RNA–Protein interactions for RNA: ENST00000621245.4

CPNE3-210, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 581 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-210ENST00000621245 TNFRSF10AO00220 468 aa13.14□□□□□ -0.31
CPNE3-210ENST00000621245 BMP1P13497 986 aa13.14□□□□□ -0.31
CPNE3-210ENST00000621245 TCF7P36402 384 aaPredicted RBP13.14□□□□□ -0.31
CPNE3-210ENST00000621245 EXOSC10Q01780 885 aaKnown RBP13.14□□□□□ -0.31
CPNE3-210ENST00000621245 IKBKEQ14164 716 aa13.14□□□□□ -0.31
CPNE3-210ENST00000621245 SKIV2LQ15477 1246 aaKnown RBP13.14□□□□□ -0.31
CPNE3-210ENST00000621245 MYOCDQ8IZQ8 938 aa13.14□□□□□ -0.31
CPNE3-210ENST00000621245 SYMPKQ92797 1274 aaKnown RBP13.14□□□□□ -0.31
CPNE3-210ENST00000621245 UHRF1Q96T88 793 aaPredicted RBP13.14□□□□□ -0.31
CPNE3-210ENST00000621245 PCYT2Q99447 389 aa13.14□□□□□ -0.31
CPNE3-210ENST00000621245 RAD9AQ99638 391 aa13.14□□□□□ -0.31
CPNE3-210ENST00000621245 LZTS2Q9BRK4 669 aa13.14□□□□□ -0.31
CPNE3-210ENST00000621245 SUGCTQ9HAC7 445 aa13.14□□□□□ -0.31
CPNE3-210ENST00000621245 FAM217BQ9NTX9 383 aaPredicted RBP13.14□□□□□ -0.31
CPNE3-210ENST00000621245 TMEM260Q9NX78 707 aa13.14□□□□□ -0.31
CPNE3-210ENST00000621245 RAPGEFL1Q9UHV5 662 aa13.14□□□□□ -0.31
CPNE3-210ENST00000621245 PCDHA6Q9UN73 950 aa13.14□□□□□ -0.31
CPNE3-210ENST00000621245 PCDHA8Q9Y5H6 950 aa13.14□□□□□ -0.31
CPNE3-210ENST00000621245 TTC3P53804 2025 aa13.13□□□□□ -0.31
CPNE3-210ENST00000621245 CHRNA1P02708 482 aa13.13□□□□□ -0.31
CPNE3-210ENST00000621245 CDC27P30260 824 aa13.13□□□□□ -0.31
CPNE3-210ENST00000621245 GNAQP50148 359 aa13.13□□□□□ -0.31
CPNE3-210ENST00000621245 GPRASP2Q96D09 838 aa13.13□□□□□ -0.31
CPNE3-210ENST00000621245 SENP7Q9BQF6 1050 aa13.13□□□□□ -0.31
CPNE3-210ENST00000621245 USP26Q9BXU7 913 aa13.13□□□□□ -0.31
CPNE3-210ENST00000621245 EMSYQ7Z589 1322 aa13.13□□□□□ -0.31
CPNE3-210ENST00000621245 STXBP3O00186 592 aa13.12□□□□□ -0.31
CPNE3-210ENST00000621245 GALR2O43603 387 aaPredicted RBP13.12□□□□□ -0.31
CPNE3-210ENST00000621245 PARNO95453 639 aaKnown RBP13.12□□□□□ -0.31
CPNE3-210ENST00000621245 CALM1P0DP23 149 aa13.12□□□□□ -0.31
CPNE3-210ENST00000621245 CALM2P0DP24 149 aa13.12□□□□□ -0.31
CPNE3-210ENST00000621245 CALM3P0DP25 149 aa13.12□□□□□ -0.31
CPNE3-210ENST00000621245 ERVK-21P61565 698 aa13.12□□□□□ -0.31
CPNE3-210ENST00000621245 HTRA4P83105 476 aaPredicted RBP13.12□□□□□ -0.31
CPNE3-210ENST00000621245 MGAT3Q09327 533 aa13.12□□□□□ -0.31
CPNE3-210ENST00000621245 MTMR1Q13613 665 aa13.12□□□□□ -0.31
CPNE3-210ENST00000621245 MARCH8Q5T0T0 291 aa13.12□□□□□ -0.31
CPNE3-210ENST00000621245 XRRA1Q6P2D8 792 aa13.12□□□□□ -0.31
CPNE3-210ENST00000621245 CENPQQ7L2Z9 268 aaPredicted RBP13.12□□□□□ -0.31
CPNE3-210ENST00000621245 NLRX1Q86UT6 975 aa13.12□□□□□ -0.31
CPNE3-210ENST00000621245 NEK1Q96PY6 1258 aa13.12□□□□□ -0.31
CPNE3-210ENST00000621245 UIMC1Q96RL1 719 aa13.12□□□□□ -0.31
CPNE3-210ENST00000621245 JADE2Q9NQC1 790 aa13.12□□□□□ -0.31
CPNE3-210ENST00000621245 PLXNA4Q9HCM2 1894 aa13.12□□□□□ -0.31
CPNE3-210ENST00000621245 FNDC1Q4ZHG4 1894 aaPredicted RBP13.11□□□□□ -0.31
CPNE3-210ENST00000621245 KLF18A0A0U1RQI7 1052 aa13.11□□□□□ -0.31
CPNE3-210ENST00000621245 UPP2O95045 317 aa13.11□□□□□ -0.31
CPNE3-210ENST00000621245 ARP10275 920 aa13.11□□□□□ -0.31
CPNE3-210ENST00000621245 GHRP10912 638 aa13.11□□□□□ -0.31
CPNE3-210ENST00000621245 IGBP1P78318 339 aa13.11□□□□□ -0.31
CPNE3-210ENST00000621245 PPFIA1Q13136 1202 aa13.11□□□□□ -0.31
CPNE3-210ENST00000621245 ITGB3BPQ13352 177 aaPredicted RBP13.11□□□□□ -0.31
CPNE3-210ENST00000621245 LPIN1Q14693 890 aa13.11□□□□□ -0.31
CPNE3-210ENST00000621245 GRIK4Q16099 956 aa13.11□□□□□ -0.31
CPNE3-210ENST00000621245 RTN1Q16799 776 aa13.11□□□□□ -0.31
CPNE3-210ENST00000621245 FAM26DQ5JW98 314 aa13.11□□□□□ -0.31
CPNE3-210ENST00000621245 TMTC2Q8N394 836 aa13.11□□□□□ -0.31
CPNE3-210ENST00000621245 SP7Q8TDD2 431 aaPredicted RBP13.11□□□□□ -0.31
CPNE3-210ENST00000621245 TRAPPC12Q8WVT3 735 aa13.11□□□□□ -0.31
CPNE3-210ENST00000621245 LINC01599Q8WXQ3 324 aa13.11□□□□□ -0.31
CPNE3-210ENST00000621245 TGS1Q96RS0 853 aaKnown RBP13.11□□□□□ -0.31
CPNE3-210ENST00000621245 ZNF215Q9UL58 517 aaPredicted RBP13.11□□□□□ -0.31
CPNE3-210ENST00000621245 SPDYE3A6NKU9 549 aa13.1□□□□□ -0.31
CPNE3-210ENST00000621245 GOLGA8AA7E2F4 631 aa13.1□□□□□ -0.31
CPNE3-210ENST00000621245 GOLGA8BA8MQT2 603 aa13.1□□□□□ -0.31
CPNE3-210ENST00000621245 ZBTB43O43298 467 aa13.1□□□□□ -0.31
CPNE3-210ENST00000621245 PPFIA3O75145 1194 aa13.1□□□□□ -0.31
CPNE3-210ENST00000621245 CDC45O75419 566 aa13.1□□□□□ -0.31
CPNE3-210ENST00000621245 AMHP03971 560 aa13.1□□□□□ -0.31
CPNE3-210ENST00000621245 NAPAP54920 295 aa13.1□□□□□ -0.31
CPNE3-210ENST00000621245 DHX32Q7L7V1 743 aaKnown RBP13.1□□□□□ -0.31
CPNE3-210ENST00000621245 DNAJB3Q8WWF6 145 aa13.1□□□□□ -0.31
CPNE3-210ENST00000621245 SEPT8Q92599 483 aa13.1□□□□□ -0.31
CPNE3-210ENST00000621245 RIC8AQ9NPQ8 531 aa13.1□□□□□ -0.31
CPNE3-210ENST00000621245 KCNH7Q9NS40 1196 aa13.1□□□□□ -0.31
CPNE3-210ENST00000621245 V9GY48 417 aaPredicted RBP13.1□□□□□ -0.31
CPNE3-210ENST00000621245 EFCAB14O75071 495 aa13.09□□□□□ -0.31
CPNE3-210ENST00000621245 LINC00271P0C7V0 271 aa13.09□□□□□ -0.31
CPNE3-210ENST00000621245 ADD1P35611 737 aaKnown RBP13.09□□□□□ -0.31
CPNE3-210ENST00000621245 CLK2P49760 499 aaKnown RBP13.09□□□□□ -0.31
CPNE3-210ENST00000621245 FOXK1P85037 733 aa13.09□□□□□ -0.31
CPNE3-210ENST00000621245 TMEM62Q0P6H9 643 aa13.09□□□□□ -0.31
CPNE3-210ENST00000621245 APOBRQ0VD83 1088 aa13.09□□□□□ -0.31
CPNE3-210ENST00000621245 PDCD7Q8N8D1 485 aaKnown RBP13.09□□□□□ -0.31
CPNE3-210ENST00000621245 SEPT1Q8WYJ6 367 aa13.09□□□□□ -0.31
CPNE3-210ENST00000621245 KHSRPQ92945 711 aaKnown RBP eCLIP13.09□□□□□ -0.31
CPNE3-210ENST00000621245 TOP1MTQ969P6 601 aa13.09□□□□□ -0.31
CPNE3-210ENST00000621245 MXRA8Q9BRK3 442 aa13.09□□□□□ -0.31
CPNE3-210ENST00000621245 ANO3Q9BYT9 981 aa13.09□□□□□ -0.31
CPNE3-210ENST00000621245 IFIH1Q9BYX4 1025 aaKnown RBP13.09□□□□□ -0.31
CPNE3-210ENST00000621245 EHMT1Q9H9B1 1298 aa13.09□□□□□ -0.31
CPNE3-210ENST00000621245 AGO3Q9H9G7 860 aaKnown RBP13.09□□□□□ -0.31
CPNE3-210ENST00000621245 AGO4Q9HCK5 861 aaKnown RBP13.09□□□□□ -0.31
CPNE3-210ENST00000621245 JPH1Q9HDC5 661 aaPredicted RBP13.09□□□□□ -0.31
CPNE3-210ENST00000621245 TUBE1Q9UJT0 475 aa13.09□□□□□ -0.31
CPNE3-210ENST00000621245 NRCAMQ92823 1304 aa13.09□□□□□ -0.31
CPNE3-210ENST00000621245 MBLAC1A4D2B0 266 aaPredicted RBP13.08□□□□□ -0.32
CPNE3-210ENST00000621245 DDX39AO00148 427 aaKnown RBP13.08□□□□□ -0.32
CPNE3-210ENST00000621245 CAND2O75155 1236 aa13.08□□□□□ -0.32
CPNE3-210ENST00000621245 CCNE2O96020 404 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms