RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 CAND2O75155 1236 aa21.87■■□□□ 1.09
UPF1-212ENST00000601689 TDP2O95551 362 aa21.87■■□□□ 1.09
UPF1-212ENST00000601689 IQCF3P0C7M6 154 aa21.87■■□□□ 1.09
UPF1-212ENST00000601689 JAK3P52333 1124 aa21.87■■□□□ 1.09
UPF1-212ENST00000601689 TAF2Q6P1X5 1199 aa21.87■■□□□ 1.09
UPF1-212ENST00000601689 ABHD15Q6UXT9 468 aa21.87■■□□□ 1.09
UPF1-212ENST00000601689 LRRC8DQ7L1W4 858 aa21.87■■□□□ 1.09
UPF1-212ENST00000601689 SCLYQ96I15 445 aa21.87■■□□□ 1.09
UPF1-212ENST00000601689 TMX3Q96JJ7 454 aa21.87■■□□□ 1.09
UPF1-212ENST00000601689 FAM20AQ96MK3 541 aa21.87■■□□□ 1.09
UPF1-212ENST00000601689 FTOQ9C0B1 505 aaKnown RBP eCLIP21.87■■□□□ 1.09
UPF1-212ENST00000601689 UMODL1Q5DID0 1318 aa21.86■■□□□ 1.09
UPF1-212ENST00000601689 POTEB3A0JP26 581 aa21.86■■□□□ 1.09
UPF1-212ENST00000601689 BTBD18B2RXH4 712 aa21.86■■□□□ 1.09
UPF1-212ENST00000601689 DHX15O43143 795 aaKnown RBP21.86■■□□□ 1.09
UPF1-212ENST00000601689 HBP1O60381 514 aa21.86■■□□□ 1.09
UPF1-212ENST00000601689 CKBP12277 381 aa21.86■■□□□ 1.09
UPF1-212ENST00000601689 ST3GAL1Q11201 340 aa21.86■■□□□ 1.09
UPF1-212ENST00000601689 SWSAP1Q6NVH7 229 aa21.86■■□□□ 1.09
UPF1-212ENST00000601689 POTEBQ6S5H4 581 aa21.86■■□□□ 1.09
UPF1-212ENST00000601689 SERINC5Q86VE9 423 aa21.86■■□□□ 1.09
UPF1-212ENST00000601689 RDM1Q8NG50 284 aa21.86■■□□□ 1.09
UPF1-212ENST00000601689 OXER1Q8TDS5 423 aa21.86■■□□□ 1.09
UPF1-212ENST00000601689 SLC5A5Q92911 643 aa21.86■■□□□ 1.09
UPF1-212ENST00000601689 LENG9Q96B70 501 aa21.86■■□□□ 1.09
UPF1-212ENST00000601689 UIMC1Q96RL1 719 aa21.86■■□□□ 1.09
UPF1-212ENST00000601689 WNT8AQ9H1J5 351 aa21.86■■□□□ 1.09
UPF1-212ENST00000601689 PCDH10Q9P2E7 1040 aa21.86■■□□□ 1.09
UPF1-212ENST00000601689 TBX3O15119 743 aa21.85■■□□□ 1.09
UPF1-212ENST00000601689 TREHO43280 583 aa21.85■■□□□ 1.09
UPF1-212ENST00000601689 ACRP10323 421 aa21.85■■□□□ 1.09
UPF1-212ENST00000601689 THPOP40225 353 aa21.85■■□□□ 1.09
UPF1-212ENST00000601689 ZNF200P98182 395 aaPredicted RBP21.85■■□□□ 1.09
UPF1-212ENST00000601689 RBL2Q08999 1139 aa21.85■■□□□ 1.09
UPF1-212ENST00000601689 NR5A1Q13285 461 aa21.85■■□□□ 1.09
UPF1-212ENST00000601689 GRIK4Q16099 956 aa21.85■■□□□ 1.09
UPF1-212ENST00000601689 ZNF365Q70YC5 407 aa21.85■■□□□ 1.09
UPF1-212ENST00000601689 DEFB128Q7Z7B8 93 aa21.85■■□□□ 1.09
UPF1-212ENST00000601689 SLFN12Q8IYM2 578 aa21.85■■□□□ 1.09
UPF1-212ENST00000601689 FAM167AQ96KS9 214 aa21.85■■□□□ 1.09
UPF1-212ENST00000601689 BUD13Q9BRD0 619 aaKnown RBP eCLIP21.85■■□□□ 1.09
UPF1-212ENST00000601689 DISC1Q9NRI5 854 aa21.85■■□□□ 1.09
UPF1-212ENST00000601689 TUBE1Q9UJT0 475 aa21.85■■□□□ 1.09
UPF1-212ENST00000601689 CEP131Q9UPN4 1083 aa21.85■■□□□ 1.09
UPF1-212ENST00000601689 TELO2Q9Y4R8 837 aa21.85■■□□□ 1.09
UPF1-212ENST00000601689 IGKV6D-21A0A0A0MT36 114 aa21.84■■□□□ 1.09
UPF1-212ENST00000601689 CCNE2O96020 404 aa21.84■■□□□ 1.09
UPF1-212ENST00000601689 HOXC8P31273 242 aa21.84■■□□□ 1.09
UPF1-212ENST00000601689 FXR1P51114 621 aaKnown RBP eCLIP21.84■■□□□ 1.09
UPF1-212ENST00000601689 IGBP1P78318 339 aa21.84■■□□□ 1.09
UPF1-212ENST00000601689 GUCY1B3Q02153 619 aa21.84■■□□□ 1.09
UPF1-212ENST00000601689 TMEM240Q5SV17 173 aa21.84■■□□□ 1.09
UPF1-212ENST00000601689 C9orf50Q5SZB4 431 aa21.84■■□□□ 1.09
UPF1-212ENST00000601689 MIER3Q7Z3K6 550 aa21.84■■□□□ 1.09
UPF1-212ENST00000601689 FBXO18Q8NFZ0 1043 aa21.84■■□□□ 1.09
UPF1-212ENST00000601689 LMBR1Q8WVP7 490 aa21.84■■□□□ 1.09
UPF1-212ENST00000601689 MBOAT7Q96N66 472 aa21.84■■□□□ 1.09
UPF1-212ENST00000601689 FOXP1Q9H334 677 aaPredicted RBP21.84■■□□□ 1.09
UPF1-212ENST00000601689 SMC3Q9UQE7 1217 aa21.84■■□□□ 1.09
UPF1-212ENST00000601689 RSPH10B2B2RC85 870 aa21.83■■□□□ 1.09
UPF1-212ENST00000601689 M0QZ92 97 aa21.83■■□□□ 1.09
UPF1-212ENST00000601689 CHMP2AO43633 222 aa21.83■■□□□ 1.09
UPF1-212ENST00000601689 DKC1O60832 514 aaKnown RBP eCLIP21.83■■□□□ 1.09
UPF1-212ENST00000601689 RSPH10BP0C881 870 aa21.83■■□□□ 1.09
UPF1-212ENST00000601689 INSRRP14616 1297 aa21.83■■□□□ 1.09
UPF1-212ENST00000601689 PLCB4Q15147 1175 aa21.83■■□□□ 1.09
UPF1-212ENST00000601689 BBXQ8WY36 941 aaPredicted RBP21.83■■□□□ 1.09
UPF1-212ENST00000601689 PCYT2Q99447 389 aa21.83■■□□□ 1.09
UPF1-212ENST00000601689 NRBP2Q9NSY0 501 aa21.83■■□□□ 1.09
UPF1-212ENST00000601689 GABBR1Q9UBS5 961 aa21.83■■□□□ 1.09
UPF1-212ENST00000601689 NOL7Q9UMY1 257 aaKnown RBP21.83■■□□□ 1.09
UPF1-212ENST00000601689 TANC1Q9C0D5 1861 aa21.83■■□□□ 1.08
UPF1-212ENST00000601689 HSFX4A0A1B0GTS1 333 aaPredicted RBP21.82■■□□□ 1.08
UPF1-212ENST00000601689 HSFX3A0A1B0GWH4 333 aaPredicted RBP21.82■■□□□ 1.08
UPF1-212ENST00000601689 ZBBXA8MT70 800 aa21.82■■□□□ 1.08
UPF1-212ENST00000601689 H3BQV1 296 aa21.82■■□□□ 1.08
UPF1-212ENST00000601689 EPHB4P54760 987 aa21.82■■□□□ 1.08
UPF1-212ENST00000601689 ZNF484Q5JVG2 852 aa21.82■■□□□ 1.08
UPF1-212ENST00000601689 GPR153Q6NV75 609 aa21.82■■□□□ 1.08
UPF1-212ENST00000601689 CCDC60Q8IWA6 550 aaPredicted RBP21.82■■□□□ 1.08
UPF1-212ENST00000601689 ATP8B4Q8TF62 1192 aa21.82■■□□□ 1.08
UPF1-212ENST00000601689 HERVK_113Q902F9 699 aa21.82■■□□□ 1.08
UPF1-212ENST00000601689 MAFBQ9Y5Q3 323 aaPredicted RBP21.82■■□□□ 1.08
UPF1-212ENST00000601689 PSMD10O75832 226 aa21.81■■□□□ 1.08
UPF1-212ENST00000601689 ZNF618Q5T7W0 954 aa21.81■■□□□ 1.08
UPF1-212ENST00000601689 OTOP2Q7RTS6 562 aa21.81■■□□□ 1.08
UPF1-212ENST00000601689 ETNPPLQ8TBG4 499 aa21.81■■□□□ 1.08
UPF1-212ENST00000601689 DHX38Q92620 1227 aaKnown RBP21.81■■□□□ 1.08
UPF1-212ENST00000601689 TNFRSF25Q93038 417 aa21.81■■□□□ 1.08
UPF1-212ENST00000601689 COL1A2P08123 1366 aa21.81■■□□□ 1.08
UPF1-212ENST00000601689 WDR81Q562E7 1941 aa21.8■■□□□ 1.08
UPF1-212ENST00000601689 SCN5AQ14524 2016 aa21.8■■□□□ 1.08
UPF1-212ENST00000601689 SLC37A4O43826 429 aa21.8■■□□□ 1.08
UPF1-212ENST00000601689 EDIL3O43854 480 aa21.8■■□□□ 1.08
UPF1-212ENST00000601689 EFCAB14O75071 495 aa21.8■■□□□ 1.08
UPF1-212ENST00000601689 ADAM17P78536 824 aa21.8■■□□□ 1.08
UPF1-212ENST00000601689 SMAD3P84022 425 aaKnown RBP21.8■■□□□ 1.08
UPF1-212ENST00000601689 CALCRLQ16602 461 aa21.8■■□□□ 1.08
UPF1-212ENST00000601689 IER5Q5VY09 327 aa21.8■■□□□ 1.08
UPF1-212ENST00000601689 CTAGE1Q96RT6 745 aa21.8■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms