.05
LDB3-209ENST00000623056 IRF2BP2Q7Z5L9 587 aa15.39■□□□□ 0.05
LDB3-209ENST00000623056 TCP11Q8WWU5 503 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms