RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 C19orf81C9J6K1 198 aa22.07■■□□□ 1.12
UPF1-207ENST00000599848 CLDN3O15551 220 aa22.07■■□□□ 1.12
UPF1-207ENST00000599848 EVI5O60447 810 aa22.07■■□□□ 1.12
UPF1-207ENST00000599848 KAZNQ674X7 775 aa22.07■■□□□ 1.12
UPF1-207ENST00000599848 TBC1D19Q8N5T2 526 aa22.06■■□□□ 1.12
UPF1-207ENST00000599848 ZNF302Q9NR11 478 aa22.06■■□□□ 1.12
UPF1-207ENST00000599848 ZNRF3Q9ULT6 936 aa22.06■■□□□ 1.12
UPF1-207ENST00000599848 PBRM1Q86U86 1689 aa22.06■■□□□ 1.12
UPF1-207ENST00000599848 PTK2BQ14289 1009 aa22.06■■□□□ 1.12
UPF1-207ENST00000599848 SUSD4Q5VX71 490 aa22.06■■□□□ 1.12
UPF1-207ENST00000599848 PRDM5Q9NQX1 630 aaPredicted RBP22.06■■□□□ 1.12
UPF1-207ENST00000599848 ARHGAP31Q2M1Z3 1444 aa22.06■■□□□ 1.12
UPF1-207ENST00000599848 ALDH1A1P00352 501 aa22.06■■□□□ 1.12
UPF1-207ENST00000599848 CMTR1Q8N1G2 835 aaKnown RBP22.06■■□□□ 1.12
UPF1-207ENST00000599848 EFCC1Q9HA90 598 aa22.06■■□□□ 1.12
UPF1-207ENST00000599848 CDHR2Q9BYE9 1310 aa22.06■■□□□ 1.12
UPF1-207ENST00000599848 ZBTB5O15062 677 aa22.06■■□□□ 1.12
UPF1-207ENST00000599848 DARS2Q6PI48 645 aaKnown RBP22.06■■□□□ 1.12
UPF1-207ENST00000599848 TUBGCP2Q9BSJ2 902 aa22.06■■□□□ 1.12
UPF1-207ENST00000599848 RNF14Q9UBS8 474 aa22.06■■□□□ 1.12
UPF1-207ENST00000599848 DBNLQ9UJU6 430 aaKnown RBP22.06■■□□□ 1.12
UPF1-207ENST00000599848 APOEP02649 317 aa22.05■■□□□ 1.12
UPF1-207ENST00000599848 PLA2G4BP0C869 781 aa22.05■■□□□ 1.12
UPF1-207ENST00000599848 FAM182BQ5T319 152 aa22.05■■□□□ 1.12
UPF1-207ENST00000599848 KRT39Q6A163 491 aa22.05■■□□□ 1.12
UPF1-207ENST00000599848 OTUD5Q96G74 571 aa22.05■■□□□ 1.12
UPF1-207ENST00000599848 SYNMO15061 1565 aa22.05■■□□□ 1.12
UPF1-207ENST00000599848 SLC39A14Q15043 492 aa22.05■■□□□ 1.12
UPF1-207ENST00000599848 SCG3Q8WXD2 468 aaKnown RBP22.05■■□□□ 1.12
UPF1-207ENST00000599848 MAP4K1Q92918 833 aa22.05■■□□□ 1.12
UPF1-207ENST00000599848 EDC3Q96F86 508 aaKnown RBP22.05■■□□□ 1.12
UPF1-207ENST00000599848 SLC7A5P2Q9GIP4 190 aa22.05■■□□□ 1.12
UPF1-207ENST00000599848 EMILIN3Q9NT22 766 aa22.05■■□□□ 1.12
UPF1-207ENST00000599848 PRELPP51888 382 aa22.05■■□□□ 1.12
UPF1-207ENST00000599848 COPB1P53618 953 aaKnown RBP22.05■■□□□ 1.12
UPF1-207ENST00000599848 TFDP2Q14188 446 aa22.05■■□□□ 1.12
UPF1-207ENST00000599848 MCUQ8NE86 351 aa22.05■■□□□ 1.12
UPF1-207ENST00000599848 PPP1R12CQ9BZL4 782 aa22.05■■□□□ 1.12
UPF1-207ENST00000599848 CD209Q9NNX6 404 aa22.05■■□□□ 1.12
UPF1-207ENST00000599848 GPSM2P81274 684 aa22.05■■□□□ 1.12
UPF1-207ENST00000599848 LRRC63Q05C16 580 aa22.05■■□□□ 1.12
UPF1-207ENST00000599848 MESDQ14696 234 aa22.05■■□□□ 1.12
UPF1-207ENST00000599848 ERICH1Q86X53 443 aa22.05■■□□□ 1.12
UPF1-207ENST00000599848 LSM7Q9UK45 103 aaKnown RBP22.05■■□□□ 1.12
UPF1-207ENST00000599848 ERVK-7P63135 1459 aa22.05■■□□□ 1.12
UPF1-207ENST00000599848 TAC1P20366 129 aa22.04■■□□□ 1.12
UPF1-207ENST00000599848 MTRQ99707 1265 aa22.04■■□□□ 1.12
UPF1-207ENST00000599848 CDC42BPGQ6DT37 1551 aa22.04■■□□□ 1.12
UPF1-207ENST00000599848 IPO5O00410 1097 aaKnown RBP22.04■■□□□ 1.12
UPF1-207ENST00000599848 HMGB3O15347 200 aaKnown RBP22.04■■□□□ 1.12
UPF1-207ENST00000599848 MARK3P27448 753 aa22.04■■□□□ 1.12
UPF1-207ENST00000599848 RCAN1P53805 252 aa22.04■■□□□ 1.12
UPF1-207ENST00000599848 SCN4BQ8IWT1 228 aa22.04■■□□□ 1.12
UPF1-207ENST00000599848 ITM2BQ9Y287 266 aa22.04■■□□□ 1.12
UPF1-207ENST00000599848 CSPG5O95196 566 aa22.04■■□□□ 1.12
UPF1-207ENST00000599848 STAT3P40763 770 aa22.04■■□□□ 1.12
UPF1-207ENST00000599848 BRD3Q15059 726 aa22.04■■□□□ 1.12
UPF1-207ENST00000599848 ZBTB18Q99592 522 aa22.04■■□□□ 1.12
UPF1-207ENST00000599848 KIAA0391O15091 583 aaKnown RBP22.04■■□□□ 1.12
UPF1-207ENST00000599848 LCORLQ8N3X6 602 aa22.04■■□□□ 1.12
UPF1-207ENST00000599848 SRPRBQ9Y5M8 271 aaKnown RBP22.04■■□□□ 1.12
UPF1-207ENST00000599848 MYO5CQ9NQX4 1742 aa22.03■■□□□ 1.12
UPF1-207ENST00000599848 ZNF658Q5TYW1 1059 aaPredicted RBP22.03■■□□□ 1.12
UPF1-207ENST00000599848 MB21D1Q8N884 522 aa22.03■■□□□ 1.12
UPF1-207ENST00000599848 EIF2B5Q13144 721 aaKnown RBP22.03■■□□□ 1.12
UPF1-207ENST00000599848 ANKRD42Q8N9B4 389 aa22.03■■□□□ 1.12
UPF1-207ENST00000599848 TTC13Q8NBP0 860 aa22.03■■□□□ 1.12
UPF1-207ENST00000599848 TMEM35BQ8NCS4 154 aa22.03■■□□□ 1.12
UPF1-207ENST00000599848 LRRC8CQ8TDW0 803 aa22.03■■□□□ 1.12
UPF1-207ENST00000599848 STAG1Q8WVM7 1258 aa22.03■■□□□ 1.12
UPF1-207ENST00000599848 AAASQ9NRG9 546 aa22.03■■□□□ 1.12
UPF1-207ENST00000599848 EPS15L1Q9UBC2 864 aa22.03■■□□□ 1.12
UPF1-207ENST00000599848 BNIP3LO60238 219 aa22.03■■□□□ 1.12
UPF1-207ENST00000599848 TBXAS1P24557 533 aaPredicted RBP22.03■■□□□ 1.12
UPF1-207ENST00000599848 USP28Q96RU2 1077 aa22.03■■□□□ 1.12
UPF1-207ENST00000599848 CARD6Q9BX69 1037 aa22.03■■□□□ 1.12
UPF1-207ENST00000599848 MMP14P50281 582 aa22.03■■□□□ 1.12
UPF1-207ENST00000599848 ZNF157P51786 506 aaPredicted RBP22.03■■□□□ 1.12
UPF1-207ENST00000599848 ZNF568Q3ZCX4 644 aa22.03■■□□□ 1.12
UPF1-207ENST00000599848 CCDC38Q502W7 563 aa22.03■■□□□ 1.12
UPF1-207ENST00000599848 POLR3EQ9NVU0 708 aa22.03■■□□□ 1.12
UPF1-207ENST00000599848 ARHGAP42A6NI28 874 aa22.02■■□□□ 1.12
UPF1-207ENST00000599848 GOLGA8KD6RF30 607 aa22.02■■□□□ 1.12
UPF1-207ENST00000599848 ZBED1O96006 694 aa22.02■■□□□ 1.12
UPF1-207ENST00000599848 SPATS2Q86XZ4 545 aaKnown RBP22.02■■□□□ 1.12
UPF1-207ENST00000599848 GBP7Q8N8V2 638 aaPredicted RBP22.02■■□□□ 1.12
UPF1-207ENST00000599848 TTLL11Q8NHH1 800 aa22.02■■□□□ 1.12
UPF1-207ENST00000599848 EFHD1Q9BUP0 239 aa22.02■■□□□ 1.12
UPF1-207ENST00000599848 RPS12P25398 132 aaKnown RBP22.02■■□□□ 1.12
UPF1-207ENST00000599848 CLCN1P35523 988 aa22.02■■□□□ 1.12
UPF1-207ENST00000599848 TEX12Q9BXU0 123 aa22.02■■□□□ 1.12
UPF1-207ENST00000599848 FAM83BQ5T0W9 1011 aa22.02■■□□□ 1.12
UPF1-207ENST00000599848 RNF10Q8N5U6 811 aaKnown RBP22.02■■□□□ 1.12
UPF1-207ENST00000599848 TNS3Q68CZ2 1445 aa22.02■■□□□ 1.12
UPF1-207ENST00000599848 CCDC151A5D8V7 595 aa22.02■■□□□ 1.11
UPF1-207ENST00000599848 WASHC5Q12768 1159 aa22.02■■□□□ 1.11
UPF1-207ENST00000599848 CALN1Q9BXU9 219 aa22.02■■□□□ 1.11
UPF1-207ENST00000599848 SEL1LQ9UBV2 794 aa22.02■■□□□ 1.11
UPF1-207ENST00000599848 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP22.02■■□□□ 1.11
UPF1-207ENST00000599848 UTYO14607 1347 aa22.01■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms