RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 CAGE1Q8TC20 777 aa18.17■□□□□ 0.5
BRCA1-228ENST00000618469 SEPT1Q8WYJ6 367 aa18.17■□□□□ 0.5
BRCA1-228ENST00000618469 DHX38Q92620 1227 aaKnown RBP18.17■□□□□ 0.5
BRCA1-228ENST00000618469 VWCEQ96DN2 955 aa18.17■□□□□ 0.5
BRCA1-228ENST00000618469 UIMC1Q96RL1 719 aa18.17■□□□□ 0.5
BRCA1-228ENST00000618469 LRFN3Q9BTN0 628 aa18.17■□□□□ 0.5
BRCA1-228ENST00000618469 C1QTNF1Q9BXJ1 281 aa18.17■□□□□ 0.5
BRCA1-228ENST00000618469 MTIF3Q9H2K0 278 aaKnown RBP18.17■□□□□ 0.5
BRCA1-228ENST00000618469 KCNJ14Q9UNX9 436 aa18.17■□□□□ 0.5
BRCA1-228ENST00000618469 TRIP12Q14669 1992 aaPredicted RBP18.17■□□□□ 0.5
BRCA1-228ENST00000618469 GSTTP1A0A1W2PQM5 241 aa18.16■□□□□ 0.5
BRCA1-228ENST00000618469 C17orf102A2RUQ5 167 aa18.16■□□□□ 0.5
BRCA1-228ENST00000618469 XBP1P17861 261 aa18.16■□□□□ 0.5
BRCA1-228ENST00000618469 MARK3P27448 753 aa18.16■□□□□ 0.5
BRCA1-228ENST00000618469 HOXD11P31277 338 aaPredicted RBP18.16■□□□□ 0.5
BRCA1-228ENST00000618469 HIC1Q14526 733 aa18.16■□□□□ 0.5
BRCA1-228ENST00000618469 NPY5RQ15761 445 aa18.16■□□□□ 0.5
BRCA1-228ENST00000618469 PRR16Q569H4 304 aa18.16■□□□□ 0.5
BRCA1-228ENST00000618469 DEFB128Q7Z7B8 93 aa18.16■□□□□ 0.5
BRCA1-228ENST00000618469 NSUN7Q8NE18 718 aaKnown RBP18.16■□□□□ 0.5
BRCA1-228ENST00000618469 WASF1Q92558 559 aa18.16■□□□□ 0.5
BRCA1-228ENST00000618469 GLG1Q92896 1179 aa18.16■□□□□ 0.5
BRCA1-228ENST00000618469 KIF2CQ99661 725 aa18.16■□□□□ 0.5
BRCA1-228ENST00000618469 UPF2Q9HAU5 1272 aaKnown RBP18.16■□□□□ 0.5
BRCA1-228ENST00000618469 EMSYQ7Z589 1322 aa18.16■□□□□ 0.5
BRCA1-228ENST00000618469 FAM86C2PA6NEL3 165 aa18.15■□□□□ 0.5
BRCA1-228ENST00000618469 CA3P07451 260 aa18.15■□□□□ 0.5
BRCA1-228ENST00000618469 ATP2A2P16615 1042 aaKnown RBP18.15■□□□□ 0.5
BRCA1-228ENST00000618469 RBM25P49756 843 aaKnown RBP18.15■□□□□ 0.5
BRCA1-228ENST00000618469 ACTR2P61160 394 aa18.15■□□□□ 0.5
BRCA1-228ENST00000618469 ST3GAL1Q11201 340 aa18.15■□□□□ 0.5
BRCA1-228ENST00000618469 PTK7Q13308 1070 aa18.15■□□□□ 0.5
BRCA1-228ENST00000618469 GALNT17Q6IS24 598 aa18.15■□□□□ 0.5
BRCA1-228ENST00000618469 TBCKQ8TEA7 893 aa18.15■□□□□ 0.5
BRCA1-228ENST00000618469 AFAP1L1Q8TED9 768 aa18.15■□□□□ 0.5
BRCA1-228ENST00000618469 KHSRPQ92945 711 aaKnown RBP eCLIP18.15■□□□□ 0.5
BRCA1-228ENST00000618469 ATP6V0A1Q93050 837 aa18.15■□□□□ 0.5
BRCA1-228ENST00000618469 WNT8BQ93098 351 aa18.15■□□□□ 0.5
BRCA1-228ENST00000618469 ZNF577Q9BSK1 485 aa18.15■□□□□ 0.5
BRCA1-228ENST00000618469 PHF20Q9BVI0 1012 aa18.15■□□□□ 0.5
BRCA1-228ENST00000618469 GJB4Q9NTQ9 266 aa18.15■□□□□ 0.5
BRCA1-228ENST00000618469 M0R2N6 131 aa18.14■□□□□ 0.49
BRCA1-228ENST00000618469 IPO5O00410 1097 aaKnown RBP18.14■□□□□ 0.49
BRCA1-228ENST00000618469 JAK2O60674 1132 aa18.14■□□□□ 0.49
BRCA1-228ENST00000618469 ARHGEF15O94989 841 aa18.14■□□□□ 0.49
BRCA1-228ENST00000618469 IQCF3P0C7M6 154 aa18.14■□□□□ 0.49
BRCA1-228ENST00000618469 HOXC8P31273 242 aa18.14■□□□□ 0.49
BRCA1-228ENST00000618469 CIITAP33076 1130 aa18.14■□□□□ 0.49
BRCA1-228ENST00000618469 LRRC8DQ7L1W4 858 aa18.14■□□□□ 0.49
BRCA1-228ENST00000618469 SPRED2Q7Z698 418 aa18.14■□□□□ 0.49
BRCA1-228ENST00000618469 AZI2Q9H6S1 392 aa18.14■□□□□ 0.49
BRCA1-228ENST00000618469 ERAP1Q9NZ08 941 aa18.14■□□□□ 0.49
BRCA1-228ENST00000618469 LIMCH1Q9UPQ0 1083 aa18.14■□□□□ 0.49
BRCA1-228ENST00000618469 PCDHA11Q9Y5I1 949 aa18.14■□□□□ 0.49
BRCA1-228ENST00000618469 MTCH2Q9Y6C9 303 aa18.14■□□□□ 0.49
BRCA1-228ENST00000618469 CCNE2O96020 404 aa18.13■□□□□ 0.49
BRCA1-228ENST00000618469 PFKMP08237 780 aa18.13■□□□□ 0.49
BRCA1-228ENST00000618469 FDPSP14324 419 aaKnown RBP18.13■□□□□ 0.49
BRCA1-228ENST00000618469 SELPP16109 830 aa18.13■□□□□ 0.49
BRCA1-228ENST00000618469 RFC2P35250 354 aa18.13■□□□□ 0.49
BRCA1-228ENST00000618469 FOSBP53539 338 aa18.13■□□□□ 0.49
BRCA1-228ENST00000618469 RBL2Q08999 1139 aa18.13■□□□□ 0.49
BRCA1-228ENST00000618469 PPFIA1Q13136 1202 aa18.13■□□□□ 0.49
BRCA1-228ENST00000618469 NONOQ15233 471 aaKnown RBP eCLIP18.13■□□□□ 0.49
BRCA1-228ENST00000618469 KRT25Q7Z3Z0 450 aa18.13■□□□□ 0.49
BRCA1-228ENST00000618469 SERINC5Q86VE9 423 aa18.13■□□□□ 0.49
BRCA1-228ENST00000618469 CCDC83Q8IWF9 413 aa18.13■□□□□ 0.49
BRCA1-228ENST00000618469 RPUSD2Q8IZ73 545 aaKnown RBP18.13■□□□□ 0.49
BRCA1-228ENST00000618469 LMBR1Q8WVP7 490 aa18.13■□□□□ 0.49
BRCA1-228ENST00000618469 LENG9Q96B70 501 aa18.13■□□□□ 0.49
BRCA1-228ENST00000618469 RNPEPQ9H4A4 650 aa18.13■□□□□ 0.49
BRCA1-228ENST00000618469 SMARCAD1Q9H4L7 1026 aa18.13■□□□□ 0.49
BRCA1-228ENST00000618469 SETD4Q9NVD3 440 aa18.13■□□□□ 0.49
BRCA1-228ENST00000618469 TCEAL9Q9UHQ7 104 aa18.13■□□□□ 0.49
BRCA1-228ENST00000618469 CCDC194A0A1B0GVG4 234 aa18.12■□□□□ 0.49
BRCA1-228ENST00000618469 TREHO43280 583 aa18.12■□□□□ 0.49
BRCA1-228ENST00000618469 LGR5O75473 907 aa18.12■□□□□ 0.49
BRCA1-228ENST00000618469 TDP2O95551 362 aa18.12■□□□□ 0.49
BRCA1-228ENST00000618469 GNAT1P11488 350 aa18.12■□□□□ 0.49
BRCA1-228ENST00000618469 CKBP12277 381 aa18.12■□□□□ 0.49
BRCA1-228ENST00000618469 USP11P51784 963 aa18.12■□□□□ 0.49
BRCA1-228ENST00000618469 TRIM71Q2Q1W2 868 aaKnown RBP18.12■□□□□ 0.49
BRCA1-228ENST00000618469 ARNTL2Q8WYA1 636 aa18.12■□□□□ 0.49
BRCA1-228ENST00000618469 PCYT2Q99447 389 aa18.12■□□□□ 0.49
BRCA1-228ENST00000618469 KAT6AQ92794 2004 aa18.11■□□□□ 0.49
BRCA1-228ENST00000618469 BACH1O14867 736 aa18.11■□□□□ 0.49
BRCA1-228ENST00000618469 DHX15O43143 795 aaKnown RBP18.11■□□□□ 0.49
BRCA1-228ENST00000618469 EDIL3O43854 480 aa18.11■□□□□ 0.49
BRCA1-228ENST00000618469 THPOP40225 353 aa18.11■□□□□ 0.49
BRCA1-228ENST00000618469 RABEP1Q15276 862 aa18.11■□□□□ 0.49
BRCA1-228ENST00000618469 GRIK4Q16099 956 aa18.11■□□□□ 0.49
BRCA1-228ENST00000618469 INF2Q27J81 1249 aa18.11■□□□□ 0.49
BRCA1-228ENST00000618469 AAK1Q2M2I8 961 aa18.11■□□□□ 0.49
BRCA1-228ENST00000618469 OXER1Q8TDS5 423 aa18.11■□□□□ 0.49
BRCA1-228ENST00000618469 FTOQ9C0B1 505 aaKnown RBP eCLIP18.11■□□□□ 0.49
BRCA1-228ENST00000618469 TBC1D22BQ9NU19 505 aa18.11■□□□□ 0.49
BRCA1-228ENST00000618469 TRPC6Q9Y210 931 aa18.11■□□□□ 0.49
BRCA1-228ENST00000618469 HCN4Q9Y3Q4 1203 aa18.11■□□□□ 0.49
BRCA1-228ENST00000618469 NRCAMQ92823 1304 aa18.11■□□□□ 0.49
BRCA1-228ENST00000618469 MSH4O15457 936 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms