RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 ZBED2Q9BTP6 218 aa14.41□□□□□ -0.1
UPF1-208ENST00000600012 SH3GLB2Q9NR46 395 aa14.41□□□□□ -0.1
UPF1-208ENST00000600012 NBNO60934 754 aa14.4□□□□□ -0.1
UPF1-208ENST00000600012 PPFIA4O75335 1185 aa14.4□□□□□ -0.1
UPF1-208ENST00000600012 NCLP19338 710 aaKnown RBP14.4□□□□□ -0.1
UPF1-208ENST00000600012 KCNQ1P51787 676 aa14.4□□□□□ -0.1
UPF1-208ENST00000600012 DEFB103AP81534 67 aa14.4□□□□□ -0.1
UPF1-208ENST00000600012 TRAF1Q13077 416 aa14.4□□□□□ -0.1
UPF1-208ENST00000600012 GRB10Q13322 594 aa14.4□□□□□ -0.1
UPF1-208ENST00000600012 NFKBIBQ15653 356 aa14.4□□□□□ -0.1
UPF1-208ENST00000600012 CLEC17AQ6ZS10 378 aa14.4□□□□□ -0.1
UPF1-208ENST00000600012 NECAB3Q96P71 396 aaPredicted RBP14.4□□□□□ -0.1
UPF1-208ENST00000600012 PCDHA1Q9Y5I3 950 aa14.4□□□□□ -0.1
UPF1-208ENST00000600012 ATP6V1DQ9Y5K8 247 aa14.4□□□□□ -0.1
UPF1-208ENST00000600012 MICAL3Q7RTP6 2002 aa14.4□□□□□ -0.1
UPF1-208ENST00000600012 REV3LO60673 3130 aa14.39□□□□□ -0.11
UPF1-208ENST00000600012 LCHNA4D1U4 455 aa14.39□□□□□ -0.11
UPF1-208ENST00000600012 hCG_1984214I3L0E3 225 aa14.39□□□□□ -0.11
UPF1-208ENST00000600012 RGS20O76081 388 aa14.39□□□□□ -0.11
UPF1-208ENST00000600012 GJB5O95377 273 aa14.39□□□□□ -0.11
UPF1-208ENST00000600012 MYCLP12524 364 aaPredicted RBP14.39□□□□□ -0.11
UPF1-208ENST00000600012 U2AF2P26368 475 aaKnown RBP eCLIP14.39□□□□□ -0.11
UPF1-208ENST00000600012 MCM4P33991 863 aa14.39□□□□□ -0.11
UPF1-208ENST00000600012 IKBKEQ14164 716 aa14.39□□□□□ -0.11
UPF1-208ENST00000600012 PGM5Q15124 567 aa14.39□□□□□ -0.11
UPF1-208ENST00000600012 TRIM71Q2Q1W2 868 aaKnown RBP14.39□□□□□ -0.11
UPF1-208ENST00000600012 MYSM1Q5VVJ2 828 aa14.39□□□□□ -0.11
UPF1-208ENST00000600012 BRAPQ7Z569 592 aa14.39□□□□□ -0.11
UPF1-208ENST00000600012 ZNF713Q8N859 430 aaPredicted RBP14.39□□□□□ -0.11
UPF1-208ENST00000600012 SPATA33Q96N06 139 aa14.39□□□□□ -0.11
UPF1-208ENST00000600012 GDPD2Q9HCC8 539 aa14.39□□□□□ -0.11
UPF1-208ENST00000600012 BRMS1Q9HCU9 246 aa14.39□□□□□ -0.11
UPF1-208ENST00000600012 LMCD1Q9NZU5 365 aa14.39□□□□□ -0.11
UPF1-208ENST00000600012 FAM205CA6NFA0 338 aa14.38□□□□□ -0.11
UPF1-208ENST00000600012 SMCO2A6NFE2 343 aa14.38□□□□□ -0.11
UPF1-208ENST00000600012 FIBPO43427 364 aa14.38□□□□□ -0.11
UPF1-208ENST00000600012 LPXNO60711 386 aa14.38□□□□□ -0.11
UPF1-208ENST00000600012 GGPS1O95749 300 aa14.38□□□□□ -0.11
UPF1-208ENST00000600012 TGFB3P10600 412 aa14.38□□□□□ -0.11
UPF1-208ENST00000600012 HSDL1Q3SXM5 330 aa14.38□□□□□ -0.11
UPF1-208ENST00000600012 CELF3Q5SZQ8 465 aaKnown RBP14.38□□□□□ -0.11
UPF1-208ENST00000600012 ZNF618Q5T7W0 954 aa14.38□□□□□ -0.11
UPF1-208ENST00000600012 PPP1R18Q6NYC8 613 aa14.38□□□□□ -0.11
UPF1-208ENST00000600012 TRAF7Q6Q0C0 670 aa14.38□□□□□ -0.11
UPF1-208ENST00000600012 SPRED2Q7Z698 418 aa14.38□□□□□ -0.11
UPF1-208ENST00000600012 TMCO2Q7Z6W1 182 aaPredicted RBP14.38□□□□□ -0.11
UPF1-208ENST00000600012 VSIG10LQ86VR7 867 aa14.38□□□□□ -0.11
UPF1-208ENST00000600012 NOSTRINQ8IVI9 506 aa14.38□□□□□ -0.11
UPF1-208ENST00000600012 BLIDQ8IZY5 108 aa14.38□□□□□ -0.11
UPF1-208ENST00000600012 DAGLBQ8NCG7 672 aa14.38□□□□□ -0.11
UPF1-208ENST00000600012 RASGRP4Q8TDF6 673 aa14.38□□□□□ -0.11
UPF1-208ENST00000600012 CCDC12Q8WUD4 166 aaPredicted RBP14.38□□□□□ -0.11
UPF1-208ENST00000600012 HLA-CQ95604 372 aa14.38□□□□□ -0.11
UPF1-208ENST00000600012 RAD9AQ99638 391 aa14.38□□□□□ -0.11
UPF1-208ENST00000600012 FOXP1Q9H334 677 aaPredicted RBP14.38□□□□□ -0.11
UPF1-208ENST00000600012 TFIP11Q9UBB9 837 aaKnown RBP14.38□□□□□ -0.11
UPF1-208ENST00000600012 PCDHA4Q9UN74 947 aa14.38□□□□□ -0.11
UPF1-208ENST00000600012 EMSYQ7Z589 1322 aa14.38□□□□□ -0.11
UPF1-208ENST00000600012 ESYT2A0FGR8 921 aa14.37□□□□□ -0.11
UPF1-208ENST00000600012 GCOM1H8Y6P7 765 aaPredicted RBP14.37□□□□□ -0.11
UPF1-208ENST00000600012 POLR2MP0CAP2 368 aa14.37□□□□□ -0.11
UPF1-208ENST00000600012 UBA1P22314 1058 aaKnown RBP14.37□□□□□ -0.11
UPF1-208ENST00000600012 CCND2P30279 289 aa14.37□□□□□ -0.11
UPF1-208ENST00000600012 HOXA13P31271 388 aaPredicted RBP14.37□□□□□ -0.11
UPF1-208ENST00000600012 KRT85P78386 507 aa14.37□□□□□ -0.11
UPF1-208ENST00000600012 TCTN1Q2MV58 587 aa14.37□□□□□ -0.11
UPF1-208ENST00000600012 EARS2Q5JPH6 523 aaKnown RBP14.37□□□□□ -0.11
UPF1-208ENST00000600012 IL31RAQ8NI17 732 aa14.37□□□□□ -0.11
UPF1-208ENST00000600012 GDPD5Q8WTR4 605 aa14.37□□□□□ -0.11
UPF1-208ENST00000600012 TNFRSF25Q93038 417 aa14.37□□□□□ -0.11
UPF1-208ENST00000600012 WNT8BQ93098 351 aa14.37□□□□□ -0.11
UPF1-208ENST00000600012 TGS1Q96RS0 853 aaKnown RBP14.37□□□□□ -0.11
UPF1-208ENST00000600012 C1QTNF1Q9BXJ1 281 aa14.37□□□□□ -0.11
UPF1-208ENST00000600012 ZMYND12Q9H0C1 365 aa14.37□□□□□ -0.11
UPF1-208ENST00000600012 C6orf50Q9HD87 102 aa14.37□□□□□ -0.11
UPF1-208ENST00000600012 KAT6AQ92794 2004 aa14.36□□□□□ -0.11
UPF1-208ENST00000600012 DOCK5Q9H7D0 1870 aa14.36□□□□□ -0.11
UPF1-208ENST00000600012 LGR5O75473 907 aa14.36□□□□□ -0.11
UPF1-208ENST00000600012 ADCY7P51828 1080 aa14.36□□□□□ -0.11
UPF1-208ENST00000600012 ERVK-21P61565 698 aa14.36□□□□□ -0.11
UPF1-208ENST00000600012 ZNF200P98182 395 aaPredicted RBP14.36□□□□□ -0.11
UPF1-208ENST00000600012 CEBPZQ03701 1054 aaKnown RBP14.36□□□□□ -0.11
UPF1-208ENST00000600012 MBTPS1Q14703 1052 aa14.36□□□□□ -0.11
UPF1-208ENST00000600012 SERINC5Q86VE9 423 aa14.36□□□□□ -0.11
UPF1-208ENST00000600012 FAM177A1Q8N128 213 aaPredicted RBP14.36□□□□□ -0.11
UPF1-208ENST00000600012 ZNF396Q96N95 335 aaPredicted RBP14.36□□□□□ -0.11
UPF1-208ENST00000600012 USP28Q96RU2 1077 aa14.36□□□□□ -0.11
UPF1-208ENST00000600012 C16orf70Q9BSU1 422 aa14.36□□□□□ -0.11
UPF1-208ENST00000600012 MLXIPQ9HAP2 919 aa14.36□□□□□ -0.11
UPF1-208ENST00000600012 PCDHA6Q9UN73 950 aa14.36□□□□□ -0.11
UPF1-208ENST00000600012 PCDHA8Q9Y5H6 950 aa14.36□□□□□ -0.11
UPF1-208ENST00000600012 LINC01553A4QN01 128 aa14.35□□□□□ -0.11
UPF1-208ENST00000600012 M0R2N6 131 aa14.35□□□□□ -0.11
UPF1-208ENST00000600012 SORBS3O60504 671 aa14.35□□□□□ -0.11
UPF1-208ENST00000600012 GNA11P29992 359 aa14.35□□□□□ -0.11
UPF1-208ENST00000600012 SP2Q02086 613 aa14.35□□□□□ -0.11
UPF1-208ENST00000600012 HIC1Q14526 733 aa14.35□□□□□ -0.11
UPF1-208ENST00000600012 NBR1Q14596 966 aa14.35□□□□□ -0.11
UPF1-208ENST00000600012 UBE2SQ16763 222 aa14.35□□□□□ -0.11
UPF1-208ENST00000600012 GNPTABQ3T906 1256 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms