RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 DKC1O60832 514 aaKnown RBP eCLIP16.09■□□□□ 0.17
UPF1-211ENST00000600868 ADAMTS4O75173 837 aa16.09■□□□□ 0.17
UPF1-211ENST00000600868 MED24O75448 989 aa16.09■□□□□ 0.17
UPF1-211ENST00000600868 CCL5P13501 91 aa16.09■□□□□ 0.17
UPF1-211ENST00000600868 QARSP47897 775 aaKnown RBP16.09■□□□□ 0.17
UPF1-211ENST00000600868 PSMC5P62195 406 aa16.09■□□□□ 0.17
UPF1-211ENST00000600868 MTFR1Q15390 333 aa16.09■□□□□ 0.17
UPF1-211ENST00000600868 SWSAP1Q6NVH7 229 aa16.09■□□□□ 0.17
UPF1-211ENST00000600868 CATSPER3Q86XQ3 398 aa16.09■□□□□ 0.17
UPF1-211ENST00000600868 CCDC60Q8IWA6 550 aaPredicted RBP16.09■□□□□ 0.17
UPF1-211ENST00000600868 KCTD17Q8N5Z5 321 aa16.09■□□□□ 0.17
UPF1-211ENST00000600868 KLHDC9Q8NEP7 349 aa16.09■□□□□ 0.17
UPF1-211ENST00000600868 AFAP1L1Q8TED9 768 aa16.09■□□□□ 0.17
UPF1-211ENST00000600868 ATP6V0A1Q93050 837 aa16.09■□□□□ 0.17
UPF1-211ENST00000600868 CALML4Q96GE6 196 aa16.09■□□□□ 0.17
UPF1-211ENST00000600868 PCYT2Q99447 389 aa16.09■□□□□ 0.17
UPF1-211ENST00000600868 NT5C3AQ9H0P0 336 aa16.09■□□□□ 0.17
UPF1-211ENST00000600868 ZSWIM4Q9H7M6 989 aa16.09■□□□□ 0.17
UPF1-211ENST00000600868 GABBR1Q9UBS5 961 aa16.09■□□□□ 0.17
UPF1-211ENST00000600868 KCNH3Q9ULD8 1083 aa16.09■□□□□ 0.17
UPF1-211ENST00000600868 MAFBQ9Y5Q3 323 aaPredicted RBP16.09■□□□□ 0.17
UPF1-211ENST00000600868 EMSYQ7Z589 1322 aa16.09■□□□□ 0.17
UPF1-211ENST00000600868 A0A1B0GVL5 298 aa16.08■□□□□ 0.16
UPF1-211ENST00000600868 BACH1O14867 736 aa16.08■□□□□ 0.16
UPF1-211ENST00000600868 KPNA6O60684 536 aa16.08■□□□□ 0.16
UPF1-211ENST00000600868 LYPLA2O95372 231 aa16.08■□□□□ 0.16
UPF1-211ENST00000600868 PGK1P00558 417 aa16.08■□□□□ 0.16
UPF1-211ENST00000600868 C6orf222P0C671 652 aaPredicted RBP16.08■□□□□ 0.16
UPF1-211ENST00000600868 PFKFB1P16118 471 aa16.08■□□□□ 0.16
UPF1-211ENST00000600868 PTMSP20962 102 aa16.08■□□□□ 0.16
UPF1-211ENST00000600868 CST5P28325 142 aaPredicted RBP16.08■□□□□ 0.16
UPF1-211ENST00000600868 CYP4A11Q02928 519 aa16.08■□□□□ 0.16
UPF1-211ENST00000600868 GRB10Q13322 594 aa16.08■□□□□ 0.16
UPF1-211ENST00000600868 CTTNQ14247 550 aaKnown RBP16.08■□□□□ 0.16
UPF1-211ENST00000600868 KARSQ15046 597 aaKnown RBP16.08■□□□□ 0.16
UPF1-211ENST00000600868 TMEM119Q4V9L6 283 aa16.08■□□□□ 0.16
UPF1-211ENST00000600868 FAM160B1Q5W0V3 765 aa16.08■□□□□ 0.16
UPF1-211ENST00000600868 PLPPR4Q7Z2D5 763 aa16.08■□□□□ 0.16
UPF1-211ENST00000600868 TPH2Q8IWU9 490 aa16.08■□□□□ 0.16
UPF1-211ENST00000600868 C4orf19Q8IY42 314 aa16.08■□□□□ 0.16
UPF1-211ENST00000600868 BANK1Q8NDB2 785 aa16.08■□□□□ 0.16
UPF1-211ENST00000600868 PNMA5Q96PV4 448 aa16.08■□□□□ 0.16
UPF1-211ENST00000600868 PYM1Q9BRP8 204 aaKnown RBP16.08■□□□□ 0.16
UPF1-211ENST00000600868 LXNQ9BS40 222 aa16.08■□□□□ 0.16
UPF1-211ENST00000600868 RNF208Q9H0X6 261 aa16.08■□□□□ 0.16
UPF1-211ENST00000600868 GOLPH3LQ9H4A5 285 aa16.08■□□□□ 0.16
UPF1-211ENST00000600868 SMARCAD1Q9H4L7 1026 aa16.08■□□□□ 0.16
UPF1-211ENST00000600868 AZI2Q9H6S1 392 aa16.08■□□□□ 0.16
UPF1-211ENST00000600868 ZNF302Q9NR11 478 aa16.08■□□□□ 0.16
UPF1-211ENST00000600868 IGSF9BQ9UPX0 1349 aa16.08■□□□□ 0.16
UPF1-211ENST00000600868 WDR81Q562E7 1941 aa16.07■□□□□ 0.16
UPF1-211ENST00000600868 POTEB3A0JP26 581 aa16.07■□□□□ 0.16
UPF1-211ENST00000600868 ZEB2O60315 1214 aa16.07■□□□□ 0.16
UPF1-211ENST00000600868 LGALS2P05162 132 aa16.07■□□□□ 0.16
UPF1-211ENST00000600868 SLC26A2P50443 739 aa16.07■□□□□ 0.16
UPF1-211ENST00000600868 STAT5BP51692 787 aa16.07■□□□□ 0.16
UPF1-211ENST00000600868 NDUFA8P51970 172 aa16.07■□□□□ 0.16
UPF1-211ENST00000600868 BEX3Q00994 111 aa16.07■□□□□ 0.16
UPF1-211ENST00000600868 ECM1Q16610 540 aa16.07■□□□□ 0.16
UPF1-211ENST00000600868 UGCGQ16739 394 aa16.07■□□□□ 0.16
UPF1-211ENST00000600868 TPRNQ4KMQ1 711 aa16.07■□□□□ 0.16
UPF1-211ENST00000600868 GNASQ5JWF2 1037 aa16.07■□□□□ 0.16
UPF1-211ENST00000600868 UTP14CQ5TAP6 766 aaKnown RBP16.07■□□□□ 0.16
UPF1-211ENST00000600868 POTEBQ6S5H4 581 aa16.07■□□□□ 0.16
UPF1-211ENST00000600868 CCDC73Q6ZRK6 1079 aa16.07■□□□□ 0.16
UPF1-211ENST00000600868 CDK5RAP3Q96JB5 506 aa16.07■□□□□ 0.16
UPF1-211ENST00000600868 C16orf70Q9BSU1 422 aa16.07■□□□□ 0.16
UPF1-211ENST00000600868 MCOLN1Q9GZU1 580 aa16.07■□□□□ 0.16
UPF1-211ENST00000600868 KIAA1024Q9UPX6 916 aa16.07■□□□□ 0.16
UPF1-211ENST00000600868 FRMPD3Q5JV73 1810 aa16.06■□□□□ 0.16
UPF1-211ENST00000600868 A0A087X0B3 334 aa16.06■□□□□ 0.16
UPF1-211ENST00000600868 MYADML2A6NDP7 307 aa16.06■□□□□ 0.16
UPF1-211ENST00000600868 POLR2DO15514 142 aaKnown RBP16.06■□□□□ 0.16
UPF1-211ENST00000600868 ZNF862O60290 1169 aa16.06■□□□□ 0.16
UPF1-211ENST00000600868 PLCG1P19174 1290 aa16.06■□□□□ 0.16
UPF1-211ENST00000600868 SYKP43405 635 aa16.06■□□□□ 0.16
UPF1-211ENST00000600868 IRX5P78411 483 aaPredicted RBP16.06■□□□□ 0.16
UPF1-211ENST00000600868 FAM160A1Q05DH4 1040 aa16.06■□□□□ 0.16
UPF1-211ENST00000600868 ZRSR1Q15695 479 aaKnown RBP16.06■□□□□ 0.16
UPF1-211ENST00000600868 RRAGBQ5VZM2 374 aa16.06■□□□□ 0.16
UPF1-211ENST00000600868 CCSAPQ6IQ19 270 aaPredicted RBP16.06■□□□□ 0.16
UPF1-211ENST00000600868 PDXDC2PQ6P474 469 aa16.06■□□□□ 0.16
UPF1-211ENST00000600868 POTEGQ6S5H5 508 aa16.06■□□□□ 0.16
UPF1-211ENST00000600868 RNF180Q86T96 592 aa16.06■□□□□ 0.16
UPF1-211ENST00000600868 PCSK9Q8NBP7 692 aaKnown RBP16.06■□□□□ 0.16
UPF1-211ENST00000600868 ARRDC4Q8NCT1 418 aa16.06■□□□□ 0.16
UPF1-211ENST00000600868 ENGASEQ8NFI3 743 aa16.06■□□□□ 0.16
UPF1-211ENST00000600868 RASSF8Q8NHQ8 419 aa16.06■□□□□ 0.16
UPF1-211ENST00000600868 GLG1Q92896 1179 aa16.06■□□□□ 0.16
UPF1-211ENST00000600868 NACC1Q96RE7 527 aa16.06■□□□□ 0.16
UPF1-211ENST00000600868 PANK2Q9BZ23 570 aa16.06■□□□□ 0.16
UPF1-211ENST00000600868 DDX19AQ9NUU7 478 aaKnown RBP16.06■□□□□ 0.16
UPF1-211ENST00000600868 ERAP1Q9NZ08 941 aa16.06■□□□□ 0.16
UPF1-211ENST00000600868 WRAP73Q9P2S5 460 aaPredicted RBP16.06■□□□□ 0.16
UPF1-211ENST00000600868 STK17AQ9UEE5 414 aa16.06■□□□□ 0.16
UPF1-211ENST00000600868 USP25Q9UHP3 1055 aa16.06■□□□□ 0.16
UPF1-211ENST00000600868 MYH9P35579 1960 aaKnown RBP16.06■□□□□ 0.16
UPF1-211ENST00000600868 STBD1O95210 358 aa16.05■□□□□ 0.16
UPF1-211ENST00000600868 MYCP01106 439 aaPredicted RBP16.05■□□□□ 0.16
UPF1-211ENST00000600868 XRCC6P12956 609 aaKnown RBP eCLIP16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms